PDB Chemical Component Z16
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Z16
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2A |
C1A |
1.399 |
1.386 |
C1A |
O1 |
1.362 |
1.360 |
C1A |
C6A |
1.394 |
1.388 |
O1 |
HO1 |
0.950 |
0.967 |
C1 |
C2A |
1.538 |
1.507 |
C3A |
C2A |
1.396 |
1.382 |
C3A |
C4A |
1.395 |
1.387 |
C3A |
H3A |
1.080 |
1.080 |
O4A |
C4A |
1.356 |
1.360 |
C4A |
C5A |
1.391 |
1.387 |
O4A |
HO4A |
0.950 |
0.967 |
C5A |
C6A |
1.390 |
1.382 |
C5A |
H5A |
1.080 |
1.081 |
C6A |
CL6 |
1.728 |
1.736 |
C2 |
C1 |
1.540 |
1.531 |
C1 |
O5 |
1.464 |
1.429 |
C1 |
H1 |
1.099 |
1.090 |
C3 |
C2 |
1.540 |
1.532 |
O2 |
C2 |
1.429 |
1.429 |
C2 |
H2 |
1.100 |
1.090 |
O2 |
HO2 |
0.950 |
0.968 |
O3 |
C3 |
1.431 |
1.428 |
C3 |
C4 |
1.540 |
1.532 |
C3 |
H3 |
1.101 |
1.090 |
O3 |
HO3 |
0.950 |
0.968 |
O4 |
C4 |
1.425 |
1.429 |
C4 |
C5 |
1.548 |
1.531 |
C4 |
H4 |
1.100 |
1.090 |
O4 |
HO4 |
0.950 |
0.967 |
C5 |
C6 |
1.538 |
1.530 |
C5 |
O5 |
1.449 |
1.429 |
C5 |
H5 |
1.100 |
1.090 |
O6 |
C6 |
1.432 |
1.430 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
O6 |
HO6 |
0.950 |
0.966 |
Bond Angles for Z16
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2A |
C1A |
C6A |
120.3 |
120.0 |
O1 |
C1A |
C6A |
118.8 |
120.0 |
C1A |
O1 |
HO1 |
109.5 |
114.0 |
C1A |
C6A |
C5A |
120.3 |
120.0 |
C1A |
C6A |
CL6 |
120.0 |
120.0 |
C4A |
C3A |
H3A |
119.9 |
120.0 |
C3A |
C4A |
C5A |
120.4 |
120.0 |
O4A |
C4A |
C5A |
119.4 |
120.0 |
C4A |
C5A |
C6A |
119.6 |
120.0 |
C4A |
C5A |
H5A |
120.2 |
120.0 |
C6A |
C5A |
H5A |
120.2 |
120.0 |
C5A |
C6A |
CL6 |
119.7 |
120.0 |
C2 |
C1 |
O5 |
107.4 |
109.4 |
C2 |
C1 |
H1 |
105.2 |
109.5 |
O5 |
C1 |
H1 |
115.4 |
109.5 |
C1 |
O5 |
C5 |
110.9 |
114.1 |
C3 |
C2 |
H2 |
108.5 |
109.5 |
O2 |
C2 |
H2 |
108.3 |
109.5 |
O3 |
C3 |
C4 |
109.8 |
109.6 |
O3 |
C3 |
H3 |
109.3 |
109.7 |
C4 |
C3 |
H3 |
108.3 |
109.5 |
C3 |
C4 |
C5 |
111.7 |
109.2 |
C3 |
C4 |
H4 |
108.1 |
109.5 |
O4 |
C4 |
C5 |
109.3 |
109.5 |
O4 |
C4 |
H4 |
110.6 |
109.6 |
C5 |
C4 |
H4 |
108.0 |
109.5 |
C4 |
C5 |
C6 |
113.3 |
109.5 |
C4 |
C5 |
O5 |
110.7 |
109.4 |
C4 |
C5 |
H5 |
105.7 |
109.5 |
O5 |
C5 |
C6 |
108.7 |
109.5 |
C6 |
C5 |
H5 |
107.9 |
109.5 |
C5 |
C6 |
H61 |
109.2 |
109.5 |
C5 |
C6 |
H62 |
109.2 |
109.5 |
O5 |
C5 |
H5 |
110.5 |
109.5 |
O6 |
C6 |
H61 |
109.2 |
109.5 |
O6 |
C6 |
H62 |
109.2 |
