PDB Chemical Component Z9Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Z9Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N05 C06 1.378 1.318
N05 C04 1.357 1.291
C07 C06 1.518 1.507
C07 N08 1.470 1.465
C03 C02 1.559 1.530
C02 C04 1.487 1.507
C02 C01 1.557 1.530
C06 C49 1.405 1.337
C04 S50 1.727 1.710
C49 S50 1.737 1.762
N08 C09 1.518 1.465
N08 C10 1.335 1.347
O11 C10 1.235 1.217
C10 N12 1.366 1.348
N12 C13 1.473 1.466
C42 C43 1.388 1.383
C42 C41 1.395 1.382
C35 C36 1.405 1.382
C35 C34 1.380 1.386
C36 N37 1.337 1.318
C43 C44 1.395 1.382
C13 C14 1.518 1.507
C13 C46 1.543 1.529
C41 C40 1.397 1.383
C48 C46 1.542 1.530
C34 C33 1.395 1.386
C14 O15 1.347 1.212
C14 N16 1.336 1.349
N37 C38 1.335 1.319
C44 C45 1.396 1.382
N16 C17 1.461 1.465
C46 C47 1.511 1.530
C40 C45 1.385 1.383
C40 C39 1.518 1.507
C33 C38 1.398 1.382
C33 C32 1.491 1.507
C17 C39 1.536 1.530
C17 C18 1.534 1.530
O31 C32 1.403 1.452
O31 C29 1.418 1.347
C18 C19 1.506 1.530
N28 C29 1.330 1.347
N28 C20 1.446 1.466
C29 O30 1.222 1.215
C20 C19 1.511 1.530
C20 C21 1.510 1.530
C24 C23 1.392 1.382
C24 C25 1.393 1.382
C23 C22 1.393 1.382
C25 C26 1.396 1.383
C22 C21 1.490 1.506
C22 C27 1.385 1.382
C26 C27 1.391 1.382
C32 H1 1.100 1.090
C32 H2 1.100 1.090
C38 H3 1.081 1.079
C36 H4 1.080 1.081
C35 H5 1.080 1.080
C34 H6 1.080 1.081
N28 H7 1.000 0.971
C20 H8 1.100 1.090
C21 H9 1.100 1.091
C21 H10 1.100 1.089
C27 H11 1.080 1.080
C26 H12 1.080 1.080
C25 H13 1.080 1.080
C24 H14 1.081 1.080
C23 H15 1.079 1.081
C19 H16 1.100 1.090
C19 H17 1.100 1.091
C18 H18 1.100 1.091
C18 H19 1.100 1.090
C17 H20 1.100 1.090
C39 H21 1.100 1.090
C39 H22 1.100 1.090
C45 H23 1.080 1.080
C44 H24 1.080 1.080
C43 H25 1.080 1.080
C42 H26 1.080 1.080
C41 H27 1.080 1.080
N16 H28 1.000 0.970
C13 H29 1.100 1.090
C46 H30 1.100 1.090
C48 H31 1.100 1.090
C48 H32 1.100 1.090
C48 H33 1.100 1.090
C47 H34 1.100 1.090
C47 H35 1.100 1.089
C47 H36 1.100 1.090
N12 H37 1.000 0.969
C09 H38 1.100 1.090
C09 H39 1.100 1.090
C09 H40 1.100 1.091
C07 H41 1.100 1.090
C07 H42 1.100 1.090
C49 H43 1.080 1.080
C02 H44 1.100 1.090
C03 H45 1.100 1.091
C03 H46 1.100 1.089
C03 H47 1.100 1.090
C01 H48 1.100 1.090
C01 H49 1.100 1.090
C01 H50 1.100 1.089

Bond Angles for Z9Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N05 C06 C49 114.9 114.5
N05 C04 S50 108.8 110.2
C07 C06 C49 122.6 122.8
C06 C07 H41 110.2 109.5
C06 C07 H42 110.2 109.4
C03 C02 C01 111.8 109.5
