PDB Chemical Component Z8Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Z8Z

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C07 C06 1.517 1.508
C07 N08 1.464 1.465
C03 C02 1.526 1.531
C06 C48 1.424 1.335
C06 N05 1.386 1.317
C48 S49 1.734 1.762
N05 C04 1.361 1.291
C04 S49 1.748 1.709
C04 C02 1.486 1.507
N08 C09 1.472 1.465
N08 C10 1.345 1.348
C02 C01 1.533 1.530
O11 C10 1.236 1.216
C10 N12 1.342 1.348
N12 C13 1.456 1.465
C41 C42 1.396 1.383
C41 C40 1.393 1.382
C42 C43 1.395 1.383
C40 C39 1.398 1.382
C13 C45 1.537 1.530
C13 C14 1.503 1.507
C47 C45 1.536 1.530
C36 O37 1.390 1.340
C36 N35 1.353 1.302
C46 C45 1.538 1.530
C43 C44 1.395 1.382
C14 N16 1.332 1.348
C14 O15 1.238 1.213
O37 C33 1.366 1.348
N35 C34 1.351 1.346
C39 C44 1.393 1.382
C39 C38 1.514 1.507
N16 C17 1.458 1.465
C38 C17 1.530 1.530
C33 C34 1.388 1.343
C33 C32 1.518 1.507
C17 C18 1.526 1.530
O31 C32 1.439 1.452
O31 C29 1.470 1.346
C18 C19 1.524 1.530
N28 C29 1.350 1.348
N28 C20 1.480 1.466
C29 O30 1.229 1.216
C20 C19 1.536 1.530
C20 C21 1.530 1.530
C23 C24 1.393 1.382
C23 C22 1.397 1.383
C24 C25 1.394 1.383
C21 C22 1.513 1.507
C22 C27 1.397 1.382
C25 C26 1.394 1.382
C27 C26 1.396 1.382
C32 H1 1.099 1.091
C32 H2 1.100 1.090
C36 H3 1.080 1.080
C34 H4 1.080 1.080
N28 H5 1.000 0.970
C20 H6 1.100 1.090
C21 H7 1.100 1.090
C21 H8 1.100 1.090
C27 H9 1.080 1.081
C26 H10 1.080 1.081
C25 H11 1.080 1.080
C24 H12 1.080 1.080
C23 H13 1.081 1.080
C19 H14 1.100 1.090
C19 H15 1.100 1.090
C18 H16 1.100 1.090
C18 H17 1.100 1.090
C17 H18 1.100 1.090
C38 H19 1.100 1.090
C38 H20 1.100 1.090
C44 H21 1.080 1.081
C43 H22 1.080 1.081
C42 H23 1.080 1.079
C41 H24 1.080 1.080
C40 H25 1.080 1.081
N16 H26 1.000 0.970
C13 H27 1.100 1.090
C45 H28 1.100 1.089
C47 H29 1.100 1.090
C47 H30 1.099 1.090
C47 H31 1.100 1.090
C46 H32 1.100 1.090
C46 H33 1.100 1.090
C46 H34 1.100 1.090
N12 H35 1.000 0.969
C09 H36 1.100 1.091
C09 H37 1.100 1.090
C09 H38 1.100 1.089
C07 H39 1.100 1.090
C07 H40 1.100 1.090
C48 H41 1.080 1.080
C02 H42 1.100 1.089
C03 H43 1.100 1.089
C03 H44 1.100 1.090
C03 H45 1.100 1.090
C01 H46 1.100 1.090
C01 H47 1.100 1.090
C01 H48 1.100 1.090

Bond Angles for Z8Z

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C07 C06 C48 122.8 122.7
C07 C06 N05 122.2 122.7
C06 C07 H39 109.1 109.5
C06 C07 H40 109.1 109.5
C03 C02 C01 112.9 109.5
C03 C02 H42 108.2 109.4
N05 C06 C48 115.0 114.5
C06 C48 S49 107.2 107.9
