Atom Nomenclature for Z60

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Z60

Atom Name (V3) Atom Name (V2)
CL CL
N1 N1
C2 C2
N3 N3
C4 C4
C5 C5
C6 C6
O7 O7
S8 S8
C9 C9
N10 N10
C11 C11
C12 C12
C13 C13
S14 S14
C15 C15
C16 C16
C17 C17
H1N3 H1N3
H2N3 H2N3
HN10 HN10
H111 H111
H211 H211
H112 H112
H113 H113
H213 H213
H16 H16
H17 H17