109.4 |
H61 |
C6 |
H62 |
109.7 |
109.5 |
Torsion Angles for Z16
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1A |
C2A |
C6A |
180.1 |
179.8 |
C2A |
C1A |
O1 |
HO1 |
180.0 |
270.3 |
C2A |
C1A |
C6A |
C5A |
0.0 |
359.5 |
C2A |
C1A |
C6A |
CL6 |
180.3 |
179.7 |
C2A |
C1A |
O1 |
C6A |
179.9 |
180.2 |
O1 |
C1A |
C6A |
C5A |
179.9 |
179.8 |
O1 |
C1A |
C6A |
CL6 |
0.2 |
360.0 |
C6A |
C1A |
O1 |
HO1 |
0.1 |
90.0 |
C4A |
C5A |
C6A |
C1A |
0.1 |
0.4 |
C1A |
C6A |
C5A |
H5A |
180.1 |
180.2 |
C5A |
C6A |
C1A |
CL6 |
179.7 |
179.8 |
HO1 |
O1 |
C1A |
C6A |
0.1 |
90.0 |
C3A |
C2A |
C1A |
C6A |
0.3 |
0.2 |
O4A |
C4A |
C3A |
C5A |
179.5 |
180.0 |
C3A |
C4A |
C5A |
C6A |
359.6 |
359.9 |
C3A |
C4A |
C5A |
H5A |
179.6 |
180.0 |
H3A |
C3A |
C4A |
C5A |
180.7 |
180.0 |
O4A |
C4A |
C3A |
H3A |
0.2 |
0.1 |
C3A |
C4A |
O4A |
C5A |
180.5 |
180.0 |
O4A |
C4A |
C5A |
C6A |
180.1 |
179.8 |
O4A |
C4A |
C5A |
H5A |
0.1 |
360.0 |
C1A |
C6A |
C5A |
C4A |
0.1 |
0.4 |
C5A |
C4A |
C3A |
H3A |
180.7 |
180.0 |
C6A |
C5A |
C4A |
H5A |
180.0 |
179.8 |
C4A |
C5A |
C6A |
CL6 |
179.7 |
180.2 |
HO4A |
O4A |
C4A |
C5A |
359.5 |
270.0 |
C1A |
C6A |
C5A |
CL6 |
180.3 |
180.2 |
C4A |
C5A |
C6A |
H5A |
180.0 |
180.2 |
C4A |
C5A |
H5A |
C6A |
180.0 |
179.8 |
H5A |
C5A |
C6A |
CL6 |
359.7 |
0.0 |
C1A |
C6A |
CL6 |
C5A |
179.7 |
179.8 |
CL6 |
C6A |
C5A |
H5A |
359.7 |
0.0 |
O5 |
C1 |
C2 |
H1 |
123.4 |
120.0 |
C2 |
C1 |
O5 |
C5 |
292.1 |
298.9 |
C2 |
C1 |
O5 |
H1 |
243.1 |
240.0 |
C4 |
C5 |
O5 |
C1 |
62.8 |
61.1 |
C1 |
O5 |
C5 |
C6 |
187.8 |
181.1 |
C1 |
O5 |
C5 |
H5 |
306.0 |
301.1 |
C2 |
C1 |
H1 |
O5 |
118.1 |
119.9 |
H1 |
C1 |
O5 |
C5 |
49.0 |
58.8 |
C3 |
C2 |
C1 |
O5 |
61.6 |
57.6 |
C3 |
C2 |
C1 |
H1 |
298.2 |
297.7 |
O2 |
C2 |
C3 |
H2 |
118.8 |
120.2 |
O2 |
C2 |
C1 |
O5 |
183.8 |
177.6 |
O2 |
C2 |
C1 |
H1 |
60.4 |
57.6 |
C3 |
C2 |
O2 |
H2 |
241.1 |
239.8 |
H2 |
C2 |
C1 |
O5 |
302.6 |
297.7 |
H2 |
C2 |
C1 |
H1 |
179.3 |
177.7 |
HO2 |
O2 |
C2 |
H2 |
60.5 |
59.8 |
O3 |
C3 |
C2 |
H2 |
304.9 |
303.1 |
C4 |
C3 |
O3 |
H3 |
118.6 |
120.2 |
O3 |
C3 |
C4 |
C5 |
169.4 |
176.8 |
O3 |
C3 |
C4 |
H4 |
50.7 |
56.9 |
C4 |
C3 |
C2 |
H2 |
67.3 |
62.9 |
O3 |
C3 |
C4 |
H3 |
240.8 |
239.7 |
O4 |
C4 |
C3 |
C5 |
120.9 |
119.9 |
O4 |
C4 |
C3 |
H4 |
239.6 |
239.8 |
C5 |
C4 |
C3 |
H4 |
118.7 |
119.9 |
C3 |
C4 |
C5 |
C6 |
186.5 |
182.4 |
C3 |
C4 |
