PDB Chemical Component ZAN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ZAN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N1 |
1.327 |
1.320 |
| C2 |
N3 |
1.323 |
1.317 |
| O2' |
C2' |
1.426 |
1.429 |
| N1 |
C6 |
1.335 |
1.330 |
| N3 |
C4 |
1.341 |
1.329 |
| C2' |
C1' |
1.541 |
1.550 |
| C2' |
C3' |
1.529 |
1.548 |
| C6 |
N6 |
1.392 |
1.384 |
| C6 |
C5 |
1.408 |
1.405 |
| C4 |
C5 |
1.411 |
1.405 |
| C4 |
N9 |
1.364 |
1.372 |
| O3' |
C3' |
1.432 |
1.429 |
| C1' |
N9 |
1.454 |
1.464 |
| C1' |
O4' |
1.443 |
1.444 |
| C5 |
N7 |
1.358 |
1.355 |
| C3' |
C4' |
1.537 |
1.541 |
| N9 |
C8 |
1.371 |
1.363 |
| O2B |
PB |
1.602 |
1.480 |
| N7 |
C8 |
1.312 |
1.301 |
| C4' |
O4' |
1.445 |
1.438 |
| C4' |
C5' |
1.529 |
1.530 |
| PB |
O1B |
1.481 |
1.610 |
| PB |
N3A |
1.689 |
1.682 |
| PB |
O3B |
1.595 |
1.610 |
| N3A |
PA |
1.699 |
1.683 |
| O3B |
PG |
1.601 |
1.609 |
| C5' |
O5' |
1.426 |
1.429 |
| O5' |
PA |
1.581 |
1.610 |
| PA |
O2A |
1.596 |
1.480 |
| PA |
O1A |
1.480 |
1.610 |
| O3G |
PG |
1.596 |
1.480 |
| PG |
O1G |
1.483 |
1.610 |
| PG |
O2G |
1.591 |
1.610 |
| O1A |
H1 |
0.950 |
0.967 |
| O1B |
H2 |
0.950 |
0.967 |
| O1G |
H3 |
0.949 |
0.967 |
| O2G |
H4 |
0.950 |
0.967 |
| N3A |
H5 |
1.000 |
1.009 |
| C5' |
H6 |
1.100 |
1.089 |
| C5' |
H7 |
1.100 |
1.090 |
| C4' |
H8 |
1.100 |
1.090 |
| C3' |
H9 |
1.100 |
1.090 |
| O3' |
H10 |
0.950 |
0.967 |
| C2' |
H11 |
1.100 |
1.089 |
| O2' |
H12 |
0.950 |
0.968 |
| C1' |
H13 |
1.101 |
1.090 |
| C8 |
H14 |
1.080 |
1.081 |
| N6 |
H15 |
1.000 |
0.970 |
| N6 |
H16 |
1.000 |
0.970 |
| C2 |
H17 |
1.080 |
1.080 |
Bond Angles for ZAN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N3 |
C4 |
119.2 |
120.6 |
| N3 |
C2 |
H17 |
118.7 |
118.7 |
| O2' |
C2' |
C1' |
110.8 |
110.9 |
| O2' |
C2' |
H11 |
113.1 |
110.8 |
| C2' |
C1' |
N9 |
107.1 |
110.6 |
| C1' |
C2' |
H11 |
111.2 |
110.9 |
| C2' |
C1' |
H13 |
109.5 |
110.6 |
| C2' |
C3' |
H9 |
111.0 |
110.5 |
| C6 |
N6 |
H15 |
109.5 |
120.0 |
| C6 |
N6 |
H16 |
109.5 |
120.0 |
| O3' |
C3' |
H9 |
112.5 |
110.5 |
| C1' |
N9 |
C8 |
128.1 |
126.3 |
| N9 |
C1' |
H13 |
110.7 |
110.6 |
| C3' |