C03 C02 H44 108.8 109.4
C01 C02 H44 108.8 109.5
C02 C01 H48 109.5 109.5
C02 C01 H49 109.5 109.4
C02 C01 H50 109.5 109.5
C06 C49 S50 106.7 108.0
C06 C49 H43 126.7 126.0
S50 C49 H43 126.7 126.0
N08 C09 H38 109.5 109.5
N08 C09 H39 109.5 109.5
N08 C09 H40 109.5 109.5
C10 N12 H37 116.3 120.0
N12 C13 H29 106.0 109.5
C42 C43 H25 120.3 120.0
C41 C42 H26 120.5 120.0
C42 C41 H27 119.0 120.0
C35 C36 H4 117.5 119.6
C34 C35 H5 120.3 120.5
C35 C34 H6 122.5 120.8
C43 C44 H24 119.4 120.0
C13 C46 C47 110.2 109.5
C46 C13 H29 105.3 109.5
C13 C46 H30 106.5 109.5
C48 C46 C47 108.6 109.5
C48 C46 H30 106.4 109.4
C14 N16 H28 116.4 120.0
N37 C38 H3 119.2 119.6
C44 C45 H23 120.1 120.0
N16 C17 H20 107.2 109.5
C47 C46 H30 106.8 109.5
C46 C47 H34 109.5 109.4
C46 C47 H35 109.5 109.5
C46 C47 H36 109.5 109.4
C40 C45 H23 120.1 120.0
C40 C39 H21 108.3 109.5
C40 C39 H22 108.3 109.5
C33 C38 H3 119.2 119.7
C33 C32 H1 112.3 109.5
C33 C32 H2 112.3 109.5
C39 C17 H20 106.3 109.5
C17 C39 H21 108.3 109.5
C17 C39 H22 108.3 109.5
C17 C18 H18 108.2 109.4
C17 C18 H19 108.2 109.5
O31 C32 H1 112.3 109.5
O31 C32 H2 112.3 109.4
C18 C19 H16 109.9 109.5
C18 C19 H17 109.9 109.5
N28 C20 C19 107.4 109.4
N28 C20 C21 112.5 109.5
C20 N28 H7 116.9 120.0
N28 C20 H8 111.2 109.5
C21 C20 C19 104.9 109.5
C19 C20 H8 110.3 109.5
C20 C19 H16 110.0 109.5
C20 C19 H17 109.9 109.5
C21 C20 H8 110.3 109.5
C20 C21 H9 110.2 109.4
C20 C21 H10 110.2 109.5
C23 C24 H14 120.3 120.0
C24 C23 H15 120.3 119.9
C24 C25 H13 119.8 120.0
C25 C26 H12 119.8 120.0
C22 C21 H9 110.2 109.5
C22 C21 H10 110.2 109.5
C22 C27 H11 120.6 120.0
C26 C27 H11 120.6 120.0
H1 C32 H2 109.4 109.5
H9 C21 H10 109.5 109.4
H16 C19 H17 109.5 109.5
H18 C18 H19 109.5 109.4
H21 C39 H22 109.4 109.4
H31 C48 H32 109.5 109.4
H31 C48 H33 109.5 109.4
H32 C48 H33 109.5 109.5
H34 C47 H35 109.4 109.5
H34 C47 H36 109.4 109.5
H35 C47 H36 109.5 109.5
H38 C09 H39 109.5 109.5
H38 C09 H40 109.5 109.4
H39 C09 H40 109.5 109.5
H41 C07 H42 109.5 109.5
H45 C03 H46 109.5 109.5
H45 C03 H47 109.4 109.5
H46 C03 H47 109.5 109.5
H48 C01 H49 109.5 109.5
H48 C01 H50 109.4 109.5
H49 C01 H50 109.5 109.5

Torsion Angles for Z9Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C07 C06 N05 C49 181.7 179.8
N05 C06 C07 H41 221.3 155.3
N05 C06 C07 H42 342.1 35.2
N05 C06 C49 S50 0.8 359.8
N05 C06 C49 H43 180.8 179.7
C04 N05 C06 C49 358.4 0.2
N05 C06 C07 C49 178.2 180.3
C07 C06 C49 S50 179.2 180.0
C07 C06 C49 H43 359.2 360.0
