PDB Chemical Component Z62
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z62
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.343 |
1.312 |
| N1 |
C14 |
1.356 |
1.302 |
| C2 |
N3 |
1.362 |
1.385 |
| C2 |
C4 |
1.420 |
1.384 |
| N3 |
HN3 |
1.000 |
0.970 |
| N3 |
HN3A |
1.000 |
0.971 |
| C4 |
C5 |
1.381 |
1.407 |
| C4 |
S13 |
1.720 |
1.761 |
| C5 |
C6 |
1.498 |
1.480 |
| C5 |
O12 |
1.345 |
1.219 |
| C6 |
C7 |
1.438 |
1.395 |
| C6 |
C11 |
1.431 |
1.395 |
| C7 |
C8 |
1.437 |
1.379 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
C9 |
1.447 |
1.383 |
| C8 |
N19 |
1.346 |
1.480 |
| C9 |
C10 |
1.419 |
1.384 |
| C9 |
H9 |
1.080 |
1.080 |
| C10 |
C11 |
1.421 |
1.379 |
| C10 |
H10 |
1.080 |
1.080 |
| C11 |
H11 |
1.080 |
1.080 |
| S13 |
C14 |
1.718 |
1.709 |
| C14 |
N15 |
1.380 |
1.377 |
| N15 |
C16 |
1.468 |
1.464 |
| N15 |
HN15 |
1.000 |
0.971 |
| C16 |
C17 |
1.512 |
1.507 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.091 |
| C17 |
C18 |
1.485 |
1.310 |
| C17 |
H17 |
1.080 |
1.079 |
| C18 |
H18 |
1.080 |
1.080 |
| C18 |
H18A |
1.080 |
1.080 |
| N19 |
O20 |
1.336 |
1.218 |
| N19 |
O21 |
1.211 |
1.218 |
Bond Angles for Z62
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
111.4 |
117.3 |
| N1 |
C2 |
N3 |
120.4 |
123.2 |
| N1 |
C2 |
C4 |
113.8 |
113.6 |
| N1 |
C14 |
S13 |
115.0 |
110.9 |
| N1 |
C14 |
N15 |
121.4 |
124.5 |
| N3 |
C2 |
C4 |
125.8 |
123.2 |
| C2 |
N3 |
HN3 |
109.5 |
120.0 |
| C2 |
N3 |
HN3A |
109.4 |
120.0 |
| C2 |
C4 |
C5 |
127.1 |
126.2 |
| C2 |
C4 |
S13 |
110.7 |
107.7 |
| HN3 |
N3 |
HN3A |
109.5 |
120.0 |
| C5 |
C4 |
S13 |
122.1 |
126.2 |
| C4 |
C5 |
C6 |
124.8 |
120.0 |
| C4 |
C5 |
O12 |
120.3 |
120.0 |
| C4 |
S13 |
C14 |
89.1 |
90.6 |
| C6 |
C5 |
O12 |
114.9 |
120.0 |
| C5 |
C6 |
C7 |
121.7 |
120.2 |
| C5 |
C6 |
C11 |
119.3 |
120.1 |
| C7 |
C6 |
C11 |
119.1 |
119.7 |
| C6 |
C7 |
C8 |
121.8 |
119.9 |
| C6 |
C7 |
H7 |
119.1 |
120.1 |
| C6 |
C11 |
C10 |
120.2 |
119.8 |
| C6 |
C11 |
H11 |
119.9 |
120.1 |
| C8 |
C7 |
H7 |
119.1 |
120.1 |
| C7 |
C8 |
C9 |
117.3 |
120.2 |
| C7 |
C8 |
N19 |
120.9 |
120.0 |
| C9 |
C8 |
N19 |
121.8 |
119.9 |
| C8 |
C9 |
C10 |
121.3 |
120.3 |
| C8 |
C9 |
H9 |
119.4 |
119.9 |
| C8 |
N19 |
O20 |
121.6 |
120.0 |
| C8 |
N19 |
O21 |
121.8 |
120.1 |
| C10 |
C9 |
H9 |
119.3 |
119.8 |
| C9 |
C10 |
C11 |
120.4 |
120.2 |
| C9 |
C10 |
H10 |
119.8 |
119.9 |
| C11 |
C10 |
H10 |
