PDB Chemical Component Z9D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Z9D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.495	1.531
C1	O1	1.442	1.429
C1	O5	1.488	1.429
C1	H1	1.100	1.090
C2	C3	1.523	1.532
C2	O2	1.416	1.430
C2	H2	1.100	1.090
C3	C4	1.561	1.532
C3	O3	1.405	1.429
C3	H3	1.100	1.090
C4	C5	1.425	1.530
C4	H41	1.100	1.090
C4	H42	1.100	1.090
C5	C6	1.325	1.531
C5	O5	1.530	1.429
C5	H5	1.100	1.091
C6	O6	1.460	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O2	HO2	0.951	0.967
O3	HO3	0.950	0.968
O6	HO6	0.950	0.967
HO1	O1	0.950	0.967

Bond Angles for Z9D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	132.1	109.5
C2	C1	O5	109.1	109.4
C2	C1	H1	103.3	109.5
C1	C2	C3	107.1	109.2
C1	C2	O2	108.5	109.5
C1	C2	H2	109.9	109.5
O1	C1	O5	102.0	109.5
O1	C1	H1	103.8	109.5
O5	C1	H1	103.4	109.5
C1	O5	C5	118.3	114.1
C3	C2	O2	110.6	109.5
C3	C2	H2	109.5	109.5
C2	C3	C4	108.1	109.0
C2	C3	O3	106.9	109.6
C2	C3	H3	110.2	109.5
O2	C2	H2	111.1	109.5
C2	O2	HO2	109.5	114.0
C4	C3	O3	109.8	109.6
C4	C3	H3	109.7	109.5
C3	C4	C5	115.0	109.2
C3	C4	H41	108.1	109.5
C3	C4	H42	108.1	109.5
O3	C3	H3	112.0	109.7
C3	O3	HO3	109.5	114.0
C5	C4	H41	108.1	109.6
C5	C4	H42	108.1	109.6
C4	C5	C6	118.7	109.5
C4	C5	O5	106.4	109.4
C4	C5	H5	106.4	109.5
H41	C4	H42	109.5	109.5
C6	C5	O5	111.6	109.5
C6	C5	H5	107.6	109.5
C5	C6	O6	119.4	109.5
C5	C6	H61	106.9	109.4
C5	C6	H62	106.9	109.4
O5	C5	H5	105.2	109.4
O6	C6	H61	106.9	109.5
O6	C6	H62	106.9	109.5
C6	O6	HO6	109.5	113.9
H61	C6	H62	109.5	109.5

Torsion Angles for Z9D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	127.5	120.0
O1	C1	C2	H1	237.0	240.0
O5	C1	C2	H1	109.5	119.9
C2	C1	O5	C5	304.5	298.9
C3	C2	C1	O2	240.6	240.1
C3	C2	C1	H2	118.9	119.9
C1	C2	C3	C4	298.2	303.1
C1	C2	C3	O3	180.0	183.2
C1	C2	C3	H3	58.0	62.8
O2	C2	C1	H2	238.3	239.9
C1	C2	O2	HO2	180.0	60.0
C2	C1	O1	O5	230.0	240.0
C2	C1	O1	H1	122.8	120.0
O1	C1	C2	C3	186.6	177.6
O1	C1	C2	O2	306.0	297.5
O1	C1	C2	H2	67.6	57.7
O5	C1	O1	H1	252.8	240.0
O1	C1	O5	C5	161.5	178.9
C2	C1	O5	O1	143.0	120.0
C2	C1	O5	H1	250.5	240.1
O5	C1	C2	C3	59.1	57.6
O5	C1	C2	O2	178.5	177.5
O5	C1	C2	H2	300.1	297.6
O1	C1	O5	H1	107.5	120.0
C4	C5	O5	C1	50.0	61.1
C6	C5	O5	C1	180.9	181.2
C1	O5	C5	H5	297.3	301.1
C2	C1	H1	O1	219.8	240.0
C2	C1	H1	O5	113.7	119.9
H1	C1	C2	C3	309.6	297.6
H1	C1	C2	O2	69.0	57.5
H1	C1	C2	H2	190.7	177.7
O1	C1	H1	O5	253.9	239.9
H1	C1	O5	C5	54.0	58.8
C3	C2	C1	O1	186.6	177.6
C3	C2	C1	O5	59.1	57.6
C3	C2	C1	H1	309.6	297.6
C1	C2	C3	O2	118.1	119.9
C1	C2	C3	H2	240.8	240.1
O2	C2	C3	H2	122.7	120.1
C3	C2	O2	HO2	297.2	179.7
C4	C3	C2	O3	118.2	119.9
C4	C3	C2	H3	240.1	240.2
C2	C3	C4	C5	62.1	56.9
C2	C3	C4	H41	182.9	176.9
C2	C3	C4	H42	301.3	297.0
O3	C3	C2	H3	122.0	120.3
C2	C3	O3	HO3	180.0	300.0
O2	C2	C1	O1	306.0	297.5
O2	C2	C1	O5	178.5	177.5
O2	C2	C1	H1	69.0	57.5
C1	C2	O2	C3	242.8	240.3
C1	C2	O2	H2	120.9	120.1
C3	C2	O2	H2	238.2	239.9
O2	C2	C3	C4	180.1	183.1
O2	C2	C3	O3	61.9	63.2
