PDB Chemical Component Z57
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z57
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2A |
C1A |
1.400 |
1.387 |
C1A |
O1 |
1.363 |
1.360 |
C1A |
C6A |
1.399 |
1.387 |
O1 |
HO1 |
0.950 |
0.967 |
C1 |
C2A |
1.538 |
1.507 |
C3A |
C2A |
1.394 |
1.382 |
C3A |
C4A |
1.393 |
1.386 |
C3A |
H3A |
1.080 |
1.080 |
O4A |
C4A |
1.355 |
1.360 |
C4A |
C5A |
1.389 |
1.388 |
O4A |
HO4A |
0.950 |
0.967 |
C5A |
C6A |
1.395 |
1.381 |
C5A |
BR5 |
1.901 |
1.891 |
C6A |
H6 |
1.080 |
1.080 |
C2 |
C1 |
1.542 |
1.530 |
C1 |
O5 |
1.457 |
1.428 |
C1 |
H1 |
1.100 |
1.090 |
C3 |
C2 |
1.549 |
1.531 |
O2 |
C2 |
1.439 |
1.429 |
C2 |
H2 |
1.100 |
1.091 |
O2 |
HO2 |
0.950 |
0.966 |
O3 |
C3 |
1.432 |
1.429 |
C3 |
C4 |
1.543 |
1.532 |
C3 |
H3 |
1.100 |
1.089 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
C4 |
1.436 |
1.429 |
C4 |
C5 |
1.547 |
1.531 |
C4 |
H4 |
1.100 |
1.089 |
O4 |
HO4 |
0.950 |
0.967 |
C5 |
C6 |
1.535 |
1.530 |
C5 |
O5 |
1.446 |
1.428 |
C5 |
H5 |
1.100 |
1.091 |
O6 |
C6 |
1.431 |
1.429 |
C6 |
H61 |
1.100 |
1.089 |
C6 |
H62 |
1.100 |
1.090 |
O6 |
HO6 |
0.950 |
0.966 |
Bond Angles for Z57
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2A |
C1A |
C6A |
120.2 |
120.0 |
O1 |
C1A |
C6A |
119.5 |
120.0 |
C1A |
O1 |
HO1 |
109.5 |
114.0 |
C1A |
C6A |
C5A |
119.6 |
120.0 |
C1A |
C6A |
H6 |
120.2 |
120.0 |
C4A |
C3A |
H3A |
120.1 |
120.0 |
C3A |
C4A |
C5A |
120.5 |
120.0 |
O4A |
C4A |
C5A |
119.4 |
120.0 |
C4A |
C5A |
C6A |
120.1 |
120.0 |
C4A |
C5A |
BR5 |
119.0 |
120.0 |
BR5 |
C5A |
C6A |
120.9 |
120.0 |
C5A |
C6A |
H6 |
120.2 |
120.0 |
C2 |
C1 |
O5 |
106.3 |
109.4 |
C2 |
C1 |
H1 |
105.2 |
109.5 |
O5 |
C1 |
H1 |
117.3 |
109.5 |
C1 |
O5 |
C5 |
110.8 |
114.1 |
C3 |
C2 |
H2 |
108.2 |
109.6 |
O2 |
C2 |
H2 |
106.7 |
109.4 |
O3 |
C3 |
C4 |
109.9 |
109.5 |
O3 |
C3 |
H3 |
109.0 |
109.6 |
C4 |
C3 |
H3 |
108.4 |
109.6 |
C3 |
C4 |
C5 |
111.5 |
109.1 |
C3 |
C4 |
H4 |
107.3 |
109.6 |
O4 |
C4 |
C5 |
109.4 |
109.5 |
O4 |
C4 |
H4 |
109.5 |
109.6 |
C5 |
C4 |
H4 |
108.5 |
109.5 |
C4 |
C5 |
C6 |
113.1 |
109.5 |
C4 |
C5 |
O5 |
109.6 |
109.4 |
C4 |
C5 |
H5 |
106.3 |
109.5 |
O5 |
C5 |
C6 |
107.4 |
109.5 |
C6 |
C5 |
H5 |
108.5 |
109.4 |
C5 |
C6 |
H61 |
109.6 |
109.5 |
C5 |
C6 |
H62 |
109.6 |
109.4 |
O5 |
C5 |
H5 |
112.0 |
109.5 |
O6 |
C6 |
H61 |
109.6 |
109.5 |
O6 |
C6 |
