PDB Chemical Component Z80
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z80
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C17 |
1.540 |
1.391 |
| N1 |
C1 |
1.431 |
1.393 |
| N1 |
C4 |
1.434 |
1.394 |
| C2 |
C1 |
1.397 |
1.391 |
| C2 |
S1 |
1.686 |
1.761 |
| N2 |
C14 |
1.460 |
1.469 |
| C3 |
S1 |
1.688 |
1.762 |
| C3 |
C8 |
1.392 |
1.388 |
| C4 |
C3 |
1.398 |
1.391 |
| C5 |
C6 |
1.390 |
1.383 |
| C5 |
H1 |
1.080 |
1.080 |
| C5 |
C17 |
1.317 |
1.381 |
| C6 |
C7 |
1.390 |
1.383 |
| C6 |
H2 |
1.080 |
1.080 |
| C7 |
C2 |
1.396 |
1.388 |
| C8 |
H3 |
1.080 |
1.080 |
| C9 |
C8 |
1.387 |
1.383 |
| C9 |
H4 |
1.080 |
1.080 |
| C10 |
C9 |
1.387 |
1.384 |
| C11 |
C4 |
1.406 |
1.391 |
| C11 |
C10 |
1.400 |
1.383 |
| C11 |
H5 |
1.080 |
1.079 |
| C12 |
N1 |
1.474 |
1.465 |
| C12 |
H6 |
1.100 |
1.090 |
| C12 |
H7 |
1.100 |
1.090 |
| C13 |
C12 |
1.534 |
1.530 |
| C13 |
H8 |
1.100 |
1.089 |
| C13 |
H9 |
1.100 |
1.090 |
| C14 |
C13 |
1.529 |
1.530 |
| C14 |
H10 |
1.101 |
1.090 |
| C14 |
H11 |
1.100 |
1.089 |
| C15 |
N2 |
1.456 |
1.469 |
| C15 |
H12 |
1.100 |
1.090 |
| C15 |
H13 |
1.100 |
1.090 |
| C15 |
H14 |
1.100 |
1.090 |
| C16 |
N2 |
1.458 |
1.469 |
| C16 |
H15 |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.089 |
| C16 |
H17 |
1.100 |
1.090 |
| CL1 |
C10 |
1.797 |
1.736 |
| C7 |
H18 |
1.080 |
1.080 |
| C17 |
H20 |
1.080 |
1.080 |
Bond Angles for Z80
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
C17 |
119.7 |
118.8 |
| C2 |
C1 |
C17 |
117.2 |
119.4 |
| C1 |
C17 |
C5 |
116.9 |
120.3 |
| C1 |
C17 |
H20 |
121.5 |
119.8 |
| N1 |
C4 |
C3 |
121.9 |
121.8 |
| N2 |
C14 |
C13 |
109.0 |
109.5 |
| N2 |
C14 |
H10 |
109.6 |
109.5 |
| N2 |
C14 |
H11 |
109.6 |
109.4 |
| C4 |
C3 |
C8 |
121.1 |
120.0 |
| C3 |
C8 |
H3 |
119.4 |
119.9 |
| C6 |
C5 |
H1 |
117.5 |
119.9 |
| C6 |
C5 |
C17 |
125.0 |
120.2 |
| C5 |
C6 |
C7 |
119.2 |
119.9 |
| C5 |
C6 |
H2 |
120.4 |
120.0 |
| H1 |
C5 |
C17 |
117.5 |
119.9 |
| C5 |
C17 |
H20 |
121.5 |
119.9 |
| C7 |
C6 |
H2 |
120.4 |
120.1 |
| C6 |
C7 |
H18 |
119.7 |
119.8 |
| C9 |
C8 |
H3 |
119.4 |
119.8 |
| C10 |
C9 |
H4 |
120.6 |
120.1 |
| H6 |
C12 |
H7 |
110.7 |
109.5 |
| C13 |
C12 |
H6 |
108.2 |
109.4 |
| C13 |
C12 |
H7 |
108.2 |
109.5 |
| H8 |
C13 |
H9 |
110.5 |
109.5 |
| C14 |
C13 |
H8 |
108.4 |
109.5 |
| C14 |
C13 |
H9 |
108.4 |
109.5 |
| H10 |
C14 |
H11 |
109.3 |
109.4 |
| H12 |
C15 |
H13 |
109.5 |
109.5 |
| H12 |
C15 |
H14 |
109.5 |
109.4 |
| H13 |
C15 |
H14 |
109.5 |
109.5 |
| H15 |
C16 |
H16 |
109.4 |
109.5 |
| H15 |
C16 |
H17 |
109.4 |
109.4 |
| H16 |
C16 |
H17 |
109.5 |
109.5 |
Torsion Angles for Z80
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
C17 |
C1 |
359.2 |
359.8 |
| H1 |
C5 |
C17 |
C1 |
179.2 |
179.9 |
| C5 |
C17 |
C1 |
H20 |
180.0 |
179.9 |
| C2 |
C1 |
N1 |
C17 |
180.0 |
179.7 |
| N1 |
C1 |
C17 |
C5 |
180.7 |
179.7 |
| N1 |
C1 |
C17 |
H20 |
0.8 |
359.7 |
| C4 |
N1 |
C1 |
C17 |
180.8 |
155.6 |
| N1 |
C4 |
C3 |
