PDB Chemical Component Z19
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z19
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
N2 |
1.359 |
1.284 |
| N1 |
C5 |
1.318 |
1.316 |
| N2 |
C3 |
1.384 |
1.370 |
| C3 |
C4 |
1.448 |
1.409 |
| C3 |
C10 |
1.431 |
1.392 |
| C4 |
C5 |
1.451 |
1.469 |
| C4 |
C13 |
1.442 |
1.392 |
| C5 |
C6 |
1.501 |
1.475 |
| C6 |
N7 |
1.334 |
1.348 |
| C6 |
O9 |
1.236 |
1.216 |
| N7 |
N8 |
1.389 |
1.366 |
| C10 |
C11 |
1.432 |
1.367 |
| C11 |
C12 |
1.431 |
1.389 |
| C12 |
C13 |
1.438 |
1.366 |
| N2 |
HN2 |
1.000 |
0.970 |
| N7 |
HN7 |
1.000 |
0.969 |
| N8 |
HN8 |
1.000 |
1.008 |
| N8 |
HN8A |
1.000 |
1.009 |
| C10 |
H10 |
1.080 |
1.079 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
Bond Angles for Z19
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
C5 |
106.5 |
111.9 |
| N1 |
N2 |
C3 |
113.8 |
111.3 |
| N1 |
N2 |
HN2 |
123.1 |
124.3 |
| N1 |
C5 |
C4 |
111.2 |
106.4 |
| N1 |
C5 |
C6 |
126.0 |
126.8 |
| N2 |
C3 |
C4 |
103.9 |
106.1 |
| N2 |
C3 |
C10 |
133.8 |
134.7 |
| C3 |
N2 |
HN2 |
123.1 |
124.4 |
| C4 |
C3 |
C10 |
122.3 |
119.2 |
| C3 |
C4 |
C5 |
104.5 |
104.3 |
| C3 |
C4 |
C13 |
117.3 |
120.1 |
| C3 |
C10 |
C11 |
119.1 |
119.7 |
| C3 |
C10 |
H10 |
120.4 |
120.1 |
| C5 |
C4 |
C13 |
138.2 |
135.6 |
| C4 |
C5 |
C6 |
122.7 |
126.8 |
| C4 |
C13 |
C12 |
120.9 |
119.5 |
| C4 |
C13 |
H13 |
119.6 |
120.2 |
| C5 |
C6 |
N7 |
115.2 |
120.0 |
| C5 |
C6 |
O9 |
121.7 |
120.0 |
| N7 |
C6 |
O9 |
123.1 |
120.0 |
| C6 |
N7 |
N8 |
121.0 |
120.0 |
| C6 |
N7 |
HN7 |
119.5 |
120.0 |
| N8 |
N7 |
HN7 |
119.5 |
120.0 |
| N7 |
N8 |
HN8 |
109.5 |
111.0 |
| N7 |
N8 |
HN8A |
109.4 |
111.0 |
| C10 |
C11 |
C12 |
119.9 |
120.9 |
| C11 |
C10 |
H10 |
120.4 |
120.1 |
| C10 |
C11 |
H11 |
120.0 |
119.5 |
| C11 |
C12 |
C13 |
120.5 |
120.5 |
| C12 |
C11 |
H11 |
120.0 |
119.6 |
| C11 |
C12 |
H12 |
119.7 |
119.7 |
| C13 |
C12 |
H12 |
119.8 |
119.8 |
| C12 |
C13 |
H13 |
119.6 |
120.3 |
| HN8 |
N8 |
HN8A |
109.5 |
111.1 |
Torsion Angles for Z19
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
C5 |
C4 |
0.1 |
360.0 |
| N2 |
N1 |
C5 |
C6 |
180.1 |
180.0 |
| N1 |
N2 |
C3 |
C4 |
0.2 |
360.0 |
| N1 |
N2 |
C3 |
C10 |
180.0 |
180.0 |
| C3 |
N2 |
N1 |
HN2 |
180.0 |
180.0 |
| C5 |
N1 |
N2 |
C3 |
359.8 |
0.0 |
| C5 |
N1 |
N2 |
HN2 |
179.8 |
180.0 |
| C3 |
C4 |
C5 |
N1 |
0.0 |
360.0 |
| N1 |
C5 |
C4 |
C13 |
180.1 |
179.9 |
| C4 |
C5 |
N1 |
C6 |
180.0 |
180.0 |
| N1 |
C5 |
C6 |
N7 |
359.7 |
0.1 |
| N1 |
C5 |
C6 |
O9 |
180.1 |
180.0 |
| C3 |
N2 |
N1 |
C5 |
359.8 |
0.0 |
| N1 |
N2 |
C3 |
HN2 |
180.0 |
180.0 |
| C4 |
C3 |
N2 |
C10 |
180.2 |
180.0 |
| N2 |
C3 |
C4 |
C5 |
359.9 |
0.0 |
| N2 |
C3 |
C4 |
C13 |
179.8 |
180.1 |
| N2 |
C3 |
C10 |
C11 |
180.3 |
180.0 |
| N2 |
C3 |
C10 |
H10 |
0.3 |
360.0 |
| N1 |
C5 |
C4 |
C3 |
0.0 |
360.0 |
| N2 |
C3 |
C4 |
C10 |
179.8 |
180.0 |
| C4 |
C3 |
N2 |
HN2 |
180.2 |
180.0 |
| C4 |
C3 |
C10 |
C11 |
0.1 |
360.0 |
| C4 |
C3 |
C10 |
H10 |
180.1 |
180.0 |
| C5 |
C4 |