O2	C2	C3	H3	299.9	302.9
H2	C2	C1	O1	67.6	57.7
H2	C2	C1	O5	300.1	297.6
H2	C2	C1	H1	190.7	177.7
C1	C2	H2	C3	117.4	119.8
C1	C2	H2	O2	239.9	239.9
C3	C2	H2	O2	122.4	120.1
H2	C2	C3	C4	57.3	63.0
H2	C2	C3	O3	299.2	303.1
H2	C2	C3	H3	177.2	182.8
H2	C2	O2	HO2	59.1	299.8
C4	C3	C2	O2	180.1	183.1
C4	C3	C2	H2	57.3	63.0
C2	C3	C4	O3	243.7	240.1
C2	C3	C4	H3	120.2	119.8
O3	C3	C4	H3	236.5	239.7
C4	C3	O3	HO3	63.0	180.4
C5	C4	C3	H41	239.2	240.0
C5	C4	C3	H42	120.8	120.0
C3	C4	C5	C6	181.6	182.4
C3	C4	C5	O5	308.4	302.4
C3	C4	C5	H5	60.2	62.4
H41	C4	C3	H42	241.6	239.9
O3	C3	C2	O2	61.9	63.2
O3	C3	C2	H2	299.2	303.1
C2	C3	O3	C4	117.0	119.5
C2	C3	O3	H3	239.2	239.8
C4	C3	O3	H3	122.2	120.2
O3	C3	C4	C5	178.4	176.8
O3	C3	C4	H41	299.2	296.8
O3	C3	C4	H42	57.6	56.9
H3	C3	C2	O2	299.9	302.9
H3	C3	C2	H2	177.2	182.8
C2	C3	H3	C4	241.1	240.5
C2	C3	H3	O3	118.9	120.3
C4	C3	H3	O3	237.8	239.7
H3	C3	C4	C5	301.9	297.2
H3	C3	C4	H41	62.7	57.1
H3	C3	C4	H42	181.2	177.2
H3	C3	O3	HO3	300.8	60.2
C1	O5	C5	C4	50.0	61.1
C5	C4	C3	O3	178.4	176.8
C5	C4	C3	H3	301.9	297.2
C3	C4	C5	H41	120.8	119.9
C3	C4	C5	H42	239.2	240.1
H41	C4	C5	H42	118.4	120.2
C6	C5	C4	O5	233.2	240.0
C6	C5	C4	H5	121.4	120.0
C4	C5	C6	O6	304.3	185.0
C4	C5	C6	H61	65.7	305.0
C4	C5	C6	H62	182.9	65.0
O5	C5	C4	H5	248.2	240.0
H41	C4	C3	O3	299.2	296.8
H41	C4	C3	H3	62.7	57.1
C3	C4	H41	C5	235.0	240.3
C3	C4	H41	H42	117.5	120.0
C5	C4	H41	H42	242.5	239.8
H41	C4	C5	C6	60.8	62.5
H41	C4	C5	O5	187.5	182.5
H41	C4	C5	H5	299.4	302.5
H42	C4	C3	O3	57.6	56.9
H42	C4	C3	H3	181.2	177.2
C3	C4	H42	C5	125.0	119.7
C3	C4	H42	H41	242.5	240.0
C5	C4	H42	H41	117.5	120.2
H42	C4	C5	C6	302.4	302.3
H42	C4	C5	O5	69.1	62.3
H42	C4	C5	H5	181.0	182.3
C1	O5	C5	C6	180.9	181.2
C6	C5	C4	H41	60.8	62.5
C6	C5	C4	H42	302.4	302.3
C4	C5	C6	O5	124.2	120.0
C4	C5	C6	H5	239.2	239.9
O5	C5	C6	H5	115.0	119.9
O6	C6	C5	H61	238.6	240.1
O6	C6	C5	H62	121.4	120.1
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	242.8	240.0
C5	O5	C1	H1	54.0	58.8
O5	C5	C4	H41	187.5	182.5
O5	C5	C4	H42	69.1	62.3
C4	C5	O5	C6	229.1	240.0
C4	C5	O5	H5	112.6	120.0
C6	C5	O5	H5	243.5	240.0
O5	C5	C6	O6	180.1	65.1
O5	C5	C6	H61	301.5	185.0
O5	C5	C6	H62	58.7	305.0
H5	C5	C4	H41	299.4	302.5
H5	C5	C4	H42	181.0	182.3
C4	C5	H5	C6	128.2	120.1
C4	C5	H5	O5	247.4	240.0
C6	C5	H5	O5	119.2	120.0
H5	C5	C6	O6	65.1	305.1
H5	C5	C6	H61	186.4	65.1
H5	C5	C6	H62	303.7	185.1
O6	C6	C5	O5	180.1	65.1
O6	C6	C5	H5	65.1	305.1
C5	C6	O6	H61	121.4	119.9
C5	C6	O6	H62	238.6	240.0
H61	C6	O6	H62	117.2	120.1
H61	C6	C5	O5	301.5	185.0
H61	C6	C5	H5	186.4	65.1
C5	C6	H61	O6	231.0	240.1
C5	C6	H61	H62	115.5	120.0
O6	C6	H61	H62	244.5	239.9
H61	C6	O6	HO6	58.6	60.1
H62	C6	C5	O5	58.7	305.0
H62	C6	C5	H5	303.7	185.1
C5	C6	H62	O6	129.0	120.0
C5	C6	H62	H61	244.5	240.1
O6	C6	H62	H61	115.5	120.1
H62	C6	O6	HO6	301.4	300.0
HO2	O2	C2	H2	59.1	299.8
HO3	O3	C3	H3	300.8	60.2
HO6	O6	C6	H61	58.6	60.1
HO6	O6	C6	H62	301.4	300.0
HO1	O1	C1	H1	57.1	60.0