H41 C07 C06 H42 239.1 120.0
C07 N08 C09 H38 180.0 270.0
C07 N08 C09 H39 300.0 30.0
C07 N08 C09 H40 60.0 150.0
C01 C02 C03 H44 120.2 120.0
C03 C02 C01 H48 180.0 60.1
C03 C02 C01 H49 300.0 180.0
C03 C02 C01 H50 60.0 300.0
C03 C02 C01 H44 239.8 240.1
H48 C01 C02 H49 240.0 240.0
H48 C01 C02 H50 120.0 120.0
H49 C01 C02 H50 240.0 240.0
C49 C06 C07 H41 43.0 335.0
C49 C06 C07 H42 163.9 215.0
S50 C49 C06 H43 180.0 180.1
C04 S50 C49 H43 180.0 180.2
N05 C04 S50 C49 359.1 0.0
C06 C49 S50 H43 180.0 179.9
H38 C09 N08 H39 240.0 240.0
H38 C09 N08 H40 120.0 120.0
H39 C09 N08 H40 240.0 240.0
N08 C10 N12 H37 53.3 359.9
O11 C10 N12 H37 233.4 180.0
C10 N12 C13 H29 196.3 35.0
C46 C13 N12 H29 243.6 240.0
N12 C13 C46 H30 216.0 185.0
C42 C43 C44 H24 179.9 180.0
C41 C42 C43 H25 180.2 179.7
C34 C35 C36 H4 178.8 179.7
C36 N37 C38 H3 181.3 180.0
C43 C44 C45 H23 180.7 180.0
C13 C14 N16 H28 270.0 360.0
N12 C13 C46 H29 116.9 120.0
C48 C46 C13 C47 234.7 240.0
C48 C46 C13 H30 119.2 120.0
C47 C46 C13 H30 244.5 240.0
C13 C46 C47 H34 180.0 60.0
C13 C46 C47 H35 300.0 180.0
C13 C46 C47 H36 60.0 300.0
C41 C40 C45 H23 178.6 180.3
C41 C40 C39 H21 152.1 149.7
C41 C40 C39 H22 270.7 29.7
C13 C46 C48 C47 126.1 120.0
C48 C46 C13 H29 218.3 185.0
C13 C46 C48 H30 240.8 240.0
C47 C46 C48 H30 114.7 120.0
C48 C46 C47 H34 310.3 180.0
C48 C46 C47 H35 70.3 300.0
C48 C46 C47 H36 190.3 60.0
C34 C33 C38 H3 177.2 180.3
C34 C33 C32 H1 54.6 149.7
C34 C33 C32 H2 178.4 29.7
O15 C14 N16 H28 90.3 180.0
C14 N16 C17 H20 257.0 35.0
C33 C38 N37 H3 180.0 179.9
C40 C45 C44 H23 180.0 180.0
C39 C17 N16 H20 244.2 240.0
N16 C17 C39 H21 236.4 185.0
N16 C17 C39 H22 117.8 305.0
N16 C17 C18 H18 249.8 175.0
N16 C17 C18 H19 8.3 55.0
C47 C46 C13 H29 343.6 305.0
C13 C46 C47 H30 115.3 120.1
C48 C46 C47 H30 245.6 240.1
H34 C47 C46 H35 240.0 240.0
H34 C47 C46 H36 120.0 120.0
H35 C47 C46 H36 240.0 240.0
C44 C45 C40 H23 180.0 180.0
C45 C40 C39 H21 331.0 330.0
C45 C40 C39 H22 89.7 210.0
C40 C39 C17 H20 240.7 305.0
C17 C39 C40 H21 239.3 120.0
C17 C39 C40 H22 120.7 240.0
H21 C39 C40 H22 241.4 120.0
N37 C38 C33 H3 180.0 180.1
C38 C33 C32 H1 232.2 330.0
C38 C33 C32 H2 356.1 210.0
O31 C32 C33 H1 241.9 120.0
O31 C32 C33 H2 118.1 240.1
H1 C32 C33 H2 236.2 120.1
N16 C17 C39 H20 116.4 120.0
C40 C39 C17 H21 120.7 240.0
C40 C39 C17 H22 239.3 120.1
C39 C17 C18 H18 123.0 55.0
C39 C17 C18 H19 241.5 295.0
H21 C39 C17 H22 118.6 240.0
C17 C18 C19 H16 17.6 60.0