C06 C48 H41 126.4 126.1
C06 N05 C04 114.2 117.1
S49 C48 H41 126.4 126.0
N05 C04 S49 109.7 110.2
N05 C04 C02 133.3 124.9
C04 C02 C01 112.7 109.5
C04 C02 H42 108.7 109.5
N08 C09 H36 109.5 109.5
N08 C09 H37 109.5 109.5
N08 C09 H38 109.4 109.5
C01 C02 H42 108.2 109.5
C02 C01 H46 109.5 109.5
C02 C01 H47 109.4 109.5
C02 C01 H48 109.5 109.5
C10 N12 H35 119.8 120.0
N12 C13 H27 105.7 109.5
C41 C42 H23 119.9 120.1
C40 C41 H24 120.2 120.0
C41 C40 H25 119.9 120.0
C42 C43 H22 119.9 120.0
C45 C13 H27 104.9 109.5
C13 C45 H28 106.9 109.5
C47 C45 H28 106.9 109.5
C36 N35 C34 105.3 108.7
N35 C36 H3 124.6 125.6
C46 C45 H28 106.9 109.5
C43 C44 H21 120.2 120.0
C14 N16 H26 115.5 120.0
O37 C33 C34 106.3 107.2
C33 C34 N35 111.1 107.6
N35 C34 H4 124.5 126.2
C39 C44 H21 120.2 120.0
C39 C38 H19 110.1 109.5
C39 C38 H20 110.1 109.5
N16 C17 H18 107.3 109.5
C38 C17 H18 106.4 109.5
C33 C34 H4 124.4 126.2
C33 C32 H1 108.7 109.4
C33 C32 H2 108.7 109.5
C17 C18 H16 109.9 109.5
C17 C18 H17 109.8 109.5
O31 C32 H1 108.7 109.5
O31 C32 H2 108.7 109.5
C18 C19 H14 108.3 109.4
C18 C19 H15 108.3 109.5
N28 C20 C19 114.1 109.4
N28 C20 C21 113.3 109.4
C20 N28 H5 115.6 120.0
N28 C20 H6 108.0 109.5
C21 C20 C19 106.1 109.5
C19 C20 H6 107.4 109.5
C20 C19 H14 108.3 109.5
C20 C19 H15 108.3 109.5
C20 C21 C22 114.4 109.5
C21 C20 H6 107.4 109.5
C20 C21 H7 108.2 109.5
C20 C21 H8 108.2 109.4
C23 C24 H12 120.1 120.0
C24 C25 H11 119.7 120.0
C21 C22 C27 118.4 120.0
C22 C21 H7 108.2 109.5
C22 C21 H8 108.2 109.5
C22 C27 C26 120.2 120.0
C22 C27 H9 119.9 119.9
C25 C26 H10 120.2 120.0
C26 C27 H9 119.9 120.0
C27 C26 H10 120.2 120.0
H1 C32 H2 109.5 109.5
H7 C21 H8 109.5 109.5
H14 C19 H15 109.5 109.4
H16 C18 H17 109.4 109.4
H19 C38 H20 109.5 109.4
H29 C47 H30 109.5 109.4
H29 C47 H31 109.4 109.5
H30 C47 H31 109.4 109.5
H32 C46 H33 109.5 109.5
H32 C46 H34 109.5 109.5
H33 C46 H34 109.5 109.4
H36 C09 H37 109.5 109.4
H36 C09 H38 109.5 109.5
H37 C09 H38 109.5 109.5
H39 C07 H40 109.5 109.5
H43 C03 H44 109.5 109.5
H43 C03 H45 109.4 109.5
H44 C03 H45 109.5 109.5
H46 C01 H47 109.5 109.5
H46 C01 H48 109.5 109.5
H47 C01 H48 109.5 109.4

Torsion Angles for Z8Z

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N05 C06 C07 C48 180.1 180.2
C07 C06 C48 S49 179.9 180.0
C07 C06 C48 H41 359.9 360.0
C07 C06 N05 C04 180.6 180.0
H39 C07 C06 H40 240.5 120.0
C07 N08 C09 H36 180.0 270.0
C07 N08 C09 H37 300.0 29.9
C07 N08 C09 H38 60.0 150.0
C04 C02 C03 C01 123.8 120.0
