PDB Chemical Component ZAP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZAP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.397	1.482
C1	N1	1.340	1.301
C1	N2	1.333	1.378
C2	C3	1.379	1.394
C2	C7	1.393	1.394
C3	C4	1.380	1.380
C3	H3	1.102	1.079
C4	C5	1.371	1.382
C4	H4	1.103	1.080
C5	C6	1.377	1.384
C5	C8	1.532	1.507
C6	C7	1.405	1.379
C6	H6	1.103	1.080
C7	H7	1.103	1.080
C8	N3	1.440	1.463
C8	P	1.843	1.822
C8	H8	1.114	1.090
C9	N3	1.330	1.348
C9	O3	1.227	1.215
C9	O4	1.428	1.345
C10	C11	1.536	1.507
C10	O4	1.459	1.452
C10	H101	1.115	1.089
C10	H102	1.115	1.089
C11	C12	1.386	1.383
C11	C16	1.392	1.381
C12	C13	1.384	1.382
C12	H12	1.102	1.080
C13	C14	1.386	1.382
C13	H13	1.103	1.081
C14	C15	1.380	1.382
C14	H14	1.103	1.080
C15	C16	1.383	1.382
C15	H15	1.103	1.081
C16	H16	1.104	1.079
N1	HN1	1.020	0.970
N2	HN21	1.020	0.970
N2	HN22	1.020	0.970
N3	HN3	1.019	0.969
O1P	P	1.475	1.480
O2P	P	1.482	1.610
O2P	HOP2	0.950	0.967
O3P	P	1.542	1.610
O3P	HOP3	0.950	0.967

Bond Angles for ZAP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	N1	121.0	120.0
C2	C1	N2	123.0	120.0
C1	C2	C3	120.1	120.1
C1	C2	C7	123.0	120.1
N1	C1	N2	115.9	120.0
C1	N1	HN1	77.3	120.0
C1	N2	HN21	122.9	120.0
C1	N2	HN22	107.5	120.0
C3	C2	C7	116.8	119.8
C2	C3	C4	121.2	119.8
C2	C3	H3	119.4	120.1
C2	C7	C6	122.8	119.8
C2	C7	H7	118.1	120.1
C4	C3	H3	119.5	120.1
C3	C4	C5	121.2	120.1
C3	C4	H4	119.7	120.0
C5	C4	H4	119.1	119.9
C4	C5	C6	120.1	120.3
C4	C5	C8	114.9	119.9
C6	C5	C8	125.0	119.9
C5	C6	C7	117.9	120.2
C5	C6	H6	120.1	119.9
C5	C8	N3	113.9	109.5
C5	C8	P	120.6	109.5
C5	C8	H8	97.0	109.5
C7	C6	H6	122.0	119.9
C6	C7	H7	119.1	120.1
N3	C8	P	109.7	109.5
N3	C8	H8	111.5	109.5
C8	N3	C9	114.4	120.0
C8	N3	HN3	126.3	120.0
P	C8	H8	102.7	109.4
C8	P	O1P	111.0	109.5
C8	P	O2P	113.0	109.4
C8	P	O3P	113.5	109.5
N3	C9	O3	119.6	120.0
N3	C9	O4	115.9	120.0
C9	N3	HN3	119.3	120.0
O3	C9	O4	113.7	120.0
C9	O4	C10	122.1	120.0
C11	C10	O4	113.1	109.5
C11	C10	H101	110.9	109.5
C11	C10	H102	110.9	109.4
C10	C11	C12	119.6	119.9
C10	C11	C16	121.6	120.1
O4	C10	H101	110.9	109.5
O4	C10	H102	110.9	109.4
H101	C10	H102	99.4	109.5
C12	C11	C16	118.7	120.0