119.8 |
120.0 |
| C10 |
C11 |
H11 |
119.9 |
120.1 |
| S13 |
C14 |
N15 |
123.7 |
124.6 |
| C14 |
N15 |
C16 |
121.3 |
120.0 |
| C14 |
N15 |
HN15 |
105.7 |
119.9 |
| C16 |
N15 |
HN15 |
105.7 |
120.1 |
| N15 |
C16 |
C17 |
111.9 |
109.5 |
| N15 |
C16 |
H16 |
108.7 |
109.5 |
| N15 |
C16 |
H16A |
108.7 |
109.5 |
| C17 |
C16 |
H16 |
108.7 |
109.5 |
| C17 |
C16 |
H16A |
108.7 |
109.4 |
| C16 |
C17 |
C18 |
121.2 |
120.0 |
| C16 |
C17 |
H17 |
119.4 |
120.0 |
| H16 |
C16 |
H16A |
110.3 |
109.5 |
| C18 |
C17 |
H17 |
119.4 |
120.0 |
| C17 |
C18 |
H18 |
120.0 |
120.0 |
| C17 |
C18 |
H18A |
120.0 |
120.0 |
| H18 |
C18 |
H18A |
120.0 |
120.0 |
| O20 |
N19 |
O21 |
116.6 |
120.0 |
Torsion Angles for Z62
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
S13 |
0.2 |
360.0 |
| C2 |
N1 |
C14 |
N15 |
180.7 |
180.0 |
| N3 |
C2 |
N1 |
C4 |
179.7 |
180.0 |
| N1 |
C2 |
N3 |
HN3 |
0.0 |
360.0 |
| N1 |
C2 |
N3 |
HN3A |
120.0 |
180.0 |
| N1 |
C2 |
C4 |
C5 |
179.0 |
180.0 |
| N1 |
C2 |
C4 |
S13 |
359.5 |
359.9 |
| C14 |
N1 |
C2 |
N3 |
180.0 |
180.0 |
| C14 |
N1 |
C2 |
C4 |
0.2 |
0.0 |
| C4 |
S13 |
C14 |
N1 |
359.6 |
360.0 |
| S13 |
C14 |
N1 |
N15 |
179.5 |
180.0 |
| N1 |
C14 |
N15 |
C16 |
184.9 |
360.0 |
| N1 |
C14 |
N15 |
HN15 |
305.0 |
180.1 |
| N3 |
C2 |
N1 |
C14 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
180.3 |
180.0 |
| N3 |
C2 |
C4 |
C5 |
359.3 |
0.0 |
| N3 |
C2 |
C4 |
S13 |
179.7 |
180.0 |
| HN3 |
N3 |
C2 |
HN3A |
240.0 |
180.0 |
| C4 |
C2 |
N1 |
C14 |
0.2 |
0.0 |
| N1 |
C2 |
C4 |
N3 |
179.7 |
180.0 |
| C4 |
C2 |
N3 |
HN3 |
179.8 |
180.0 |
| C4 |
C2 |
N3 |
HN3A |
299.7 |
360.0 |
| C5 |
C4 |
C2 |
S13 |
179.6 |
180.1 |
| C2 |
C4 |
C5 |
C6 |
179.9 |
173.6 |
| C2 |
C4 |
C5 |
O12 |
358.9 |
353.5 |
| C2 |
C4 |
S13 |
C14 |
0.5 |
0.0 |
| HN3 |
N3 |
C2 |
C4 |
179.8 |
180.0 |
| C2 |
N3 |
HN3 |
HN3A |
120.0 |
180.0 |
| HN3A |
N3 |
C2 |
C4 |
299.7 |
360.0 |
| C2 |
N3 |
HN3A |
HN3 |
240.0 |
180.0 |
| C2 |
C4 |
C5 |
S13 |
180.5 |
179.9 |
| C5 |
C4 |
S13 |
C14 |
180.9 |
180.0 |
| C6 |
C5 |
C4 |
O12 |
181.0 |
180.1 |
| C4 |
C5 |
C6 |
C7 |
316.9 |
152.7 |
| C4 |
C5 |
C6 |
C11 |
138.0 |
332.3 |
| N1 |
C14 |
S13 |
C4 |
359.6 |
360.0 |
| C2 |
C4 |
S13 |
C5 |
179.6 |
180.1 |
| S13 |
C4 |
C5 |
C6 |
359.4 |
353.7 |
| S13 |
C4 |
C5 |
O12 |
178.4 |
173.6 |
| C4 |
S13 |
C14 |
N15 |
179.1 |
180.0 |
| C6 |
C5 |
C4 |
S13 |
359.4 |
353.7 |
| C4 |
C5 |
C6 |
O12 |