C3 |
C13 |
180.1 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
| C3 |
C4 |
C13 |
C12 |
360.0 |
359.9 |
| C3 |
C4 |
C13 |
H13 |
179.9 |
180.0 |
| N2 |
C3 |
C10 |
C4 |
180.2 |
180.0 |
| C10 |
C3 |
N2 |
HN2 |
360.0 |
0.1 |
| C10 |
C3 |
C4 |
C5 |
180.1 |
180.0 |
| C10 |
C3 |
C4 |
C13 |
360.0 |
0.1 |
| C3 |
C10 |
C11 |
C12 |
359.8 |
360.0 |
| C11 |
C10 |
C3 |
H10 |
180.0 |
180.0 |
| C3 |
C10 |
C11 |
H11 |
179.8 |
180.0 |
| N1 |
C5 |
C4 |
C6 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
C10 |
180.1 |
180.0 |
| C3 |
C4 |
C5 |
C13 |
179.9 |
180.1 |
| C5 |
C4 |
C13 |
C12 |
179.9 |
180.0 |
| C5 |
C4 |
C13 |
H13 |
359.8 |
0.1 |
| C4 |
C5 |
C6 |
N7 |
179.8 |
180.1 |
| C4 |
C5 |
C6 |
O9 |
0.1 |
0.0 |
| C13 |
C4 |
C3 |
C10 |
360.0 |
0.1 |
| C3 |
C4 |
C13 |
C5 |
180.1 |
179.9 |
| C13 |
C4 |
C5 |
C6 |
0.1 |
360.0 |
| C11 |
C12 |
C13 |
C4 |
360.0 |
0.1 |
| C4 |
C13 |
C12 |
H12 |
180.0 |
180.1 |
| C12 |
C13 |
C4 |
H13 |
180.0 |
179.9 |
| N1 |
C5 |
C6 |
C4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C13 |
0.1 |
360.0 |
| N7 |
C6 |
C5 |
O9 |
179.7 |
180.0 |
| C5 |
C6 |
N7 |
N8 |
180.6 |
180.0 |
| C5 |
C6 |
N7 |
HN7 |
0.6 |
359.9 |
| C5 |
C6 |
N7 |
O9 |
180.3 |
180.0 |
| N8 |
N7 |
C6 |
HN7 |
180.0 |
180.0 |
| C6 |
N7 |
N8 |
HN8 |
180.0 |
179.9 |
| C6 |
N7 |
N8 |
HN8A |
300.0 |
304.0 |
| C5 |
C6 |
O9 |
N7 |
179.6 |
180.0 |
| O9 |
C6 |
N7 |
N8 |
0.3 |
0.0 |
| O9 |
C6 |
N7 |
HN7 |
180.3 |
180.0 |
| N8 |
N7 |
C6 |
O9 |
0.3 |
0.0 |
| C6 |
N7 |
N8 |
HN7 |
180.0 |
180.0 |
| HN8 |
N8 |
N7 |
HN8A |
240.0 |
236.0 |
| C3 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.1 |
360.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H12 |
180.1 |
180.0 |
| C4 |
C13 |
C12 |
C11 |
360.0 |
0.1 |
| C12 |
C11 |
C10 |
H10 |
179.8 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H13 |
180.0 |
180.0 |
| C4 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
| C13 |
C12 |
C11 |
H11 |
180.1 |
179.9 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| HN2 |
N2 |
N1 |
C5 |
179.8 |
180.0 |
| N1 |
N2 |
HN2 |
C3 |
180.0 |
180.1 |
| HN2 |
N2 |
C3 |
C4 |
180.2 |
180.0 |
| HN2 |
N2 |
C3 |
C10 |
360.0 |
0.1 |
| HN7 |
N7 |
C6 |
O9 |
180.3 |
180.0 |
| C6 |
N7 |
HN7 |
N8 |
180.0 |
180.0 |
| HN7 |
N7 |
N8 |
HN8 |
360.0 |
360.0 |
| HN7 |
N7 |
N8 |
HN8A |
120.0 |
124.0 |
| HN8 |
N8 |
N7 |
HN7 |
360.0 |
360.0 |
| N7 |
N8 |
HN8 |
HN8A |
120.0 |
124.0 |
| HN8A |
N8 |
N7 |
HN7 |
120.0 |
124.0 |
| N7 |
N8 |
HN8A |
HN8 |
240.0 |
236.0 |
| C3 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
| H10 |
C10 |
C11 |
C12 |
179.8 |
180.0 |
| H10 |
C10 |
C11 |
H11 |
359.9 |
0.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C10 |
H10 |
359.9 |
0.0 |
| H11 |
C11 |
C12 |
C13 |
180.1 |
179.9 |
| H11 |
C11 |
C12 |
H12 |
0.1 |
360.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C11 |
H11 |
0.1 |
360.0 |
| H12 |
C12 |
C13 |
H13 |
360.0 |
359.9 |
| C4 |
C13 |
H13 |
C12 |
180.0 |
179.9 |
| H13 |
C13 |
C12 |
H12 |
360.0 |
359.9 |