C04 C02 C03 H42 243.5 240.0
C01 C02 C03 H42 119.7 120.0
C03 C02 C01 H46 180.0 180.0
C03 C02 C01 H47 300.0 300.0
C03 C02 C01 H48 60.0 60.0
C07 C06 C48 N05 180.1 180.2
C48 C06 C07 H39 33.6 335.0
C48 C06 C07 H40 153.2 215.0
C48 C06 N05 C04 0.7 0.2
S49 C48 C06 H41 180.0 180.0
C07 C06 N05 C48 179.9 179.8
N05 C06 C07 H39 213.7 155.2
N05 C06 C07 H40 333.3 35.2
N05 C06 C48 S49 359.8 359.8
N05 C06 C48 H41 179.8 179.8
C06 N05 C04 S49 359.1 359.9
C06 N05 C04 C02 181.1 180.0
C06 C48 S49 H41 180.0 180.0
N05 C04 S49 C48 0.6 360.0
C04 N05 C06 C48 0.7 0.2
N05 C04 C02 C01 233.6 240.0
N05 C04 C02 H42 353.5 0.1
C04 S49 C48 H41 179.7 180.2
N05 C04 S49 C02 181.6 180.0
C03 C02 C04 C01 236.1 240.0
C03 C02 C04 H42 116.2 119.9
N05 C04 C02 S49 177.9 180.0
C01 C02 C04 H42 240.1 239.9
C04 C02 C01 H46 59.9 60.0
C04 C02 C01 H47 180.0 180.1
C04 C02 C01 H48 299.9 300.0
H36 C09 N08 H37 240.0 240.1
H36 C09 N08 H38 120.0 120.1
H37 C09 N08 H38 240.0 240.0
N08 C10 N12 H35 97.0 0.0
C03 C02 C01 H42 240.3 240.0
C04 C02 C01 H42 120.3 120.1
H46 C01 C02 H47 240.0 240.0
H46 C01 C02 H48 120.0 120.0
H47 C01 C02 H48 240.0 240.0
O11 C10 N12 H35 276.8 180.1
C10 N12 C13 H27 22.0 325.0
C45 C13 N12 H27 115.0 120.0
N12 C13 C45 H28 158.7 305.3
C41 C42 C43 H22 180.1 180.1
C40 C41 C42 H23 179.9 179.7
C42 C43 C44 H21 180.0 180.1
C40 C39 C44 H21 179.9 180.2
C40 C39 C38 H19 199.9 149.7
C40 C39 C38 H20 320.6 29.8
N12 C13 C45 H27 244.6 240.0
C47 C45 C13 H28 116.1 120.0
C46 C45 C13 H28 242.8 240.0
C13 C14 N16 H26 311.2 355.7
C47 C45 C13 H27 30.2 185.3
C13 C45 C47 H28 243.9 239.9
C46 C45 C47 H28 116.7 120.0
C36 O37 C33 C34 359.5 360.0
C33 C34 N35 C36 0.2 0.1
C36 N35 C34 H4 180.2 180.2
C46 C45 C13 H27 156.9 305.3
C13 C45 C46 H28 117.2 120.0
C47 C45 C46 H28 243.3 240.0
C39 C44 C43 H21 180.0 179.9
C14 N16 C17 H18 94.3 325.0
O15 C14 N16 H26 129.2 175.7
O37 C33 C34 N35 0.2 360.0
O37 C33 C34 H4 180.2 179.8
O37 C33 C32 H1 60.9 150.3
O37 C33 C32 H2 180.0 30.3
C34 N35 C36 H3 179.5 180.0
C33 C34 N35 H4 180.0 179.8
C43 C44 C39 H21 180.0 180.1
C44 C39 C38 H19 20.7 330.0
C44 C39 C38 H20 141.4 210.0
C39 C38 C17 H18 54.1 55.0
H19 C38 C39 H20 239.3 120.0
C38 C17 N16 H18 115.0 120.0
N16 C17 C18 H16 258.4 305.0
N16 C17 C18 H17 18.8 185.1
N16 C17 C38 H18 244.5 240.0
C38 C17 C18 H16 23.8 65.0
C38 C17 C18 H17 144.2 305.1
C36 N35 C34 C33 0.2 0.1
N35 C34 C33 H4 180.0 180.2
C34 C33 C32 H1 241.4 330.0
C34 C33 C32 H2 0.4 210.0
O31 C32 C33 H1 239.5 120.0
