PDB Chemical Component ZDC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZDC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C1M	1.520	1.530
C1M	H1M1	1.100	1.090
C1M	H1M2	1.100	1.090
C1M	H1M3	1.100	1.090
C1	H1	1.100	1.089
C1	O5	1.448	1.430
C1	C2	1.522	1.532
C2	H2	1.100	1.090
C2	O2	1.414	1.428
O2	H2O	0.950	0.968
C2	C3	1.503	1.532
C3	H3	1.100	1.090
C3	O3	1.420	1.429
O3	H3O	0.950	0.967
C3	C4	1.537	1.531
C4	H4	1.100	1.091
C4	O4	1.416	1.429
O4	H4O	0.950	0.967
C4	C5	1.540	1.531
C5	H5	1.100	1.089
C5	O5	1.444	1.430
C5	C6	1.542	1.529
C6	H61	1.100	1.090
C6	H62	1.100	1.090
C6	C7	1.526	1.507
C7	O7A	1.230	1.208
C7	O7B	1.319	1.342
O7B	H7OB	0.949	0.967

Bond Angles for ZDC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C1M	H1M1	109.5	109.5
C1	C1M	H1M2	109.4	109.5
C1	C1M	H1M3	109.4	109.5
C1M	C1	H1	108.9	109.5
C1M	C1	O5	108.0	109.4
C1M	C1	C2	111.4	109.5
H1M1	C1M	H1M2	109.5	109.4
H1M1	C1M	H1M3	109.5	109.5
H1M2	C1M	H1M3	109.5	109.5
O5	C1	H1	109.8	109.5
C2	C1	H1	108.9	109.5
C2	C1	O5	109.9	109.4
C1	O5	C5	112.2	114.1
C1	C2	H2	108.4	109.5
C1	C2	O2	109.6	109.5
C1	C2	C3	110.9	109.2
O2	C2	H2	109.9	109.5
C3	C2	H2	108.7	109.5
C2	O2	H2O	109.5	114.0
C3	C2	O2	109.4	109.6
C2	C3	H3	108.9	109.5
C2	C3	O3	108.3	109.5
C2	C3	C4	110.3	109.0
O3	C3	H3	110.0	109.5
C4	C3	H3	108.4	109.6
C3	O3	H3O	109.5	114.0
C4	C3	O3	110.9	109.6
C3	C4	H4	108.9	109.6
C3	C4	O4	109.9	109.5
C3	C4	C5	108.5	109.2
O4	C4	H4	110.6	109.5
C5	C4	H4	108.9	109.5
C4	O4	H4O	109.5	114.0
C5	C4	O4	110.1	109.6
C4	C5	H5	107.1	109.5
C4	C5	O5	108.3	109.4
C4	C5	C6	111.8	109.5
O5	C5	H5	108.2	109.4
C6	C5	H5	107.0	109.5
C6	C5	O5	114.2	109.4
C5	C6	H61	111.5	109.5
C5	C6	H62	111.5	109.4
C5	C6	C7	101.3	109.5
H61	C6	H62	109.5	109.4
C7	C6	H61	111.4	109.5
C7	C6	H62	111.5	109.4
C6	C7	O7A	120.7	120.0
C6	C7	O7B	118.9	120.0
O7A	C7	O7B	120.4	120.0
C7	O7B	H7OB	109.5	117.0

Torsion Angles for ZDC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H1M1	C1M	C1	H1M2	240.0	240.1
H1M1	C1M	C1	H1M3	120.0	120.0
H1M2	C1M	C1	H1M3	240.0	240.0
O5	C1	C1M	H1	240.8	240.0
C2	C1	C1M	H1	120.1	120.1
C2	C1	C1M	O5	239.3	240.1
C1M	C1	O5	C5	177.0	301.1
C1M	C1	C2	H2	294.1	182.3
C1M	C1	C2	O2	54.1	302.4
C1M	C1	C2	C3	174.9	62.4
C1	C1M	H1M1	H1M2	120.0	120.0
C1	C1M	H1M1	H1M3	240.0	240.0
H1M1	C1M	C1	H1	299.2	170.8
H1M1	C1M	C1	O5	180.0	50.8
H1M1	C1M	C1	C2	59.3	290.9
H1M2	C1M	H1M1	H1M3	120.0	120.0
C1	C1M	H1M2	H1M1	240.0	240.0
C1	C1M	H1M2	H1M3	120.0	120.0