C11	C12	C13	120.7	120.0
C11	C12	H12	119.7	120.0
C11	C16	C15	120.8	120.0
C11	C16	H16	120.0	120.0
C13	C12	H12	119.6	120.0
C12	C13	C14	119.7	120.0
C12	C13	H13	120.1	120.1
C14	C13	H13	120.2	119.9
C13	C14	C15	120.2	120.0
C13	C14	H14	120.1	120.0
C15	C14	H14	119.7	120.0
C14	C15	C16	119.7	120.0
C14	C15	H15	120.0	120.0
C16	C15	H15	120.2	120.0
C15	C16	H16	119.2	120.0
HN21	N2	HN22	107.4	120.0
O1P	P	O2P	111.3	109.4
O1P	P	O3P	97.7	109.4
P	O2P	HOP2	113.0	106.8
O2P	P	O3P	109.4	109.5
P	O3P	HOP3	113.5	106.7

Torsion Angles for ZAP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	C2	N2	183.3	180.1
C2	C1	N1	HN1	0.6	360.0
C2	C1	N2	HN21	180.0	180.0
C2	C1	N2	HN22	54.7	359.8
C3	C2	C1	C7	182.8	180.3
C1	C2	C3	C4	178.3	180.0
C1	C2	C3	H3	358.2	360.0
C1	C2	C7	C6	181.7	179.7
C1	C2	C7	H7	1.7	0.3
C2	C1	N1	N2	176.9	179.9
N1	C1	C2	C3	1.5	0.0
N1	C1	C2	C7	178.7	179.7
N1	C1	N2	HN21	356.9	360.0
N1	C1	N2	HN22	231.6	179.8
C2	C1	N2	N1	183.2	180.1
N2	C1	C2	C3	178.1	180.0
N2	C1	C2	C7	355.4	359.7
N2	C1	N1	HN1	183.7	180.0
HN21	N2	C1	HN22	125.3	180.2
C3	C2	C1	N1	1.5	0.0
C3	C2	C1	N2	178.1	180.0
C1	C2	C3	C7	177.4	179.7
C3	C2	C7	C6	359.0	359.4
C3	C2	C7	H7	179.1	180.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C5	0.5	0.0
C2	C3	C4	H4	180.5	180.0
C7	C2	C1	N1	178.7	179.7
C7	C2	C1	N2	355.4	359.7
C1	C2	C7	C3	182.7	180.3
C7	C2	C3	C4	0.9	0.3
C7	C2	C3	H3	180.8	180.3
C5	C6	C7	C2	359.7	0.7
C2	C7	C6	H6	179.8	180.3
C6	C7	C2	H7	180.0	179.4
C4	C3	C2	C7	0.9	0.3
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	C6	358.2	0.1
C3	C4	C5	C8	175.3	180.0
H3	C3	C2	C7	180.8	180.3
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C5	180.5	180.0
H3	C3	C4	H4	0.5	360.0
C5	C4	C3	H3	180.5	180.0
C3	C4	C5	H4	180.0	180.0
C6	C5	C4	C8	183.0	180.1
C4	C5	C6	C7	1.6	359.6
C4	C5	C6	H6	181.6	180.0
C4	C5	C8	N3	276.2	30.0
C4	C5	C8	P	142.6	270.0
C4	C5	C8	H8	33.4	150.0
H4	C4	C3	H3	0.5	360.0
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	C6	178.2	180.1
H4	C4	C5	C8	355.3	360.0
C2	C7	C6	C5	359.7	0.7
C6	C5	C4	H4	178.2	180.1
C4	C5	C6	C8	176.7	179.9
C6	C5	C8	N3	93.0	209.9
C6	C5	C8	P	319.5	89.9
C6	C5	C8	H8	210.3	330.0
C7	C6	C5	H6	180.1	179.6