C5 |
O5 |
308.8 |
302.4 |
C3 |
C4 |
C5 |
H5 |
68.6 |
62.4 |
H3 |
C3 |
C2 |
H2 |
185.8 |
182.8 |
O3 |
C3 |
H3 |
C4 |
119.5 |
120.3 |
H3 |
C3 |
C4 |
C5 |
288.6 |
297.2 |
H3 |
C3 |
C4 |
H4 |
169.9 |
177.3 |
HO3 |
O3 |
C3 |
C4 |
56.7 |
60.4 |
HO3 |
O3 |
C3 |
H3 |
298.1 |
300.2 |
O4 |
C4 |
C3 |
H3 |
49.5 |
57.0 |
C3 |
C4 |
O4 |
C5 |
237.6 |
240.3 |
C3 |
C4 |
O4 |
H4 |
118.9 |
120.2 |
C5 |
C4 |
O4 |
H4 |
241.2 |
239.9 |
O4 |
C4 |
C5 |
C6 |
65.7 |
62.5 |
O4 |
C4 |
C5 |
O5 |
188.0 |
182.5 |
O4 |
C4 |
C5 |
H5 |
307.8 |
302.5 |
C1 |
O5 |
C5 |
C4 |
62.8 |
61.1 |
C5 |
C4 |
C3 |
H3 |
288.6 |
297.2 |
C3 |
C4 |
C5 |
H4 |
241.2 |
240.1 |
O4 |
C4 |
C5 |
H4 |
120.4 |
120.2 |
O5 |
C5 |
C4 |
C6 |
122.4 |
120.0 |
C6 |
C5 |
C4 |
H5 |
117.9 |
120.0 |
C4 |
C5 |
C6 |
H61 |
173.9 |
305.0 |
C4 |
C5 |
C6 |
H62 |
293.9 |
65.0 |
O5 |
C5 |
C4 |
H5 |
240.3 |
240.0 |
H4 |
C4 |
C3 |
H3 |
169.9 |
177.3 |
C3 |
C4 |
H4 |
C5 |
121.0 |
119.7 |
O4 |
C4 |
H4 |
C5 |
240.5 |
239.9 |
H4 |
C4 |
C5 |
C6 |
305.3 |
302.3 |
H4 |
C4 |
C5 |
O5 |
67.6 |
62.3 |
H4 |
C4 |
C5 |
H5 |
187.4 |
182.3 |
HO4 |
O4 |
C4 |
C5 |
302.4 |
179.7 |
HO4 |
O4 |
C4 |
H4 |
61.1 |
299.8 |
C6 |
C5 |
C4 |
H4 |
305.3 |
302.3 |
C4 |
C5 |
C6 |
O5 |
123.5 |
120.0 |
C4 |
C5 |
C6 |
H5 |
243.4 |
240.0 |
O5 |
C5 |
C6 |
H5 |
119.9 |
120.0 |
O6 |
C6 |
C5 |
H61 |
240.0 |
240.0 |
O6 |
C6 |
C5 |
H62 |
120.0 |
120.0 |
H61 |
C6 |
C5 |
H62 |
240.0 |
240.0 |
C5 |
O5 |
C1 |
H1 |
49.0 |
58.8 |
O5 |
C5 |
C4 |
H4 |
67.6 |
62.3 |
C4 |
C5 |
O5 |
C6 |
235.0 |
240.0 |
C4 |
C5 |
O5 |
H5 |
116.8 |
120.0 |
C6 |
C5 |
O5 |
H5 |
241.8 |
240.0 |
O5 |
C5 |
C6 |
H61 |
50.4 |
185.0 |
O5 |
C5 |
C6 |
H62 |
170.4 |
305.1 |
H5 |
C5 |
C4 |
H4 |
187.4 |
182.3 |
C4 |
C5 |
H5 |
C6 |
121.5 |
120.0 |
C4 |
C5 |
H5 |
O5 |
240.1 |
240.1 |
O5 |
C5 |
H5 |
C6 |
241.3 |
240.0 |
H5 |
C5 |
C6 |
H61 |
290.5 |
65.0 |
H5 |
C5 |
C6 |
H62 |
50.5 |
185.1 |
O6 |
C6 |
C5 |
H5 |
170.5 |
305.0 |
C5 |
C6 |
O6 |
H61 |
120.0 |
120.0 |
C5 |
C6 |
O6 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
O6 |
H62 |
120.0 |
120.0 |
H61 |
C6 |
C5 |
H5 |
290.5 |
65.0 |
C5 |
C6 |
H61 |
H62 |
119.6 |
120.0 |
O6 |
C6 |
H61 |
H62 |
240.3 |
240.0 |
H62 |
C6 |
C5 |
H5 |
50.5 |
185.1 |
C5 |
C6 |
H62 |
H61 |
240.3 |
240.0 |
O6 |
C6 |
H62 |
H61 |
119.7 |
120.0 |
HO6 |
O6 |
C6 |
H61 |
60.0 |
60.0 |
HO6 |
O6 |
C6 |
H62 |
300.0 |
300.0 |