C4' |
H8 |
111.2 |
110.0 |
| N9 |
C8 |
H14 |
125.3 |
125.0 |
| O2B |
PB |
N3A |
108.8 |
109.5 |
| O2B |
PB |
O3B |
108.5 |
109.5 |
| N7 |
C8 |
H14 |
125.3 |
125.0 |
| O4' |
C4' |
H8 |
112.7 |
109.9 |
| C4' |
C5' |
H6 |
110.4 |
109.5 |
| C4' |
C5' |
H7 |
110.4 |
109.4 |
| O1B |
PB |
N3A |
114.5 |
109.5 |
| O1B |
PB |
O3B |
107.2 |
109.4 |
| PB |
O1B |
H2 |
109.5 |
114.0 |
| N3A |
PB |
O3B |
105.2 |
109.5 |
| PB |
N3A |
H5 |
105.7 |
111.0 |
| PB |
O3B |
PG |
132.6 |
134.0 |
| O1A |
PA |
O2A |
110.7 |
109.4 |
| PA |
O1A |
H1 |
109.5 |
114.0 |
| O1G |
PG |
O2G |
111.2 |
109.5 |
| PG |
O1G |
H3 |
109.5 |
114.0 |
| PG |
O2G |
H4 |
109.5 |
114.1 |
| H6 |
C5' |
H7 |
109.5 |
109.5 |
| H15 |
N6 |
H16 |
109.5 |
120.0 |
Torsion Angles for ZAN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
C1' |
N9 |
207.5 |
273.7 |
| C1' |
C2' |
O2' |
H11 |
125.7 |
123.7 |
| O2' |
C2' |
C1' |
H13 |
327.6 |
36.6 |
| O2' |
C2' |
C3' |
H9 |
165.2 |
102.3 |
| N1 |
C6 |
N6 |
H15 |
0.0 |
180.0 |
| N1 |
C6 |
N6 |
H16 |
120.0 |
0.0 |
| C4 |
N3 |
C2 |
H17 |
179.9 |
179.7 |
| O2' |
C2' |
C1' |
H11 |
233.3 |
236.4 |
| C1' |
C2' |
C3' |
H9 |
281.8 |
220.5 |
| C2' |
C1' |
N9 |
C8 |
276.6 |
265.0 |
| N9 |
C1' |
C2' |
H13 |
239.9 |
237.1 |
| O3' |
C3' |
C2' |
H9 |
234.7 |
237.4 |
| C2' |
C3' |
C4' |
H8 |
82.5 |
117.5 |
| H15 |
N6 |
C6 |
H16 |
240.0 |
180.0 |
| C4 |
N9 |
C1' |
H13 |
335.5 |
321.9 |
| C4 |
N9 |
C8 |
H14 |
180.6 |
180.2 |
| C2' |
C3' |
O3' |
H9 |
124.5 |
122.6 |
| O3' |
C3' |
C4' |
H8 |
325.7 |
358.6 |
| N9 |
C1' |
C2' |
H11 |
334.2 |
37.3 |
| C2' |
C1' |
N9 |
H13 |
119.3 |
122.9 |
| C1' |
N9 |
C8 |
H14 |
359.0 |
0.1 |
| C1' |
O4' |
C4' |
H8 |
262.2 |
266.9 |
| C5 |
N7 |
C8 |
H14 |
179.2 |
180.0 |
| O4' |
C4' |
C3' |
H8 |
238.0 |
240.5 |
| C3' |
C4' |
C5' |
H6 |
169.5 |
64.3 |
| C3' |
C4' |
C5' |
H7 |
290.7 |
304.2 |
| C8 |
N9 |
C1' |
H13 |
157.3 |
142.1 |
| N7 |
C8 |
N9 |
H14 |
180.0 |
180.0 |
| O1B |
PB |
O2B |
N3A |
127.8 |
120.0 |
| O1B |
PB |
O2B |
O3B |
241.7 |
240.0 |
| O2B |
PB |
O1B |
H2 |
0.0 |
180.0 |
| N3A |
PB |
O2B |
O3B |
113.9 |
120.1 |
| O2B |
PB |
N3A |
H5 |
252.0 |
184.0 |
| O2B |