C5	C6	C7	H7	179.7	180.1
C8	C5	C4	H4	355.3	360.0
C4	C5	C8	C6	183.1	180.1
C8	C5	C6	C7	184.9	179.7
C8	C5	C6	H6	4.9	0.1
N3	C8	C5	P	133.5	120.0
N3	C8	C5	H8	242.7	240.0
C5	C8	N3	C9	142.4	150.0
C5	C8	N3	HN3	322.5	330.0
P	C8	C5	H8	109.2	119.9
C5	C8	P	O1P	177.4	300.0
C5	C8	P	O2P	303.3	60.0
C5	C8	P	O3P	68.5	180.0
C2	C7	C6	H7	180.0	180.6
C7	C6	C5	C8	184.9	179.7
C5	C6	C7	H6	179.9	180.4
H6	C6	C5	C8	4.9	0.1
C5	C6	H6	C7	180.1	179.6
H6	C6	C7	H7	359.8	359.7
C2	C7	H7	C6	180.0	179.4
H7	C7	C6	H6	359.8	359.7
C5	C8	N3	P	221.5	240.0
C5	C8	N3	H8	108.5	120.0
P	C8	N3	H8	247.0	240.0
N3	C8	P	O1P	42.1	180.0
N3	C8	P	O2P	168.1	300.0
N3	C8	P	O3P	293.3	60.0
C8	N3	C9	O3	311.2	360.0
C8	N3	C9	O4	169.0	179.9
C9	N3	C8	HN3	180.0	180.0
C5	C8	P	N3	135.2	120.0
C5	C8	P	H8	253.9	240.0
N3	C8	P	H8	118.6	120.0
P	C8	N3	C9	280.9	270.0
P	C8	N3	HN3	100.9	90.0
O1P	P	C8	O2P	234.1	240.0
O1P	P	C8	O3P	108.8	120.0
C8	P	O2P	HOP2	180.0	180.0
O2P	P	C8	O3P	234.8	240.0
C8	P	O3P	HOP3	180.0	300.0
C5	C8	H8	N3	240.9	240.0
C5	C8	H8	P	123.6	120.0
N3	C8	H8	P	242.7	240.0
H8	C8	N3	C9	33.9	30.0
H8	C8	N3	HN3	213.9	210.0
H8	C8	P	O1P	283.5	60.0
H8	C8	P	O2P	49.4	180.0
H8	C8	P	O3P	174.7	300.0
C9	N3	C8	P	280.9	270.0
C9	N3	C8	H8	33.9	30.0
C8	N3	C9	HN3	180.0	180.0
O3	C9	N3	O4	142.2	180.1
N3	C9	O4	C10	36.1	180.0
N3	C9	O3	O4	217.0	179.9
O3	C9	N3	HN3	131.2	180.0
O3	C9	O4	C10	251.7	359.9
N3	C9	O4	O3	144.4	180.1
O4	C9	N3	HN3	349.0	359.9
C11	C10	O4	C9	88.2	180.0
C9	O4	C10	H101	323.0	300.1
C9	O4	C10	H102	213.5	60.1
C9	O4	C10	C11	88.2	180.0
O4	C10	C11	H101	234.8	120.0
O4	C10	C11	H102	125.3	240.1
H101	C10	C11	H102	250.6	120.0
C12	C11	C10	C16	181.0	180.3
C10	C11	C12	C13	179.5	180.0
C10	C11	C12	H12	359.6	360.0
C10	C11	C16	C15	180.5	179.8
C10	C11	C16	H16	0.5	0.3
C11	C10	O4	H101	125.2	240.0
C11	C10	O4	H102	234.7	119.9
O4	C10	C11	C12	149.5	90.0
O4	C10	C11	C16	328.5	269.8
H101	C10	O4	H102	109.5	240.0
C11	C10	H101	O4	233.6	120.0
C11	C10	H101	H102	116.8	240.0
H101	C10	C11	C12	274.8	330.0
H101	C10	C11	C16	93.7	149.7
O4	C10	H101	H102	243.2	120.0
C11	C10	H102	O4	126.5	240.0
C11	C10	H102	H101	243.3	120.0
H102	C10	C11	C12	24.2	210.0
H102	C10	C11	C16	203.2	29.7