H1M2	C1M	C1	H1	59.2	290.8
H1M2	C1M	C1	O5	300.0	170.7
H1M2	C1M	C1	C2	179.3	50.8
H1M1	C1M	H1M2	H1M3	240.0	240.0
C1	C1M	H1M3	H1M1	120.0	120.0
C1	C1M	H1M3	H1M2	240.0	240.0
H1M3	C1M	C1	H1	179.2	50.8
H1M3	C1M	C1	O5	60.0	290.8
H1M3	C1M	C1	C2	299.3	170.9
H1M1	C1M	H1M3	H1M2	120.0	120.0
H1	C1	C1M	H1M1	299.2	170.8
H1	C1	C1M	H1M2	59.2	290.8
H1	C1	C1M	H1M3	179.2	50.8
C1M	C1	H1	O5	242.0	240.0
C1M	C1	H1	C2	121.6	120.1
C2	C1	H1	O5	120.4	119.9
H1	C1	O5	C5	58.4	181.1
H1	C1	C2	H2	54.2	302.4
H1	C1	C2	O2	174.1	62.5
H1	C1	C2	C3	295.0	182.5
O5	C1	C1M	H1M1	180.0	50.8
O5	C1	C1M	H1M2	300.0	170.7
O5	C1	C1M	H1M3	60.0	290.8
C1M	C1	O5	H1	118.6	120.1
C1M	C1	O5	C2	238.4	240.1
C2	C1	O5	H1	240.2	240.0
O5	C1	C2	H2	174.5	62.3
O5	C1	C2	O2	294.5	182.4
O5	C1	C2	C3	55.3	302.4
C4	C5	O5	C1	64.1	298.9
C1	O5	C5	H5	179.8	58.9
C6	C5	O5	C1	298.9	178.9
C2	C1	C1M	H1M1	59.3	290.9
C2	C1	C1M	H1M2	179.3	50.8
C2	C1	C1M	H1M3	299.3	170.9
C1M	C1	C2	H1	239.9	239.9
C1M	C1	C2	O5	119.6	119.9
O5	C1	C2	H1	120.3	120.0
C2	C1	O5	C5	298.6	61.1
O2	C2	C1	H2	119.9	120.1
C3	C2	C1	H2	240.8	240.1
C1	C2	O2	H2O	180.0	300.0
C3	C2	C1	O2	120.9	120.0
C1	C2	C3	H3	64.8	176.9
C1	C2	C3	O3	184.4	297.0
C1	C2	C3	C4	305.9	57.0
H2	C2	C1	H1	54.2	302.4
H2	C2	C1	O5	174.5	62.3
C1	C2	H2	O2	119.8	120.1
C1	C2	H2	C3	239.4	240.3
H2	C2	O2	H2O	299.1	60.1
C3	C2	H2	O2	240.4	239.8
H2	C2	C3	H3	305.7	57.0
H2	C2	C3	O3	65.3	177.1
H2	C2	C3	C4	186.9	297.1
O2	C2	C1	H1	174.1	62.5
O2	C2	C1	O5	294.5	182.4
C1	C2	O2	H2	241.0	239.9
C1	C2	O2	C3	121.8	119.7
C3	C2	O2	H2	119.2	120.2
O2	C2	C3	H3	185.8	296.8
O2	C2	C3	O3	305.4	56.9
O2	C2	C3	C4	66.9	176.9
H2O	O2	C2	H2	299.1	60.1
C3	C2	O2	H2O	58.2	180.3
C3	C2	C1	H1	295.0	182.5
C3	C2	C1	O5	55.3	302.4
C1	C2	C3	H2	119.1	119.9
C1	C2	C3	O2	239.0	240.1
O2	C2	C3	H2	240.1	239.8
O3	C3	C2	H3	119.6	120.1
C4	C3	C2	H3	241.1	240.1
C2	C3	O3	H3O	180.0	300.1
C4	C3	C2	O3	121.6	120.0
C2	C3	C4	H4	297.9	183.1
C2	C3	C4	O4	176.6	63.0
C2	C3	C4	C5	56.2	303.0
H3	C3	C2	H2	305.7	57.0
H3	C3	C2	O2	185.8	296.8
C2	C3	H3	O3	118.6	120.1
C2	C3	H3	C4	240.0	240.4
H3	C3	O3	H3O	298.9	60.2
C4	C3	H3	O3	238.5	239.7
H3	C3	C4	H4	178.7	63.2
H3	C3	C4	O4	57.5	303.2
H3	C3	C4	C5	297.1	183.2
O3	C3	C2	H2	65.3	177.1
O3	C3	C2	O2	305.4	56.9
C2	C3	O3	H3	241.1	239.9
C2	C3	O3	C4	121.2	119.6
C4	C3	O3	H3	120.0	120.3
O3	C3	C4	H4	57.9	303.0
O3	C3	C4	O4	296.6	182.9
O3	C3	C4	C5	176.2	62.9
H3O	O3	C3	H3	298.9	60.2
C4	C3	O3	H3O	58.8	180.5
C4	C3	C2	H2	186.9	297.1
