PDB Chemical Component ZD6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZD6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CAM	CAK	1.531	1.530
CAM	NBD	1.485	1.469
CAK	CBC	1.517	1.531
CAB	NBD	1.478	1.469
CBC	CAO	1.523	1.530
CBC	CAL	1.529	1.531
NBD	CAN	1.497	1.468
CAO	OAT	1.415	1.428
N3	C2	1.329	1.312
N3	C4	1.356	1.342
C2	N1	1.328	1.324
CAI	C4	1.384	1.400
CAI	CAY	1.384	1.377
C4	C5	1.386	1.417
OAT	CAY	1.365	1.359
CAY	CAX	1.383	1.402
CAN	CAL	1.531	1.530
N1	C6	1.344	1.327
C5	C6	1.416	1.415
C5	CAJ	1.397	1.400
C6	NAR	1.435	1.380
CAX	CAJ	1.400	1.366
CAX	OAS	1.387	1.359
OAS	CAA	1.446	1.429
NAR	CAW	1.413	1.400
CAF	CAW	1.385	1.388
CAF	CAE	1.391	1.382
CAW	CAV	1.386	1.390
CAE	CAU	1.397	1.384
CAV	CAH	1.352	1.383
CAV	FAC	1.335	1.351
CAU	CAH	1.368	1.383
CAU	BR	1.910	1.891
CAK	H1	1.100	1.090
CAK	H2	1.100	1.090
CAM	H3	1.100	1.091
CAM	H4	1.100	1.090
CAB	H6	1.100	1.089
CAB	H7	1.101	1.090
CAB	H8	1.100	1.090
CAN	H9	1.100	1.090
CAN	H10	1.101	1.090
CAL	H11	1.100	1.090
CAL	H12	1.100	1.091
CBC	H13	1.100	1.090
CAO	H14	1.100	1.091
CAO	H15	1.100	1.090
CAI	H16	1.079	1.080
CAA	H17	1.100	1.090
CAA	H18	1.100	1.090
CAA	H19	1.100	1.090
CAJ	H20	1.080	1.080
C2	H21	1.080	1.080
NAR	H22	1.000	0.971
CAF	H23	1.080	1.080
CAE	H24	1.080	1.080
CAH	H25	1.081	1.080

Bond Angles for ZD6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CAM	CAK	CBC	110.6	109.3
CAM	CAK	H1	109.2	109.5
CAM	CAK	H2	109.2	109.6
CAM	NBD	CAN	116.8	111.2
NBD	CAM	H3	108.4	109.5
NBD	CAM	H4	108.5	109.5
CAK	CBC	CAO	110.4	109.5
CAK	CBC	CAL	106.8	109.2
CBC	CAK	H1	109.2	109.5
CBC	CAK	H2	109.2	109.5
CAK	CBC	H13	109.5	109.5
CAB	NBD	CAN	105.9	111.0
CBC	CAO	OAT	102.9	109.5
CAO	CBC	H13	109.4	109.5
CBC	CAO	H14	111.1	109.4
CBC	CAO	H15	111.1	109.5
CBC	CAL	H11	109.2	109.5
CBC	CAL	H12	109.2	109.6
NBD	CAN	CAL	113.5	109.5
NBD	CAN	H9	108.4	109.5
NBD	CAN	H10	108.4	109.4
CAO	OAT	CAY	117.6	117.0
OAT	CAO	H14	111.1	109.5
OAT	CAO	H15	111.1	109.5
N3	C2	N1	121.2	122.9
N3	C2	H21	119.4	118.5
C2	N1	C6	121.6	121.5
N1	C2	H21	119.4	118.6
CAI	C4	C5	119.9	119.4
C4	CAI	H16	119.6	120.2
CAI	CAY	CAX	120.1	120.7
C4	C5	C6	118.0	118.1
OAT	CAY	CAX	116.5	119.6
CAY	CAX	CAJ	119.4	120.7
CAY	CAX	OAS	116.0	119.7
CAL	CAN	H9	108.5	109.5
CAL	CAN	H10	108.4	109.5
CAN	CAL	H11	109.2	109.5
CAN	CAL	H12	109.2	109.5
C5	C6	N1	118.7	118.3
N1	C6	NAR	120.0	120.8
C5	C6	NAR	121.3	120.9
C5	CAJ	H20	119.8	120.2
C6	NAR	CAW	121.4	120.1
