PDB Chemical Component Z31
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z31
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.474 |
1.310 |
| C1 |
H1 |
1.080 |
1.080 |
| C1 |
H1A |
1.080 |
1.080 |
| C3 |
C2 |
1.362 |
1.507 |
| C2 |
H2 |
1.080 |
1.080 |
| N4 |
C3 |
1.462 |
1.464 |
| C3 |
H3 |
1.100 |
1.091 |
| C3 |
H3A |
1.100 |
1.090 |
| C5 |
N4 |
1.371 |
1.376 |
| N4 |
HN4 |
1.000 |
0.970 |
| N9 |
C5 |
1.333 |
1.302 |
| C5 |
S6 |
1.705 |
1.709 |
| C7 |
S6 |
1.709 |
1.761 |
| C8 |
C7 |
1.409 |
1.383 |
| C7 |
C11 |
1.371 |
1.407 |
| N10 |
C8 |
1.343 |
1.386 |
| C8 |
N9 |
1.349 |
1.313 |
| N10 |
HN10 |
1.000 |
0.970 |
| N10 |
HN1A |
1.000 |
0.969 |
| O22 |
C11 |
1.359 |
1.220 |
| C11 |
C12 |
1.507 |
1.479 |
| C12 |
C17 |
1.427 |
1.406 |
| C12 |
C13 |
1.444 |
1.385 |
| C13 |
C14 |
1.429 |
1.402 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.455 |
1.419 |
| C14 |
C18 |
1.437 |
1.407 |
| C16 |
C15 |
1.421 |
1.406 |
| C15 |
C21 |
1.434 |
1.404 |
| C17 |
C16 |
1.428 |
1.358 |
| C16 |
H16 |
1.080 |
1.080 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
C19 |
1.428 |
1.360 |
| C18 |
H18 |
1.080 |
1.080 |
| C19 |
C20 |
1.426 |
1.394 |
| C19 |
H19 |
1.080 |
1.080 |
| C21 |
C20 |
1.426 |
1.362 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
H21 |
1.080 |
1.080 |
Bond Angles for Z31
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
120.0 |
120.0 |
| C3 |
C2 |
H2 |
119.2 |
120.0 |
| N4 |
C3 |
H3 |
109.1 |
109.5 |
| N4 |
C3 |
H3A |
109.1 |
109.5 |
| H3 |
C3 |
H3A |
109.8 |
109.4 |
| C5 |
N4 |
HN4 |
106.2 |
120.0 |
| C8 |
C7 |
C11 |
128.5 |
126.1 |
| C7 |
C11 |
C12 |
121.7 |
120.0 |
| HN10 |
N10 |
HN1A |
109.4 |
120.0 |
| C11 |
C12 |
C17 |
119.1 |
119.8 |
| C11 |
C12 |
C13 |
121.8 |
119.7 |
| C13 |
C12 |
C17 |
119.1 |
120.5 |
| C12 |
C17 |
C16 |
120.7 |
120.9 |
| C12 |
C17 |
H17 |
119.6 |
119.6 |
| C12 |
C13 |
C14 |
120.6 |
119.5 |
| C12 |
C13 |
H13 |
119.7 |
120.3 |
| C14 |
C13 |
H13 |
119.7 |
120.3 |
| C13 |
C14 |
C15 |
119.3 |
119.5 |
| C13 |
C14 |
C18 |
121.0 |
121.1 |
| C15 |
C14 |
C18 |
119.7 |
119.4 |
| C14 |
C15 |
C21 |
119.5 |
119.3 |
| C14 |
C18 |
C19 |
119.8 |
119.7 |
| C14 |
C18 |
H18 |
120.1 |
120.1 |
| C16 |
C15 |
C21 |
120.8 |
121.1 |
| C15 |
C21 |
C20 |
120.0 |
119.8 |
| C15 |
C21 |
H21 |
120.0 |
120.1 |
| C17 |
C16 |
H16 |
119.7 |
120.0 |
| C19 |
C18 |
H18 |
120.1 |
120.2 |
| C18 |
C19 |
C20 |
120.4 |
121.0 |
| C18 |
C19 |
H19 |
119.8 |
119.6 |
| C20 |
C19 |
H19 |
119.8 |
119.5 |
| C19 |
C20 |
H20 |
119.7 |
119.5 |
| C21 |
C20 |
H20 |
119.7 |
119.5 |
Torsion Angles for Z31
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
180.0 |
180.2 |
| C2 |
C1 |
H1 |
H1A |
180.0 |
179.8 |
| C2 |
C1 |
H1A |
H1 |
180.0 |
180.2 |
| C3 |
C2 |
C1 |
H1 |
360.0 |
359.9 |
| C3 |
C2 |
C1 |
H1A |
180.0 |
179.8 |
| H2 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
H1A |
360.0 |
359.8 |
| N4 |
C3 |
C2 |
H2 |
265.3 |
305.0 |
| H3 |
C3 |
N4 |
H3A |
120.0 |
120.0 |
| H3 |
C3 |
C2 |
H2 |
25.4 |
65.0 |
| N4 |
C3 |
H3 |
H3A |
240.5 |
240.0 |
| H3A |
C3 |
C2 |
H2 |
145.4 |
185.0 |
| N4 |
C3 |
H3A |
H3 |
119.5 |
120.0 |
| C5 |
N4 |
C3 |
H3 |
123.6 |
60.0 |
| C5 |
N4 |
C3 |
H3A |
3.6 |
300.0 |
| HN4 |
