Atom Nomenclature for ZAM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZAM

Atom Name (V3) Atom Name (V2)
C13 C13
C21 C21
C27 C27
C30 C30
C33 C33
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
N10 N10
N16 N16
C17 C17
O22 O22
C23 C23
N28 N28
O29 O29
C37 C37
C38 C38
C39 C39
C40 C40
N41 N41
C43 C43
C47 C47
C48 C48
C51 C51
C52 C52
H131 1H13
H132 2H13
H301 1H30
H302 2H30
H331 1H33
H332 2H33
H333 3H33
H03 H03
H05 H05
H06 H06
H101 1H10
H102 2H10
H171 1H17
H172 2H17
H173 3H17
H231 1H23
H232 2H23
H233 3H23
H38 H38
H431 1H43
H432 2H43
H433 3H43
H47 H47
H48 H48
H51 H51
H52 H52