H62 |
109.6 |
109.4 |
H61 |
C6 |
H62 |
109.3 |
109.5 |
Torsion Angles for Z57
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1A |
C2A |
C6A |
179.8 |
179.8 |
C2A |
C1A |
O1 |
HO1 |
180.0 |
270.2 |
C2A |
C1A |
C6A |
C5A |
0.0 |
359.5 |
C2A |
C1A |
C6A |
H6 |
180.0 |
179.8 |
C2A |
C1A |
O1 |
C6A |
180.2 |
180.2 |
O1 |
C1A |
C6A |
C5A |
180.2 |
179.8 |
O1 |
C1A |
C6A |
H6 |
0.2 |
0.0 |
C6A |
C1A |
O1 |
HO1 |
359.8 |
90.0 |
C4A |
C5A |
C6A |
C1A |
359.6 |
0.4 |
BR5 |
C5A |
C6A |
C1A |
179.9 |
180.3 |
C5A |
C6A |
C1A |
H6 |
180.0 |
179.8 |
HO1 |
O1 |
C1A |
C6A |
359.8 |
90.0 |
C3A |
C2A |
C1A |
C6A |
0.7 |
0.2 |
O4A |
C4A |
C3A |
C5A |
179.5 |
180.0 |
C3A |
C4A |
C5A |
C6A |
0.1 |
359.8 |
C3A |
C4A |
C5A |
BR5 |
179.8 |
180.0 |
H3A |
C3A |
C4A |
C5A |
180.6 |
180.0 |
O4A |
C4A |
C3A |
H3A |
0.0 |
0.0 |
C3A |
C4A |
O4A |
C5A |
180.5 |
180.0 |
O4A |
C4A |
C5A |
C6A |
180.7 |
179.8 |
O4A |
C4A |
C5A |
BR5 |
0.3 |
360.0 |
C1A |
C6A |
C5A |
C4A |
359.6 |
0.4 |
C5A |
C4A |
C3A |
H3A |
180.6 |
180.0 |
BR5 |
C5A |
C4A |
C6A |
179.7 |
180.2 |
C4A |
C5A |
C6A |
H6 |
179.6 |
180.2 |
HO4A |
O4A |
C4A |
C5A |
359.5 |
270.1 |
C1A |
C6A |
C5A |
H6 |
180.0 |
180.2 |
C4A |
C5A |
C6A |
BR5 |
179.7 |
180.2 |
C1A |
C6A |
C5A |
BR5 |
179.9 |
180.3 |
C4A |
C5A |
BR5 |
C6A |
180.3 |
179.8 |
BR5 |
C5A |
C6A |
H6 |
359.9 |
0.0 |
C1A |
C6A |
H6 |
C5A |
180.0 |
179.8 |
O5 |
C1 |
C2 |
H1 |
125.0 |
120.0 |
C2 |
C1 |
O5 |
C5 |
289.7 |
298.9 |
C2 |
C1 |
O5 |
H1 |
242.8 |
240.0 |
C4 |
C5 |
O5 |
C1 |
65.3 |
61.1 |
C1 |
O5 |
C5 |
C6 |
188.5 |
181.1 |
C1 |
O5 |
C5 |
H5 |
307.6 |
301.1 |
C2 |
C1 |
H1 |
O5 |
117.8 |
120.0 |
H1 |
C1 |
O5 |
C5 |
46.9 |
58.9 |
C3 |
C2 |
C1 |
O5 |
62.5 |
57.6 |
C3 |
C2 |
C1 |
H1 |
297.4 |
297.6 |
O2 |
C2 |
C3 |
H2 |
117.4 |
120.1 |
O2 |
C2 |
C1 |
O5 |
186.5 |
177.6 |
O2 |
C2 |
C1 |
H1 |
61.5 |
57.6 |
C3 |
C2 |
O2 |
H2 |
241.7 |
239.8 |
H2 |
C2 |
C1 |
O5 |
304.0 |
297.6 |
H2 |
C2 |
C1 |
H1 |
179.0 |
177.6 |
HO2 |
O2 |
C2 |
H2 |
60.9 |
59.9 |
O3 |
C3 |
C2 |
H2 |
304.4 |
303.1 |
C4 |
C3 |
O3 |
H3 |
118.7 |
120.2 |
O3 |
C3 |
C4 |
C5 |
169.7 |
176.8 |
O3 |
C3 |
C4 |
H4 |
51.0 |
57.0 |
C4 |
C3 |
C2 |
H2 |
66.6 |
62.9 |
O3 |
C3 |
C4 |
H3 |
240.9 |
239.7 |
O4 |
C4 |
C3 |
C5 |
122.0 |
119.9 |
O4 |
C4 |
C3 |
H4 |
240.7 |
239.8 |
C5 |
C4 |
C3 |
H4 |
118.7 |
119.9 |
C3 |
C4 |
C5 |
C6 |
187.9 |
182.4 |
C3 |