N4 |
C3 |
H3 |
243.6 |
240.0 |
| HN4 |
N4 |
C3 |
H3A |
123.6 |
120.0 |
| N9 |
C5 |
N4 |
HN4 |
72.5 |
179.7 |
| S6 |
C5 |
N4 |
HN4 |
253.0 |
0.0 |
| C8 |
C7 |
C11 |
C12 |
181.0 |
186.5 |
| C7 |
C11 |
C12 |
C17 |
129.8 |
208.1 |
| C7 |
C11 |
C12 |
C13 |
311.0 |
28.4 |
| N10 |
C8 |
C7 |
C11 |
359.2 |
360.0 |
| N9 |
C8 |
C7 |
C11 |
178.6 |
179.7 |
| C13 |
C12 |
C11 |
C17 |
181.2 |
180.3 |
| C11 |
C12 |
C17 |
C16 |
181.2 |
179.7 |
| C11 |
C12 |
C17 |
H17 |
1.2 |
0.0 |
| C11 |
C12 |
C13 |
C14 |
178.5 |
180.0 |
| C11 |
C12 |
C13 |
H13 |
358.6 |
360.0 |
| C11 |
C12 |
C17 |
C13 |
181.1 |
180.3 |
| C17 |
C12 |
C13 |
C14 |
359.7 |
0.3 |
| C17 |
C12 |
C13 |
H13 |
179.7 |
180.3 |
| C12 |
C17 |
C16 |
H16 |
180.2 |
180.2 |
| C11 |
C12 |
C13 |
C17 |
178.8 |
179.7 |
| C13 |
C12 |
C17 |
C16 |
0.1 |
359.5 |
| C13 |
C12 |
C17 |
H17 |
180.1 |
179.8 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
C15 |
0.2 |
359.9 |
| C12 |
C13 |
C14 |
C18 |
180.4 |
180.0 |
| C14 |
C13 |
C12 |
C17 |
359.7 |
0.3 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
C18 |
179.8 |
180.0 |
| C13 |
C14 |
C15 |
C21 |
180.3 |
180.0 |
| C13 |
C14 |
C18 |
C19 |
179.7 |
180.0 |
| C13 |
C14 |
C18 |
H18 |
359.7 |
359.9 |
| H13 |
C13 |
C12 |
C17 |
179.7 |
180.3 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.0 |
| H13 |
C13 |
C14 |
C15 |
180.2 |
180.0 |
| H13 |
C13 |
C14 |
C18 |
0.4 |
0.0 |
| C15 |
C14 |
C13 |
H13 |
180.2 |
180.0 |
| C13 |
C14 |
C15 |
C18 |
180.2 |
180.0 |
| C15 |
C14 |
C18 |
C19 |
359.9 |
0.0 |
| C15 |
C14 |
C18 |
H18 |
179.9 |
180.0 |
| C16 |
C15 |
C14 |
C21 |
179.8 |
180.0 |
| C14 |
C15 |
C21 |
C20 |
360.0 |
0.0 |
| C14 |
C15 |
C21 |
H21 |
179.9 |
180.0 |
| C18 |
C14 |
C13 |
H13 |
0.4 |
0.0 |
| C13 |
C14 |
C18 |
C15 |
179.8 |
180.0 |
| C18 |
C14 |
C15 |
C21 |
0.1 |
360.0 |
| C19 |
C18 |
C14 |
H18 |
180.0 |
180.0 |
| C14 |
C18 |
C19 |
C20 |
0.0 |
0.0 |
| C14 |
C18 |
C19 |
H19 |
180.0 |
180.0 |
| C12 |
C17 |
C16 |
C15 |
0.2 |
0.5 |
| C16 |
C15 |
C14 |
C18 |
179.9 |
180.0 |
| C14 |
C15 |
C16 |
C21 |
180.2 |
180.0 |
| C16 |
C15 |
C21 |
C20 |
180.1 |
180.0 |
| C16 |
C15 |
C21 |
H21 |
0.1 |
359.9 |
| C21 |
C15 |
C14 |
C18 |
0.1 |
360.0 |
| C15 |
C21 |
C20 |
H20 |
180.0 |
180.0 |
| C12 |
C17 |
C16 |
H17 |
180.0 |
180.3 |
| C17 |
C16 |
C15 |
C21 |
179.5 |
179.8 |
| H16 |
C16 |
C15 |
C21 |
359.5 |
0.0 |
| C12 |
C17 |
H17 |
C16 |
180.0 |
179.7 |
| H17 |
C17 |
C16 |
H16 |
0.2 |
360.0 |
| C14 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
| C18 |
C19 |
C20 |
H20 |
180.0 |
180.0 |
| C14 |
C18 |
H18 |
C19 |
180.0 |
180.0 |
| H18 |
C18 |
C19 |
C20 |
180.0 |
180.1 |
| H18 |
C18 |
C19 |
H19 |
0.0 |
0.0 |
| C15 |
C21 |
C20 |
C19 |
360.0 |
0.0 |
| C20 |
C19 |
C18 |
H18 |
180.0 |
180.1 |
| C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
| C21 |
C20 |
C19 |
H20 |
180.0 |
180.0 |
| H19 |
C19 |
C18 |
H18 |
0.0 |
0.0 |
| C18 |
C19 |
H19 |
C20 |
180.0 |
180.0 |
| H19 |
C19 |
C20 |
H20 |
0.0 |
360.0 |
| C15 |
C21 |
C20 |
H21 |
180.0 |
180.0 |
| C21 |
C20 |
C19 |
H19 |
180.0 |
180.0 |
| C19 |
C20 |
C21 |
H20 |
180.0 |
180.0 |
| H20 |
C20 |
C19 |
H19 |
0.0 |
360.0 |
| C15 |
C21 |
H21 |
C20 |
180.0 |
180.0 |
| H21 |
C21 |
C20 |
H20 |
360.0 |
0.1 |