Atom Nomenclature for Z9Z

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Z9Z

Atom Name (V3) Atom Name (V2)
O30 O30
C29 C29
O31 O31
C32 C32
C33 C33
C38 C38
N37 N37
C36 C36
C35 C35
C34 C34
N28 N28
C20 C20
C21 C21
C22 C22
C27 C27
C26 C26
C25 C25
C24 C24
C23 C23
C19 C19
C18 C18
C17 C17
C39 C39
C40 C40
C45 C45
C44 C44
C43 C43
C42 C42
C41 C41
N16 N16
C14 C14
O15 O15
C13 C13
C46 C46
C48 C48
C47 C47
N12 N12
C10 C10
O11 O11
N08 N08
C09 C09
C07 C07
C06 C06
N05 N05
C49 C49
S50 S50
C04 C04
C02 C02
C03 C03
C01 C01
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50