C4	C3	C2	O2	66.9	176.9
C2	C3	C4	H3	119.1	119.8
C2	C3	C4	O3	240.0	240.1
O3	C3	C4	H3	239.1	239.8
O4	C4	C3	H4	238.7	239.9
C5	C4	C3	H4	118.4	119.9
C3	C4	O4	H4O	180.0	60.0
C5	C4	C3	O4	239.7	240.0
C3	C4	C5	H5	183.5	297.7
C3	C4	C5	O5	299.9	57.6
C3	C4	C5	C6	66.5	177.6
H4	C4	C3	H3	178.7	63.2
H4	C4	C3	O3	57.9	303.0
C3	C4	H4	O4	239.2	239.9
C3	C4	H4	C5	118.1	119.8
H4	C4	O4	H4O	59.7	299.8
C5	C4	H4	O4	121.1	120.1
H4	C4	C5	H5	301.8	57.6
H4	C4	C5	O5	58.3	177.6
H4	C4	C5	C6	184.9	297.5
O4	C4	C3	H3	57.5	303.2
O4	C4	C3	O3	296.6	182.9
C3	C4	O4	H4	120.2	120.1
C3	C4	O4	C5	240.6	240.2
C5	C4	O4	H4	239.6	239.9
O4	C4	C5	H5	63.2	177.7
O4	C4	C5	O5	179.7	297.6
O4	C4	C5	C6	306.3	57.6
H4O	O4	C4	H4	59.7	299.8
C5	C4	O4	H4O	299.3	179.8
C1	O5	C5	C4	64.1	298.9
C5	C4	C3	H3	297.1	183.2
C5	C4	C3	O3	176.2	62.9
C3	C4	C5	H4	241.6	240.0
C3	C4	C5	O4	120.2	120.0
O4	C4	C5	H4	121.4	120.1
O5	C5	C4	H5	116.4	119.9
C6	C5	C4	H5	243.1	239.9
C6	C5	C4	O5	126.7	120.0
C4	C5	C6	H61	309.2	295.1
C4	C5	C6	H62	71.9	55.0
C4	C5	C6	C7	190.6	175.0
H5	C5	C4	H4	301.8	57.6
H5	C5	C4	O4	63.2	177.7
C4	C5	H5	O5	116.5	119.9
C4	C5	H5	C6	240.0	239.9
C6	C5	H5	O5	236.5	240.0
H5	C5	C6	H61	192.3	175.0
H5	C5	C6	H62	315.0	295.0
H5	C5	C6	C7	73.7	54.9
C5	O5	C1	H1	58.4	181.1
O5	C5	C4	H4	58.3	177.6
O5	C5	C4	O4	179.7	297.6
C4	C5	O5	H5	244.3	240.0
C4	C5	O5	C6	125.3	120.0
C6	C5	O5	H5	119.0	120.0
O5	C5	C6	H61	72.6	55.0
O5	C5	C6	H62	195.3	175.0
O5	C5	C6	C7	314.0	295.0
C1	O5	C5	C6	298.9	178.9
C6	C5	C4	H4	184.9	297.5
C6	C5	C4	O4	306.3	57.6
C4	C5	C6	H5	116.9	120.1
C4	C5	C6	O5	236.6	240.0
O5	C5	C6	H5	240.3	240.0
H61	C6	C5	H62	237.3	240.0
C7	C6	C5	H61	241.4	239.9
C7	C6	C5	H62	118.7	119.9
C5	C6	C7	O7A	295.1	0.1
C5	C6	C7	O7B	117.7	180.0
H61	C6	C5	H5	192.3	175.0
H61	C6	C5	O5	72.6	55.0
C5	C6	H61	H62	123.8	120.0
C5	C6	H61	C7	247.6	239.9
C7	C6	H61	H62	236.2	240.1
H61	C6	C7	O7A	176.4	239.9
H61	C6	C7	O7B	359.0	59.9
H62	C6	C5	H5	315.0	295.0
H62	C6	C5	O5	195.3	175.0
C5	C6	H62	H61	236.2	240.0
C5	C6	H62	C7	112.4	120.0
C7	C6	H62	H61	123.8	120.0
H62	C6	C7	O7A	53.8	120.0
H62	C6	C7	O7B	236.4	300.0
C7	C6	C5	H5	73.7	54.9
C7	C6	C5	O5	314.0	295.0
C5	C6	C7	H61	118.7	120.1
C5	C6	C7	H62	241.3	240.0
H61	C6	C7	H62	122.7	119.9
O7A	C7	C6	O7B	177.4	180.0
C6	C7	O7B	H7OB	177.4	180.0
O7A	C7	C6	H61	176.4	239.9
O7A	C7	C6	H62	53.8	120.0
C6	C7	O7A	O7B	182.6	180.0
O7A	C7	O7B	H7OB	0.0	360.0
O7B	C7	C6	H61	359.0	59.9
O7B	C7	C6	H62	236.4	300.0
C6	C7	O7B	O7A	177.4	180.0