C6	NAR	H22	119.3	120.0
OAS	CAX	CAJ	124.6	119.6
CAX	CAJ	H20	119.8	120.2
CAX	OAS	CAA	119.0	117.0
OAS	CAA	H17	109.5	109.5
OAS	CAA	H18	109.5	109.5
OAS	CAA	H19	109.5	109.4
NAR	CAW	CAV	119.6	120.1
CAW	NAR	H22	119.3	120.0
CAF	CAW	CAV	119.8	119.9
CAF	CAE	CAU	119.0	120.1
CAE	CAF	H23	120.3	120.0
CAF	CAE	H24	120.5	120.0
CAW	CAV	CAH	121.1	119.9
CAW	CAV	FAC	123.8	120.1
CAE	CAU	CAH	120.9	120.1
CAE	CAU	BR	125.1	119.9
CAU	CAE	H24	120.5	119.9
CAV	CAH	H25	120.1	120.0
BR	CAU	CAH	114.0	119.9
CAU	CAH	H25	120.1	120.0
H1	CAK	H2	109.5	109.5
H3	CAM	H4	109.5	109.5
H6	CAB	H7	109.5	109.5
H6	CAB	H8	109.4	109.5
H7	CAB	H8	109.4	109.4
H9	CAN	H10	109.5	109.5
H11	CAL	H12	109.5	109.5
H14	CAO	H15	109.5	109.4
H17	CAA	H18	109.4	109.5
H17	CAA	H19	109.5	109.4
H18	CAA	H19	109.5	109.5

Torsion Angles for ZD6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CAM	CAK	CBC	CAO	175.2	182.4
CAM	CAK	CBC	CAL	296.4	302.3
CBC	CAK	CAM	H1	239.8	240.1
CBC	CAK	CAM	H2	120.2	119.9
CAM	CAK	CBC	H13	54.7	62.4
H1	CAK	CAM	H2	240.3	239.9
NBD	CAM	CAK	CBC	52.2	59.2
NBD	CAM	CAK	H1	172.4	179.1
NBD	CAM	CAK	H2	292.1	299.2
CAB	NBD	CAM	CAN	243.4	235.9
CAM	NBD	CAN	CAL	39.3	61.7
CAM	NBD	CAN	H9	159.9	181.8
CAM	NBD	CAN	H10	278.8	301.7
H3	CAM	NBD	H4	118.8	120.0
CAM	CAK	CBC	H1	120.2	119.9
CAM	CAK	CBC	H2	239.8	240.0
CAK	CBC	CAO	OAT	197.1	185.0
CAO	CBC	CAK	H13	120.5	120.1
CAK	CBC	CAO	H14	316.1	305.0
CAK	CBC	CAO	H15	78.2	65.0
CAK	CBC	CAL	H11	183.2	297.7
CAK	CBC	CAL	H12	302.9	177.6
H1	CAK	CBC	H2	119.7	120.0
CAM	NBD	CAB	CAN	123.9	124.2
CAB	NBD	CAM	H3	83.2	54.2
CAB	NBD	CAM	H4	324.4	294.1
CAB	NBD	CAN	CAL	155.1	185.8
CAB	NBD	CAN	H9	275.7	305.9
CAB	NBD	CAN	H10	34.5	65.8
CAK	CBC	CAO	CAL	118.4	119.7
CAO	CBC	CAK	H1	55.1	62.5
CAO	CBC	CAK	H2	295.4	302.5
CAK	CBC	CAO	H13	239.4	239.9
CAO	CBC	CAL	H11	303.8	57.6
CAO	CBC	CAL	H12	63.6	297.5
CBC	CAO	OAT	CAY	177.4	180.0
OAT	CAO	CBC	H14	241.0	240.0
OAT	CAO	CBC	H15	118.9	120.1
H14	CAO	CBC	H15	237.9	240.1
CAK	CBC	CAL	CAO	239.4	240.1
CAL	CBC	CAK	H1	176.2	182.4
CAL	CBC	CAK	H2	56.6	62.4
CAK	CBC	CAL	H13	118.4	120.0
CBC	CAL	CAN	H9	188.3	180.8
CBC	CAL	CAN	H10	69.5	60.8
CAN	CAL	CBC	H11	239.9	120.0
CAN	CAL	CBC	H12	120.1	240.1
H11	CAL	CBC	H12	240.3	120.1
CAN	NBD	CAM	H3	199.8	178.3
CAN	NBD	CAM	H4	81.0	58.3
CAL	CAN	NBD	H9	239.4	240.0
CAL	CAN	NBD	H10	120.6	120.0
NBD	CAN	CAL	H11	188.7	60.8
NBD	CAN	CAL	H12	69.0	180.8
H9	CAN	NBD	H10	241.2	240.0
OAT	CAO	CBC	H13	317.7	305.1