179.0 |
179.9 |
| C7 |
C6 |
C5 |
C11 |
178.9 |
180.4 |
| C5 |
C6 |
C7 |
C8 |
181.0 |
180.0 |
| C5 |
C6 |
C7 |
H7 |
1.0 |
359.9 |
| C5 |
C6 |
C11 |
C10 |
178.9 |
179.7 |
| C5 |
C6 |
C11 |
H11 |
358.9 |
0.0 |
| O12 |
C5 |
C4 |
S13 |
178.4 |
173.6 |
| C4 |
C5 |
O12 |
C6 |
180.9 |
180.1 |
| O12 |
C5 |
C6 |
C7 |
137.8 |
332.8 |
| O12 |
C5 |
C6 |
C11 |
318.9 |
152.4 |
| C7 |
C6 |
C5 |
O12 |
137.8 |
332.8 |
| C5 |
C6 |
C7 |
C11 |
181.1 |
179.6 |
| C7 |
C6 |
C11 |
C10 |
359.9 |
359.4 |
| C7 |
C6 |
C11 |
H11 |
179.9 |
179.7 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.1 |
| C6 |
C7 |
C8 |
C9 |
0.2 |
359.9 |
| C6 |
C7 |
C8 |
N19 |
180.3 |
179.9 |
| C11 |
C6 |
C5 |
O12 |
318.9 |
152.4 |
| C5 |
C6 |
C11 |
C7 |
178.9 |
180.4 |
| C11 |
C6 |
C7 |
C8 |
359.9 |
0.4 |
| C11 |
C6 |
C7 |
H7 |
179.9 |
180.2 |
| C9 |
C10 |
C11 |
C6 |
0.1 |
0.6 |
| C6 |
C11 |
C10 |
H10 |
180.1 |
180.3 |
| C10 |
C11 |
C6 |
H11 |
180.0 |
179.7 |
| C8 |
C7 |
C6 |
C11 |
359.9 |
0.4 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
N19 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
C10 |
359.8 |
0.1 |
| C7 |
C8 |
C9 |
H9 |
179.8 |
180.0 |
| C7 |
C8 |
N19 |
O20 |
0.6 |
360.0 |
| C7 |
C8 |
N19 |
O21 |
180.4 |
179.9 |
| H7 |
C7 |
C6 |
C11 |
179.9 |
180.2 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.1 |
| H7 |
C7 |
C8 |
C9 |
180.2 |
180.0 |
| H7 |
C7 |
C8 |
N19 |
0.3 |
0.1 |
| C9 |
C8 |
C7 |
H7 |
180.2 |
180.0 |
| C7 |
C8 |
C9 |
N19 |
180.0 |
180.0 |
| C9 |
C8 |
N19 |
O20 |
180.6 |
180.0 |
| C9 |
C8 |
N19 |
O21 |
0.5 |
360.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C8 |
C9 |
C10 |
C11 |
0.1 |
359.7 |
| C8 |
C9 |
C10 |
H10 |
180.0 |
180.0 |
| N19 |
C8 |
C7 |
H7 |
0.3 |
0.1 |
| C7 |
C8 |
N19 |
C9 |
180.0 |
180.0 |
| N19 |
C8 |
C9 |
C10 |
179.7 |
180.0 |
| N19 |
C8 |
C9 |
H9 |
359.8 |
360.0 |
| O20 |
N19 |
C8 |
O21 |
180.1 |
180.1 |
| C6 |
C11 |
C10 |
C9 |
0.1 |
0.6 |
| C10 |
C9 |
C8 |
N19 |
179.7 |
180.0 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
179.7 |
| C9 |
C10 |
C11 |
H11 |
180.1 |
180.3 |
| H9 |
C9 |
C8 |
N19 |
359.8 |
360.0 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
| H9 |
C9 |
C10 |
C11 |
180.0 |
179.7 |
| H9 |
C9 |
C10 |
H10 |
0.0 |
0.0 |
| C6 |
C11 |
C10 |
H11 |
180.0 |
180.3 |
| C11 |
C10 |
C9 |
H9 |
180.0 |
179.7 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.3 |
| H10 |
C10 |
C9 |
H9 |
0.0 |