O4	C10	H102	H101	116.8	240.0
C12	C11	C10	O4	149.5	90.0
C12	C11	C10	H101	274.8	330.0
C12	C11	C10	H102	24.2	210.0
C10	C11	C12	C16	179.0	179.7
C12	C11	C16	C15	359.5	359.5
C12	C11	C16	H16	179.5	180.0
C13	C12	C11	H12	179.9	180.0
C11	C12	C13	C14	359.4	360.0
C11	C12	C13	H13	179.5	179.9
C16	C11	C10	O4	328.5	269.8
C16	C11	C10	H101	93.7	149.7
C16	C11	C10	H102	203.2	29.7
C10	C11	C16	C12	181.0	180.3
C16	C11	C12	C13	0.5	0.3
C16	C11	C12	H12	180.6	180.3
C14	C15	C16	C11	0.6	0.5
C11	C16	C15	H15	180.5	180.3
C15	C16	C11	H16	180.0	179.5
C13	C12	C11	C16	0.5	0.3
C11	C12	C13	H12	180.1	180.0
C14	C13	C12	H13	180.0	180.0
C12	C13	C14	C15	0.7	0.0
C12	C13	C14	H14	180.7	180.0
H12	C12	C11	C16	180.6	180.3
C11	C12	H12	C13	179.9	180.0
H12	C12	C13	C14	179.3	180.0
H12	C12	C13	H13	359.4	360.0
C14	C13	C12	H12	179.3	180.0
C12	C13	C14	H13	180.0	180.0
C15	C14	C13	H14	179.9	180.1
C13	C14	C15	C16	359.3	359.8
C13	C14	C15	H15	179.4	180.0
H13	C13	C12	H12	359.4	360.0
C12	C13	H13	C14	180.0	180.0
H13	C13	C14	C15	180.6	180.0
H13	C13	C14	H14	0.7	360.0
C11	C16	C15	C14	0.6	0.5
C15	C14	C13	H13	180.6	180.0
C13	C14	C15	H14	180.1	179.9
C16	C15	C14	H15	180.0	179.8
C14	C15	C16	H16	180.6	179.9
H14	C14	C13	H13	0.7	360.0
C13	C14	H14	C15	179.9	180.1
H14	C14	C15	C16	179.3	179.8
H14	C14	C15	H15	359.3	0.0
C11	C16	C15	H16	180.0	180.5
C16	C15	C14	H14	179.3	179.8
C14	C15	C16	H15	180.0	180.2
H15	C15	C14	H14	359.3	0.0
C14	C15	H15	C16	180.0	179.8
H15	C15	C16	H16	0.5	359.8
C11	C16	H16	C15	180.0	179.5
H16	C16	C15	H15	0.5	359.8
HN1	N1	C1	N2	183.7	180.0
C1	N2	HN21	HN22	234.7	179.8
C1	N2	HN22	HN21	134.1	180.2
HN3	N3	C8	P	100.9	90.0
HN3	N3	C8	H8	213.9	210.0
C8	N3	HN3	C9	180.0	180.0
HN3	N3	C9	O3	131.2	180.0
HN3	N3	C9	O4	349.0	359.9
O1P	P	C8	H8	283.5	60.0
C8	P	O1P	O2P	126.9	120.0
C8	P	O1P	O3P	241.2	240.0
O1P	P	O2P	HOP2	305.7	300.1
O2P	P	O1P	O3P	114.3	120.0
O1P	P	O3P	HOP3	63.1	179.9
O2P	P	C8	H8	49.4	180.0
C8	P	O2P	O1P	234.2	240.0
C8	P	O2P	O3P	127.4	120.0
O1P	P	O2P	O3P	253.2	240.1
O2P	P	O3P	HOP3	307.2	60.0
HOP2	O2P	P	O3P	52.5	60.0
O3P	P	C8	H8	174.7	300.0
C8	P	O3P	O1P	116.9	120.1
C8	P	O3P	O2P	232.8	240.0
O1P	P	O3P	O2P	115.9	120.0
O3P	P	O2P	HOP2	52.5	60.0