Atom Nomenclature for Z76

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Z76

Atom Name (V3) Atom Name (V2)
C1 C1
F1 F1
N1 N1
O1 O1
S1 S1
C2 C2
F2 F2
N2 N2
O2 O2
C3 C3
N3 N3
O3 O3
C4 C4
N4 N4
C5 C5
O5 O5
C6 C6
O6 O6
C7 C7
O7 O7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C27 C27
C28 C28
C29 C29
C32 C32
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
H1 H1
HN2 HN2
H3 H3
HN3 HN3
HO3 HO3
H5 H5
H8 H8
H9 H9
H9A H9A
H10 H10
H10A H10A
H11 H11
H11A H11A
H12 H12
H12A H12A
H14 H14
H14A H14A
H14B H14B
H16 H16
H17 H17
H18 H18
H18A H18A
H20 H20
H22 H22
H24 H24
H25 H25
H25A H25A
H27 H27
H27A H27A
H28 H28
H28A H28A
H29 H29
H32 H32
H32A H32A
H32B H32B
H34 H34
H34A H34A
H34B H34B
H35 H35
H36 H36
H37 H37
H39 H39