0.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
179.7 |
| H10 |
C10 |
C11 |
H11 |
0.1 |
360.0 |
| C6 |
C11 |
H11 |
C10 |
180.0 |
179.7 |
| H11 |
C11 |
C10 |
H10 |
0.1 |
360.0 |
| N1 |
C14 |
S13 |
N15 |
180.5 |
180.0 |
| S13 |
C14 |
N15 |
C16 |
5.5 |
179.9 |
| S13 |
C14 |
N15 |
HN15 |
125.5 |
0.0 |
| N1 |
C14 |
N15 |
S13 |
179.4 |
180.0 |
| C16 |
N15 |
C14 |
HN15 |
240.0 |
179.9 |
| C14 |
N15 |
C16 |
C17 |
283.1 |
180.0 |
| C14 |
N15 |
C16 |
H16 |
43.1 |
300.0 |
| C14 |
N15 |
C16 |
H16A |
163.1 |
60.1 |
| C14 |
N15 |
C16 |
HN15 |
120.0 |
180.1 |
| C17 |
C16 |
N15 |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
N15 |
H16A |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
C18 |
116.8 |
125.0 |
| N15 |
C16 |
C17 |
H17 |
296.8 |
305.0 |
| H16 |
C16 |
N15 |
H16A |
240.0 |
240.0 |
| C14 |
N15 |
HN15 |
C16 |
230.2 |
179.9 |
| HN15 |
N15 |
C16 |
C17 |
163.1 |
359.9 |
| HN15 |
N15 |
C16 |
H16 |
283.1 |
120.0 |
| HN15 |
N15 |
C16 |
H16A |
43.1 |
240.0 |
| C17 |
C16 |
N15 |
HN15 |
163.1 |
359.9 |
| N15 |
C16 |
C17 |
H16 |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
H16A |
240.0 |
240.0 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18 |
180.0 |
0.0 |
| C16 |
C17 |
C18 |
H18A |
0.0 |
180.0 |
| H16 |
C16 |
N15 |
HN15 |
283.1 |
120.0 |
| N15 |
C16 |
H16 |
C17 |
238.0 |
240.0 |
| N15 |
C16 |
H16 |
H16A |
119.0 |
120.0 |
| C17 |
C16 |
H16 |
H16A |
241.0 |
240.1 |
| H16 |
C16 |
C17 |
C18 |
356.8 |
5.0 |
| H16 |
C16 |
C17 |
H17 |
176.8 |
185.0 |
| H16A |
C16 |
N15 |
HN15 |
43.1 |
240.0 |
| N15 |
C16 |
H16A |
C17 |
121.9 |
120.0 |
| N15 |
C16 |
H16A |
H16 |
241.0 |
240.0 |
| C17 |
C16 |
H16A |
H16 |
119.0 |
120.0 |
| H16A |
C16 |
C17 |
C18 |
236.8 |
245.0 |
| H16A |
C16 |
C17 |
H17 |
56.8 |
65.0 |
| C18 |
C17 |
C16 |
H16 |
356.8 |
5.0 |
| C18 |
C17 |
C16 |
H16A |
236.8 |
245.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H18A |
180.0 |
180.0 |
| H17 |
C17 |
C16 |
H16 |
176.8 |
185.0 |
| H17 |
C17 |
C16 |
H16A |
56.8 |
65.0 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
| H17 |
C17 |
C18 |
H18 |
0.0 |
180.0 |
| H17 |
C17 |
C18 |
H18A |
180.0 |
360.0 |
| H18 |
C18 |
C17 |
H17 |
0.0 |
180.0 |
| C17 |
C18 |
H18 |
H18A |
180.0 |
180.0 |
| H18A |
C18 |
C17 |
H17 |
180.0 |
360.0 |
| C17 |
C18 |
H18A |
H18 |
180.0 |
180.0 |
| C8 |
N19 |
O20 |
O21 |
179.9 |
179.9 |
| C8 |
N19 |
O21 |
O20 |
180.1 |
180.1 |