O31 C32 C33 H2 120.5 240.0
H1 C32 C33 H2 241.0 120.0
C17 C18 C19 H14 55.4 60.0
C17 C18 C19 H15 174.1 300.1
H16 C18 C17 H17 239.6 119.9
C33 C32 O31 H1 120.5 240.0
C33 C32 O31 H2 239.5 120.0
H1 C32 O31 H2 119.1 240.0
C18 C19 C20 H6 321.6 305.1
C20 C19 C18 H14 239.3 120.0
C20 C19 C18 H15 120.7 239.9
H14 C19 C18 H15 241.3 119.9
C21 C20 N28 C19 238.3 240.0
C19 C20 N28 H6 240.6 240.0
N28 C20 C19 H14 320.7 185.0
N28 C20 C19 H15 202.1 305.0
N28 C20 C21 C22 300.7 295.0
C21 C20 N28 H6 118.9 120.0
N28 C20 C21 H7 61.4 55.0
N28 C20 C21 H8 180.0 175.0
C18 C19 C20 H14 120.7 240.0
C18 C19 C20 H15 239.3 120.1
N28 C20 C19 C21 234.4 240.1
C19 C20 N28 H5 238.6 24.9
N28 C20 C19 H6 119.7 120.0
C19 C20 C21 C22 174.7 175.0
C21 C20 C19 H6 245.3 239.9
C19 C20 C21 H7 295.4 295.0
C19 C20 C21 H8 53.9 55.0
H14 C19 C20 H15 118.6 240.0
N28 C20 C21 C19 126.1 119.9
C21 C20 N28 H5 116.9 265.0
N28 C20 C21 H6 240.7 240.0
C19 C20 C21 H6 114.6 120.1
C21 C20 C19 H14 86.3 305.0
C21 C20 C19 H15 327.7 64.9
C20 C21 C22 C27 188.5 90.0
C22 C21 C20 H7 239.3 240.0
C22 C21 C20 H8 120.7 120.0
H7 C21 C20 H8 241.4 240.0
C23 C24 C25 H11 179.7 179.7
C23 C22 C21 H7 248.2 149.7
C23 C22 C21 H8 129.7 29.7
C23 C22 C27 H9 179.8 180.3
C24 C25 C26 H10 180.0 180.0
C22 C21 C20 C19 174.7 175.0
C22 C21 C20 H6 60.0 55.0
C20 C21 C22 H7 120.7 120.0
C20 C21 C22 H8 239.3 240.0
C21 C22 C27 C26 180.3 180.0
C21 C22 C27 H9 0.3 360.0
H7 C21 C22 H8 118.5 120.0
C27 C22 C21 H7 67.7 330.0
C27 C22 C21 H8 309.2 210.0
C26 C27 C22 H9 180.0 180.1
C22 C27 C26 H10 180.2 180.0
C25 C26 C27 H9 180.2 180.0
C27 C26 C25 H10 180.0 180.1
C22 C27 C26 H9 180.0 179.9
C25 C26 C27 H10 180.0 179.9
C33 C32 H1 H2 118.5 240.0
O31 C32 H1 H2 241.4 120.0
C33 C32 H2 H1 241.5 120.0
O31 C32 H2 H1 118.6 240.0
H3 C36 N35 C34 179.5 180.0
C33 C34 H4 N35 180.0 180.2
H5 N28 C20 C19 238.6 24.9
H5 N28 C20 C21 116.9 265.0
H5 N28 C20 H6 358.0 145.0
N28 C20 H6 C19 236.4 240.0
N28 C20 H6 C21 122.6 120.0
H6 C20 N28 H5 358.0 145.0
C21 C20 H6 C19 113.8 120.0
H6 C20 C19 H14 201.0 65.0
H6 C20 C19 H15 82.3 185.0
H6 C20 C21 C22 60.0 55.0
H6 C20 C21 H7 180.7 175.0
H6 C20 C21 H8 299.3 295.0
H7 C21 C20 C19 295.4 295.0
C20 C21 H7 C22 235.5 240.0
H7 C21 C20 H6 180.7 175.0
C20 C21 H7 H8 117.8 120.0
H7 C21 C22 C27 67.7 330.0
C22 C21 H7 H8 242.3 240.0
H8 C21 C20 C19 53.9 55.0
C20 C21 H8 C22 124.5 120.0
H8 C21 C20 H6 299.3 295.0
C20 C21 H8 H7 242.2 240.0
H8 C21 C22 C27 309.2 210.0