C8 |
180.4 |
179.8 |
| N1 |
C1 |
C2 |
C17 |
180.0 |
180.3 |
| C2 |
C1 |
C17 |
C5 |
0.7 |
359.9 |
| C2 |
C1 |
C17 |
H20 |
180.8 |
180.0 |
| S1 |
C2 |
C1 |
C17 |
179.7 |
180.2 |
| N2 |
C14 |
C13 |
H8 |
110.7 |
60.0 |
| N2 |
C14 |
C13 |
H9 |
350.7 |
300.0 |
| H10 |
C14 |
N2 |
H11 |
240.0 |
240.1 |
| N1 |
C4 |
C3 |
S1 |
0.2 |
359.9 |
| C9 |
C8 |
C3 |
H3 |
180.0 |
180.0 |
| C4 |
C3 |
C8 |
H3 |
179.9 |
180.2 |
| C1 |
C17 |
C5 |
C6 |
359.2 |
359.8 |
| H1 |
C5 |
C6 |
C17 |
180.0 |
179.9 |
| C6 |
C5 |
C17 |
H20 |
179.2 |
179.8 |
| C7 |
C6 |
C5 |
H2 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H18 |
179.9 |
180.0 |
| C1 |
C17 |
C5 |
H1 |
179.2 |
179.9 |
| C6 |
C5 |
H1 |
C17 |
180.0 |
180.1 |
| H1 |
C5 |
C6 |
C7 |
180.5 |
180.1 |
| H1 |
C5 |
C6 |
H2 |
0.4 |
0.1 |
| H1 |
C5 |
C17 |
H20 |
359.2 |
359.9 |
| C1 |
C17 |
C5 |
H20 |
180.0 |
180.1 |
| C6 |
C5 |
C17 |
H1 |
180.0 |
179.9 |
| C17 |
C5 |
C6 |
C7 |
0.5 |
0.2 |
| C17 |
C5 |
C6 |
H2 |
180.5 |
180.2 |
| C7 |
C6 |
C5 |
H1 |
180.5 |
180.1 |
| C7 |
C6 |
C5 |
C17 |
0.5 |
0.2 |
| C5 |
C6 |
C7 |
H2 |
180.0 |
180.0 |
| H2 |
C6 |
C5 |
H1 |
0.4 |
0.1 |
| H2 |
C6 |
C5 |
C17 |
180.5 |
180.2 |
| C5 |
C6 |
H2 |
C7 |
180.0 |
180.0 |
| H2 |
C6 |
C7 |
H18 |
360.0 |
0.0 |
| C7 |
C2 |
C1 |
C17 |
359.6 |
0.2 |
| C3 |
C8 |
C9 |
H3 |
180.0 |
180.0 |
| H4 |
C9 |
C8 |
H3 |
0.1 |
359.9 |
| C10 |
C9 |
C8 |
H3 |
180.1 |
179.8 |
| C11 |
C10 |
C9 |
H4 |
179.9 |
180.0 |
| C12 |
N1 |
C1 |
C17 |
360.0 |
335.7 |
| C13 |
C12 |
H6 |
H7 |
241.6 |
240.0 |
| C13 |
C12 |
H7 |
H6 |
118.4 |
120.0 |
| N2 |
C14 |
C13 |
C12 |
230.7 |
180.0 |
| H6 |
C12 |
C13 |
H7 |
120.0 |
120.0 |
| H8 |
C13 |
C12 |
H6 |
284.6 |
180.0 |
| H8 |
C13 |
C12 |
H7 |
164.6 |
60.0 |
| C14 |
C13 |
H8 |
H9 |
241.4 |
239.9 |
| H9 |
C13 |
C12 |
H6 |
44.5 |
300.0 |
| H9 |
C13 |
C12 |
H7 |
284.5 |
180.0 |
| C14 |
C13 |
H9 |
H8 |
118.6 |
120.1 |
| N2 |
C14 |
C13 |
H10 |
120.0 |
120.0 |
| N2 |
C14 |
C13 |
H11 |
240.0 |
240.0 |
| C14 |
C13 |
C12 |
H6 |
164.5 |
60.0 |
| C14 |
C13 |
C12 |
H7 |
44.5 |
300.0 |
| H8 |
C13 |
C14 |
H9 |
120.0 |
120.0 |
| N2 |
C14 |
H10 |
C13 |
240.4 |
240.0 |
| N2 |
C14 |
H10 |
H11 |
120.2 |
119.9 |
| H10 |
C14 |
C13 |
H8 |
350.7 |
300.0 |
| H10 |
C14 |
C13 |
H9 |
230.7 |
180.0 |
| N2 |
C14 |
H11 |
C13 |
119.6 |
120.0 |
| N2 |
C14 |
H11 |
H10 |
239.8 |
240.0 |
| H11 |
C14 |
C13 |
H8 |
230.7 |
180.0 |
| H11 |
C14 |
C13 |
H9 |
110.7 |
60.0 |
| C15 |
N2 |
C14 |
H10 |
19.6 |
186.1 |
| C15 |
N2 |
C14 |
H11 |
139.6 |
306.0 |
| H13 |
C15 |
H12 |
H14 |
120.0 |
120.0 |
| H12 |
C15 |
H13 |
H14 |
240.0 |
240.0 |
| H12 |
C15 |
H14 |
H13 |
120.0 |
120.0 |
| C16 |
N2 |
C14 |
H10 |
201.4 |
310.0 |
| C16 |
N2 |
C14 |
H11 |
321.3 |
70.0 |
| H16 |
C16 |
H15 |
H17 |
120.0 |
120.0 |
| H15 |
C16 |
H16 |
H17 |
240.1 |
240.0 |
| H15 |
C16 |
H17 |
H16 |
119.9 |
120.0 |
| CL1 |
C10 |
C9 |
H4 |
359.9 |
359.8 |
| H18 |
C7 |
C6 |
H2 |
360.0 |
0.0 |
| C1 |
C17 |
H20 |
C5 |
180.0 |
179.9 |