CBC	CAO	OAT	H14	119.0	120.0
CBC	CAO	OAT	H15	241.0	239.9
CAO	OAT	CAY	CAX	167.3	179.9
H14	CAO	OAT	H15	122.1	120.0
N3	C2	N1	C6	1.8	0.0
N1	C2	N3	H21	180.0	180.0
N3	C4	CAI	H16	359.2	0.1
N3	C4	C5	C6	1.6	360.0
N3	C2	N1	H21	180.0	180.0
C5	C6	N1	C2	359.0	0.0
C2	N1	C6	NAR	179.1	180.3
C4	CAI	CAY	CAX	0.0	0.3
CAI	C4	C5	C6	180.1	180.0
OAT	CAY	CAI	CAX	180.5	179.7
CAI	CAY	CAX	CAJ	359.5	359.6
CAI	CAY	CAX	OAS	180.1	179.8
C5	C4	CAI	H16	180.8	180.0
C4	C5	C6	N1	359.3	360.0
C4	C5	C6	NAR	179.2	179.7
C4	C5	CAJ	H20	180.5	180.3
CAY	OAT	CAO	H14	58.5	60.0
CAY	OAT	CAO	H15	296.4	300.0
CAI	CAY	OAT	CAX	179.6	180.3
OAT	CAY	CAX	CAJ	179.1	180.0
OAT	CAY	CAX	OAS	359.7	0.1
OAS	CAX	CAY	CAJ	180.6	180.1
CAY	CAX	CAJ	H20	180.2	180.0
CAY	CAX	OAS	CAA	188.3	180.0
CAK	CBC	CAL	CAN	63.1	57.7
CBC	CAL	CAN	H11	120.1	240.0
CBC	CAL	CAN	H12	239.9	120.0
NBD	CAN	CAL	H9	120.6	120.0
NBD	CAN	CAL	H10	239.4	240.0
H9	CAN	CAL	H10	118.8	120.0
H11	CAL	CAN	H12	119.7	240.0
C6	N1	C2	H21	181.8	180.0
C5	C6	N1	NAR	179.9	179.7
N1	C6	NAR	CAW	8.4	6.2
N1	C6	NAR	H22	188.4	186.3
C2	N1	C6	C5	359.0	0.0
N1	C6	C5	NAR	180.1	180.3
C6	C5	CAJ	H20	359.4	0.0
C5	C6	NAR	CAW	188.5	186.5
C5	C6	NAR	H22	8.5	6.6
CAI	C4	C5	CAJ	359.0	359.7
CAX	CAJ	C5	H20	180.0	179.9
C5	C6	NAR	N1	180.1	180.3
C6	NAR	CAW	CAV	61.1	198.7
CAW	NAR	C6	H22	180.0	180.0
CAY	CAX	CAJ	OAS	180.7	180.1
C5	CAJ	CAX	H20	180.0	180.1
CAJ	CAX	OAS	CAA	8.9	0.1
CAY	CAX	OAS	CAJ	179.4	179.9
OAS	CAX	CAJ	H20	359.6	359.9
CAX	OAS	CAA	H17	180.0	59.9
CAX	OAS	CAA	H18	300.0	180.0
CAX	OAS	CAA	H19	60.0	300.0
CAA	OAS	CAX	CAJ	8.9	0.1
H17	CAA	OAS	H18	240.0	239.9
H17	CAA	OAS	H19	120.0	120.0
H18	CAA	OAS	H19	240.0	240.0
C6	NAR	CAW	H22	180.0	180.0
CAF	CAW	NAR	CAV	178.5	180.3
NAR	CAW	CAV	CAH	178.7	179.7
NAR	CAW	CAV	FAC	359.4	360.0
NAR	CAW	CAF	CAV	181.5	179.7
CAF	CAW	NAR	H22	59.6	198.9
CAF	CAW	CAV	CAH	0.2	359.5
CAF	CAW	CAV	FAC	180.9	179.7
CAE	CAF	CAW	CAV	359.9	0.3
CAF	CAE	CAU	CAH	0.7	0.0
CAF	CAE	CAU	BR	180.9	180.1
CAU	CAE	CAF	H24	180.0	180.0
CAV	CAW	NAR	H22	241.2	18.7
CAW	CAV	CAH	H25	180.1	180.3
CAU	CAE	CAF	H23	179.7	180.0
CAF	CAE	CAU	H24	180.0	180.0
BR	CAU	CAE	CAH	180.2	180.0
CAE	CAU	CAH	H25	179.4	180.0
CAW	CAV	CAH	FAC	180.7	180.3
CAU	CAH	CAV	H25	180.0	180.3
CAW	CAV	FAC	CAH	179.3	179.7
FAC	CAV	CAH	H25	359.5	360.0
CAW	CAV	CAH	CAU	0.1	0.6
CAE	CAU	CAH	BR	180.2	180.0
CAH	CAU	CAE	H24	180.7	180.0
CAV	CAH	CAU	H25	180.0	179.7
CAE	CAU	BR	CAH	179.8	180.0
BR	CAU	CAE	H24	0.9	0.0
