Atom Nomenclature for Z71

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Z71

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
N3 N3
C4 C4
S5 S5
C6 C6
N7 N7
N8 N8
O9 O9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
S16 S16
O17 O17
N18 N18
O19 O19
N20 N20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
F27 F27
F28 F28
HN7 HN7
HN7A HN7A
HN8 HN8
H11 H11
H12 H12
H14 H14
H15 H15
HN18 HN18
HN1A HN1A
HN20 HN20
H21 H21
H23 H23
H25 H25