C22 C21 H8 H7 117.7 120.0
C22 C27 H9 C26 180.0 180.1
H9 C27 C26 H10 0.2 0.1
H10 C26 C27 H9 0.2 0.1
H11 C25 C26 H10 0.0 359.9
H12 C24 C25 H11 359.7 0.1
H13 C23 C24 H12 0.3 359.7
C18 C19 H14 H15 117.9 240.1
H14 C19 C20 H6 201.0 65.0
C20 C19 H14 H15 242.1 120.0
C18 C19 H15 H14 242.1 119.9
H15 C19 C20 H6 82.3 185.0
C20 C19 H15 H14 117.9 240.0
C17 C18 H16 H17 120.7 240.0
H16 C18 C19 H14 295.6 180.0
H16 C18 C19 H15 54.3 60.1
C17 C18 H17 H16 239.3 120.0
H17 C18 C19 H14 175.2 299.9
H17 C18 C19 H15 293.9 180.0
H18 C17 C18 H16 139.6 185.0
H18 C17 C18 H17 260.0 65.0
C39 C38 H19 H20 121.1 240.0
H19 C38 C17 H18 294.5 175.0
C39 C38 H20 H19 238.9 120.0
H20 C38 C17 H18 173.8 295.0
H22 C43 C44 H21 0.0 0.0
H23 C42 C43 H22 0.1 0.1
H24 C41 C42 H23 359.9 360.0
H24 C41 C40 H25 360.0 359.7
H25 C40 C41 H24 360.0 359.7
H26 N16 C17 H18 274.3 145.0
H27 C13 C45 H28 274.1 65.3
H28 C45 C13 H27 274.1 65.3
H29 C47 C45 H28 296.1 180.1
H30 C47 H29 H31 120.0 120.0
H30 C47 C45 H28 56.1 300.0
H29 C47 H30 H31 240.1 240.0
H31 C47 C45 H28 176.1 60.0
H29 C47 H31 H30 120.0 120.0
H32 C46 C45 H28 62.8 293.8
H33 C46 H32 H34 120.0 119.9
H33 C46 C45 H28 182.8 53.9
H32 C46 H33 H34 240.0 240.0
H34 C46 C45 H28 302.8 173.8
H32 C46 H34 H33 120.0 120.0
H35 N12 C13 H27 202.0 145.0
N08 C09 H36 H37 120.0 119.9
N08 C09 H36 H38 240.0 239.9
H37 C09 H36 H38 120.0 120.0
N08 C09 H37 H36 240.0 240.1
N08 C09 H37 H38 120.0 120.0
H36 C09 H37 H38 240.0 240.0
N08 C09 H38 H36 120.0 120.0
N08 C09 H38 H37 240.0 240.0
H36 C09 H38 H37 120.0 120.0
H39 C07 C06 C48 33.6 335.0
H39 C07 C06 N05 213.7 155.2
C06 C07 H39 H40 119.3 240.0
H40 C07 C06 C48 153.2 215.0
H40 C07 C06 N05 333.3 35.2
C06 C07 H40 H39 240.7 120.0
C06 C48 H41 S49 180.0 180.0
C03 C02 H42 C01 122.6 120.0
C04 C02 H42 C01 237.3 239.9
H42 C02 C01 H46 299.7 300.0
H42 C02 C01 H47 59.7 60.0
H42 C02 C01 H48 179.7 180.0
H43 C03 C02 C01 56.2 180.0
H43 C03 C02 H42 296.5 60.0
H44 C03 H43 H45 120.0 120.0
H44 C03 C02 C01 176.2 300.0
H44 C03 C02 H42 56.5 180.0
H43 C03 H44 H45 240.1 240.0
H45 C03 C02 C01 296.2 60.0
H45 C03 C02 H42 176.5 299.9
H43 C03 H45 H44 120.0 120.0
H46 C01 C02 H42 299.7 300.0
C02 C01 H46 H47 120.0 120.0
C02 C01 H46 H48 240.0 240.0
H47 C01 H46 H48 120.0 120.0
H47 C01 C02 H42 59.7 60.0
C02 C01 H47 H46 240.0 240.0
C02 C01 H47 H48 120.0 120.0
H46 C01 H47 H48 240.0 240.0
H48 C01 C02 H42 179.7 180.0
C02 C01 H48 H46 120.1 120.0
C02 C01 H48 H47 240.0 240.0
H46 C01 H48 H47 120.0 120.0