C17 C18 C19 H17 138.2 300.0
H18 C18 C17 H19 241.5 120.0
C33 C32 O31 H1 118.1 239.9
C33 C32 O31 H2 241.9 120.0
H1 C32 O31 H2 123.8 240.0
C18 C19 C20 H8 328.0 305.1
C20 C19 C18 H16 240.3 120.0
C20 C19 C18 H17 119.7 240.0
H16 C19 C18 H17 239.4 120.0
C21 C20 N28 C19 245.1 240.0
C19 C20 N28 H8 239.2 240.0
N28 C20 C19 H16 329.7 185.0
N28 C20 C19 H17 209.1 305.0
C21 C20 N28 H8 124.3 120.0
N28 C20 C21 H9 9.2 55.0
N28 C20 C21 H10 130.2 174.9
C18 C19 C20 H16 119.7 240.0
C18 C19 C20 H17 240.3 120.0
N28 C20 C19 C21 240.1 240.0
C19 C20 N28 H7 304.4 25.0
N28 C20 C19 H8 121.4 120.0
C21 C20 C19 H8 241.2 239.9
C19 C20 C21 H9 252.8 295.1
C19 C20 C21 H10 13.8 55.0
H16 C19 C20 H17 120.6 240.0
N28 C20 C21 C19 116.4 120.0
C21 C20 N28 H7 189.5 265.0
N28 C20 C21 H8 235.2 240.0
C19 C20 C21 H8 118.8 120.0
C21 C20 C19 H16 89.5 305.0
C21 C20 C19 H17 329.0 65.0
C22 C21 C20 H9 240.5 240.0
C22 C21 C20 H10 119.5 120.1
H9 C21 C20 H10 239.0 240.1
C23 C24 C25 H13 179.8 179.7
C24 C25 C26 H12 180.3 180.0
C23 C22 C21 H9 254.0 149.8
C23 C22 C21 H10 133.0 29.8
C23 C22 C27 H11 180.2 180.3
C25 C26 C27 H11 179.7 180.0
C22 C21 C20 C19 133.3 175.0
C22 C21 C20 H8 14.5 55.0
C20 C21 C22 H9 119.5 120.0
C20 C21 C22 H10 240.5 240.0
H9 C21 C22 H10 121.0 120.0
C27 C22 C21 H9 74.3 330.0
C27 C22 C21 H10 313.3 210.0
C26 C27 C22 H11 180.0 180.0
C22 C27 C26 H11 180.0 180.0
C33 C32 H1 H2 125.4 239.9
O31 C32 H1 H2 234.6 119.9
C33 C32 H2 H1 234.6 120.1
O31 C32 H2 H1 125.4 240.0
H5 C35 C36 H4 358.7 359.9
H5 C35 C34 H6 359.8 359.8
H6 C34 C35 H5 359.8 359.8
H7 N28 C20 C19 304.4 25.0
H7 N28 C20 C21 189.5 265.0
H7 N28 C20 H8 65.2 145.0
N28 C20 H8 C19 241.0 240.0
N28 C20 H8 C21 125.6 120.0
H8 C20 N28 H7 65.2 145.0
C21 C20 H8 C19 115.4 120.0
H8 C20 C19 H16 208.3 65.1
H8 C20 C19 H17 87.7 185.0
H8 C20 C21 H9 134.0 175.0
H8 C20 C21 H10 255.0 294.9
H9 C21 C20 C19 252.8 295.1
H9 C21 C20 H8 134.0 175.0
C20 C21 H9 H10 121.4 119.9
C22 C21 H9 H10 238.6 239.9
H10 C21 C20 C19 13.8 55.0
H10 C21 C20 H8 255.0 294.9
C20 C21 H10 H9 238.6 240.1
C22 C21 H10 H9 121.4 120.0
H12 C26 C27 H11 359.7 0.0
H13 C25 C26 H12 0.3 360.0
H14 C24 C23 H15 0.2 359.3
H14 C24 C25 H13 359.8 0.4
H15 C23 C24 H14 0.2 359.3
C18 C19 H16 H17 120.9 240.0
H16 C19 C20 H8 208.3 65.1
C20 C19 H16 H17 239.1 120.0
C18 C19 H17 H16 239.1 120.0
H17 C19 C20 H8 87.7 185.0
C20 C19 H17 H16 120.9 240.0
C17 C18 H18 H19 117.7 240.0
H18 C18 C19 H16 256.9 180.0
H18 C18 C19 H17 17.5 60.0
C17 C18 H19 H18 242.3 120.0