PB |
O3B |
PG |
199.9 |
300.0 |
| N9 |
C8 |
N7 |
H14 |
180.0 |
180.0 |
| C3' |
C4' |
O4' |
H8 |
121.0 |
119.6 |
| O4' |
C4' |
C5' |
H6 |
56.5 |
306.5 |
| O4' |
C4' |
C5' |
H7 |
177.7 |
186.4 |
| H6 |
C5' |
C4' |
H7 |
238.8 |
120.0 |
| O2B |
PB |
O1B |
N3A |
235.3 |
240.0 |
| O2B |
PB |
O1B |
O3B |
119.0 |
120.0 |
| N3A |
PB |
O1B |
O3B |
243.7 |
240.0 |
| O1B |
PB |
N3A |
H5 |
125.6 |
64.0 |
| O1B |
PB |
O3B |
PG |
321.2 |
60.0 |
| O2B |
PB |
N3A |
O3B |
243.9 |
240.0 |
| O1B |
PB |
N3A |
O3B |
117.5 |
120.0 |
| N3A |
PB |
O1B |
H2 |
124.7 |
300.0 |
| N3A |
PB |
O3B |
PG |
83.5 |
180.0 |
| O2B |
PB |
O3B |
N3A |
116.3 |
120.0 |
| O1B |
PB |
O3B |
N3A |
237.7 |
240.0 |
| O3B |
PB |
O1B |
H2 |
241.0 |
60.0 |
| O3B |
PB |
N3A |
H5 |
8.1 |
304.0 |
| N3A |
PA |
O1A |
H1 |
121.1 |
300.0 |
| O3B |
PG |
O1G |
H3 |
242.3 |
60.0 |
| O3B |
PG |
O2G |
H4 |
118.7 |
180.1 |
| O5' |
PA |
O1A |
H1 |
245.9 |
60.0 |
| O2A |
PA |
O1A |
H1 |
360.0 |
180.0 |
| O3G |
PG |
O1G |
H3 |
0.0 |
180.0 |
| O3G |
PG |
O2G |
H4 |
360.0 |
60.1 |
| PB |
O3B |
PG |
O1G |
230.2 |
80.0 |
| O1G |
PG |
O2G |
H4 |
237.0 |
300.1 |
| PB |
O3B |
PG |
O2G |
351.2 |
200.0 |
| O2G |
PG |
O1G |
H3 |
122.1 |
300.0 |
| H1 |
O1A |
PA |
O2A |
360.0 |
180.0 |
| H2 |
O1B |
PB |
N3A |
124.7 |
300.0 |
| H2 |
O1B |
PB |
O3B |
241.0 |
60.0 |
| H3 |
O1G |
PG |
O2G |
122.1 |
300.0 |
| H5 |
N3A |
PB |
O3B |
8.1 |
304.0 |
| C4' |
C5' |
H6 |
H7 |
121.8 |
240.0 |
| C4' |
C5' |
H7 |
H6 |
238.2 |
120.0 |
| H8 |
C4' |
C5' |
H6 |
291.7 |
185.5 |
| H8 |
C4' |
C5' |
H7 |
52.9 |
65.4 |
| H9 |
C3' |
C4' |
H8 |
200.1 |
236.1 |
| H10 |
O3' |
C3' |
H9 |
55.5 |
302.5 |
| O2' |
C2' |
H11 |
C1' |
125.4 |
123.6 |
| H11 |
C2' |
C1' |
N9 |
334.2 |
37.3 |
| H11 |
C2' |
C1' |
H13 |
94.3 |
160.2 |
| H11 |
C2' |
C3' |
H9 |
40.1 |
338.7 |
| H12 |
O2' |
C2' |
C1' |
180.0 |
180.0 |
| H12 |
O2' |
C2' |
H11 |
54.4 |
56.3 |
| C2' |
C1' |
H13 |
N9 |
242.1 |
237.1 |
| H13 |
C1' |
C2' |
H11 |
94.3 |
160.2 |
| H13 |
C1' |
N9 |
C8 |
157.3 |
142.1 |
| C6 |
N6 |
H15 |
H16 |
120.0 |
180.0 |
| C6 |
N6 |
H16 |
H15 |
240.0 |
180.0 |
| H17 |
C2 |
N3 |
C4 |
179.9 |
179.7 |