C4 |
C5 |
O5 |
307.7 |
302.4 |
C3 |
C4 |
C5 |
H5 |
69.0 |
62.4 |
H3 |
C3 |
C2 |
H2 |
185.3 |
182.8 |
O3 |
C3 |
H3 |
C4 |
119.7 |
120.2 |
H3 |
C3 |
C4 |
C5 |
288.8 |
297.1 |
H3 |
C3 |
C4 |
H4 |
170.1 |
177.2 |
HO3 |
O3 |
C3 |
C4 |
57.1 |
60.5 |
HO3 |
O3 |
C3 |
H3 |
298.4 |
300.3 |
O4 |
C4 |
C3 |
H3 |
50.8 |
57.0 |
C3 |
C4 |
O4 |
C5 |
236.8 |
240.3 |
C3 |
C4 |
O4 |
H4 |
118.0 |
120.2 |
C5 |
C4 |
O4 |
H4 |
241.2 |
239.9 |
O4 |
C4 |
C5 |
C6 |
65.2 |
62.4 |
O4 |
C4 |
C5 |
O5 |
185.0 |
182.5 |
O4 |
C4 |
C5 |
H5 |
306.3 |
302.5 |
C1 |
O5 |
C5 |
C4 |
65.3 |
61.1 |
C5 |
C4 |
C3 |
H3 |
288.8 |
297.1 |
C3 |
C4 |
C5 |
H4 |
242.1 |
240.1 |
O4 |
C4 |
C5 |
H4 |
119.4 |
120.2 |
O5 |
C5 |
C4 |
C6 |
119.9 |
120.0 |
C6 |
C5 |
C4 |
H5 |
118.9 |
120.0 |
C4 |
C5 |
C6 |
H61 |
170.2 |
305.0 |
C4 |
C5 |
C6 |
H62 |
290.1 |
65.0 |
O5 |
C5 |
C4 |
H5 |
238.7 |
240.0 |
H4 |
C4 |
C3 |
H3 |
170.1 |
177.2 |
C3 |
C4 |
H4 |
C5 |
120.6 |
119.7 |
O4 |
C4 |
H4 |
C5 |
240.7 |
239.9 |
H4 |
C4 |
C5 |
C6 |
305.8 |
302.3 |
H4 |
C4 |
C5 |
O5 |
65.7 |
62.3 |
H4 |
C4 |
C5 |
H5 |
186.9 |
182.3 |
HO4 |
O4 |
C4 |
C5 |
303.2 |
179.6 |
HO4 |
O4 |
C4 |
H4 |
62.0 |
299.8 |
C6 |
C5 |
C4 |
H4 |
305.8 |
302.3 |
C4 |
C5 |
C6 |
O5 |
121.1 |
120.0 |
C4 |
C5 |
C6 |
H5 |
242.4 |
240.0 |
O5 |
C5 |
C6 |
H5 |
121.3 |
120.0 |
O6 |
C6 |
C5 |
H61 |
240.0 |
239.9 |
O6 |
C6 |
C5 |
H62 |
120.0 |
119.9 |
H61 |
C6 |
C5 |
H62 |
240.0 |
240.0 |
C5 |
O5 |
C1 |
H1 |
46.9 |
58.9 |
O5 |
C5 |
C4 |
H4 |
65.7 |
62.3 |
C4 |
C5 |
O5 |
C6 |
236.7 |
240.0 |
C4 |
C5 |
O5 |
H5 |
117.7 |
120.0 |
C6 |
C5 |
O5 |
H5 |
241.0 |
240.0 |
O5 |
C5 |
C6 |
H61 |
49.1 |
185.0 |
O5 |
C5 |
C6 |
H62 |
169.0 |
305.0 |
H5 |
C5 |
C4 |
H4 |
186.9 |
182.3 |
C4 |
C5 |
H5 |
C6 |
121.9 |
120.0 |
C4 |
C5 |
H5 |
O5 |
240.3 |
240.0 |
O5 |
C5 |
H5 |
C6 |
241.6 |
240.0 |
H5 |
C5 |
C6 |
H61 |
287.8 |
65.1 |
H5 |
C5 |
C6 |
H62 |
47.7 |
185.1 |
O6 |
C6 |
C5 |
H5 |
167.8 |
305.0 |
C5 |
C6 |
O6 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
O6 |
H62 |
240.0 |
240.1 |
H61 |
C6 |
O6 |
H62 |
120.0 |
120.1 |
H61 |
C6 |
C5 |
H5 |
287.8 |
65.1 |
C5 |
C6 |
H61 |
H62 |
120.1 |
119.9 |
O6 |
C6 |
H61 |
H62 |
239.8 |
240.0 |
H62 |
C6 |
C5 |
H5 |
47.7 |
185.1 |
C5 |
C6 |
H62 |
H61 |
239.9 |
240.0 |
O6 |
C6 |
H62 |
H61 |
120.2 |
120.1 |
HO6 |
O6 |
C6 |
H61 |
60.0 |
60.0 |
HO6 |
O6 |
C6 |
H62 |
300.0 |
299.9 |