H19 C18 C19 H16 138.3 299.9
H19 C18 C19 H17 258.9 180.0
H20 C17 C39 H21 120.0 65.0
H20 C17 C39 H22 1.4 184.9
H20 C17 C18 H18 6.1 295.0
H20 C17 C18 H19 124.6 175.0
C40 C39 H21 H22 117.9 240.0
H21 C39 C17 H20 120.0 65.0
C17 C39 H21 H22 242.1 120.0
C40 C39 H22 H21 242.1 120.0
H22 C39 C17 H20 1.4 184.9
C17 C39 H22 H21 117.9 240.0
H24 C44 C45 H23 0.7 360.0
H25 C43 C44 H24 359.9 360.0
H26 C42 C43 H25 0.1 360.0
H26 C42 C41 H27 359.1 359.7
H27 C41 C42 H26 359.1 359.7
H28 N16 C17 H20 77.0 215.0
H29 C13 C46 C47 343.6 305.0
H29 C13 C46 H30 99.1 65.0
C13 C46 H30 C47 242.2 240.0
H30 C46 C13 H29 99.1 65.0
C48 C46 H30 C47 115.9 120.0
H30 C46 C47 H34 64.7 299.9
H30 C46 C47 H35 184.7 59.9
H30 C46 C47 H36 304.7 180.0
H31 C48 C46 C47 53.9 300.0
H31 C48 C46 H30 299.3 180.0
H32 C48 H31 H33 120.0 119.9
H32 C48 C46 C47 173.9 60.0
H32 C48 C46 H30 59.3 300.0
H31 C48 H32 H33 240.0 240.1
H33 C48 C46 C47 293.9 180.0
H33 C48 C46 H30 179.2 60.0
H31 C48 H33 H32 120.0 119.9
H34 C47 C46 H30 64.7 299.9
C46 C47 H34 H35 120.0 120.0
C46 C47 H34 H36 240.0 240.0
H35 C47 H34 H36 119.9 120.0
H35 C47 C46 H30 184.7 59.9
C46 C47 H35 H34 239.9 240.0
C46 C47 H35 H36 120.0 120.0
H34 C47 H35 H36 240.1 240.0
H36 C47 C46 H30 304.7 180.0
C46 C47 H36 H34 120.0 120.0
C46 C47 H36 H35 240.0 240.0
H34 C47 H36 H35 119.9 120.0
H37 N12 C13 H29 16.3 215.1
N08 C09 H38 H39 120.0 120.0
N08 C09 H38 H40 240.0 240.0
H39 C09 H38 H40 120.0 120.0
N08 C09 H39 H38 240.0 240.0
N08 C09 H39 H40 120.0 120.0
H38 C09 H39 H40 240.0 240.0
N08 C09 H40 H38 120.0 120.0
N08 C09 H40 H39 240.0 240.0
H38 C09 H40 H39 120.0 120.0
H41 C07 C06 C49 43.0 335.0
C06 C07 H41 H42 121.3 240.0
H42 C07 C06 C49 163.9 215.0
C06 C07 H42 H41 238.7 120.0
C06 C49 H43 S50 180.0 180.1
C03 C02 H44 C01 122.1 120.0
H44 C02 C01 H48 300.2 180.0
H44 C02 C01 H49 60.2 300.0
H44 C02 C01 H50 180.2 60.0
H45 C03 C02 C01 60.9 300.0
H45 C03 C02 H44 300.6 180.0
H46 C03 H45 H47 120.0 120.1
H46 C03 C02 C01 180.8 60.0
H46 C03 C02 H44 60.6 300.0
H45 C03 H46 H47 240.0 240.0
H47 C03 C02 C01 300.9 180.0
H47 C03 C02 H44 180.6 60.0
H45 C03 H47 H46 120.0 120.0
H48 C01 C02 H44 300.2 180.0
C02 C01 H48 H49 120.0 119.9
C02 C01 H48 H50 240.0 240.0
H49 C01 H48 H50 120.0 120.0
H49 C01 C02 H44 60.2 300.0
C02 C01 H49 H48 240.0 240.0
C02 C01 H49 H50 120.0 120.0
H48 C01 H49 H50 240.0 240.0
H50 C01 C02 H44 180.2 60.0
C02 C01 H50 H48 120.0 120.0
C02 C01 H50 H49 240.0 240.0
H48 C01 H50 H49 120.0 120.0