BR	CAU	CAH	H25	359.2	360.0
CAM	CAK	H1	CBC	238.9	240.2
CAM	CAK	H1	H2	119.4	120.2
H1	CAK	CBC	CAO	55.1	62.5
H1	CAK	CBC	CAL	176.2	182.4
CBC	CAK	H1	H2	240.5	240.0
H1	CAK	CBC	H13	294.5	302.4
CAM	CAK	H2	CBC	121.1	119.8
CAM	CAK	H2	H1	240.6	239.9
H2	CAK	CBC	CAO	295.4	302.5
H2	CAK	CBC	CAL	56.6	62.4
CBC	CAK	H2	H1	119.5	120.1
H2	CAK	CBC	H13	174.9	182.4
H3	CAM	CAK	CBC	172.8	179.2
H3	CAM	CAK	H1	293.0	299.1
H3	CAM	CAK	H2	52.6	59.2
H3	CAM	NBD	CAN	199.8	178.3
NBD	CAM	H3	H4	241.8	240.0
H4	CAM	CAK	CBC	291.6	299.2
H4	CAM	CAK	H1	51.8	59.1
H4	CAM	CAK	H2	171.4	179.2
H4	CAM	NBD	CAN	81.0	58.3
NBD	CAM	H4	H3	118.2	120.0
H6	CAB	NBD	CAN	56.1	295.8
H7	CAB	H6	H8	119.9	120.0
H7	CAB	NBD	CAN	176.1	55.8
H6	CAB	H7	H8	240.1	240.0
H8	CAB	NBD	CAN	296.1	175.7
H6	CAB	H8	H7	120.0	120.0
NBD	CAN	H9	CAL	236.3	239.9
NBD	CAN	H9	H10	118.1	119.9
CAL	CAN	H9	H10	241.8	240.0
H9	CAN	CAL	H11	68.2	300.8
H9	CAN	CAL	H12	308.4	60.8
NBD	CAN	H10	CAL	123.7	120.0
NBD	CAN	H10	H9	241.9	240.0
CAL	CAN	H10	H9	118.2	120.0
H10	CAN	CAL	H11	309.3	180.8
H10	CAN	CAL	H12	189.6	300.8
CBC	CAL	H11	H12	119.6	239.9
H11	CAL	CAN	H9	68.2	300.8
H11	CAL	CAN	H10	309.3	180.8
CAN	CAL	H11	H12	240.4	120.0
CBC	CAL	H12	H11	240.4	120.1
H12	CAL	CAN	H9	308.4	60.8
H12	CAL	CAN	H10	189.6	300.8
CAN	CAL	H12	H11	119.6	239.9
CAK	CBC	H13	CAO	121.2	120.1
CAK	CBC	H13	CAL	243.3	240.3
H13	CBC	CAK	H1	294.5	302.4
H13	CBC	CAK	H2	174.9	182.4
H13	CBC	CAO	OAT	317.7	305.1
H13	CBC	CAO	H14	76.7	65.1
H13	CBC	CAO	H15	198.8	185.1
H13	CBC	CAL	H11	64.8	177.7
H13	CBC	CAL	H12	184.5	57.6
CBC	CAO	H14	OAT	246.0	240.0
H14	CAO	CBC	H13	76.7	65.1
CBC	CAO	H14	H15	123.0	120.0
H14	CAO	OAT	CAY	58.5	60.0
OAT	CAO	H14	H15	237.0	240.0
CBC	CAO	H15	OAT	113.9	120.1
H15	CAO	CBC	H13	198.8	185.1
CBC	CAO	H15	H14	236.9	240.1
H15	CAO	OAT	CAY	296.4	300.0
OAT	CAO	H15	H14	123.0	120.0
H16	CAI	C4	C5	180.8	180.0
H16	CAI	CAY	CAX	180.0	180.3
OAS	CAA	H17	H18	120.0	120.1
OAS	CAA	H17	H19	240.0	240.1
H18	CAA	H17	H19	120.0	120.0
OAS	CAA	H18	H17	240.0	239.9
OAS	CAA	H18	H19	120.0	120.0
H17	CAA	H18	H19	240.0	240.0
OAS	CAA	H19	H17	120.0	120.0
OAS	CAA	H19	H18	240.0	240.0
H17	CAA	H19	H18	120.0	120.0
N3	C2	H21	N1	180.0	180.0
H21	C2	N1	C6	181.8	180.0
C6	NAR	H22	CAW	180.0	180.0
H22	NAR	CAW	CAV	241.2	18.7
H23	CAF	CAW	CAV	179.9	180.2
H23	CAF	CAE	CAU	179.7	180.0
H23	CAF	CAE	H24	359.7	0.0
CAF	CAE	H24	CAU	180.0	180.0
H24	CAE	CAF	H23	359.7	0.0
H24	CAE	CAU	CAH	180.7	180.0
H24	CAE	CAU	BR	0.9	0.0