PDB Chemical Component Z04

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Z04

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C11 1.307 1.389
N01 C16 1.500 1.464
N01 HN01 1.000 0.970
N02 C15 1.371 1.349
N02 HN02 1.000 0.970
N02 HN0A 1.000 0.970
N03 C18 1.361 1.323
N03 C19 1.360 1.325
N04 C19 1.365 1.324
N04 C20 1.368 1.323
N05 C13 1.319 1.390
N05 C21 1.504 1.470
N05 C23 1.511 1.471
N06 C19 1.275 1.384
N06 HN06 1.000 0.969
N06 HN0B 1.000 0.970
N07 C14 1.303 1.480
N07 O27 1.305 1.219
N07 O28 1.330 1.218
C08 C09 1.421 1.398
C08 C14 1.438 1.365
C08 H08 1.081 1.081
C09 C11 1.439 1.406
C09 C15 1.400 1.471
C11 C12 1.436 1.386
C12 C13 1.425 1.389
C12 H12 1.080 1.080
C13 C14 1.473 1.394
C15 O25 1.214 1.216
C16 C17 1.513 1.507
C16 H16 1.100 1.090
C16 H16A 1.100 1.091
C17 C18 1.400 1.386
C17 C20 1.400 1.387
C18 H18 1.080 1.080
C20 H20 1.080 1.080
C21 C22 1.536 1.531
C21 H21 1.101 1.090
C21 H21A 1.101 1.090
C22 O26 1.418 1.430
C22 H22 1.100 1.090
C22 H22A 1.100 1.090
C23 C24 1.534 1.530
C23 H23 1.100 1.090
C23 H23A 1.100 1.090
C24 O26 1.412 1.430
C24 H24 1.100 1.090
C24 H24A 1.100 1.090

Bond Angles for Z04

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C11 N01 C16 125.0 120.0
C11 N01 HN01 104.6 120.0
N01 C11 C09 120.0 120.2
N01 C11 C12 121.1 120.2
C16 N01 HN01 104.6 120.0
N01 C16 C17 109.5 109.5
N01 C16 H16 109.5 109.5
N01 C16 H16A 109.5 109.5
C15 N02 HN02 120.0 120.0
C15 N02 HN0A 120.0 120.0
N02 C15 C09 120.4 120.0
N02 C15 O25 118.4 120.0
HN02 N02 HN0A 120.0 120.0
C18 N03 C19 116.2 120.7
N03 C18 C17 123.8 119.2
N03 C18 H18 118.1 120.4
N03 C19 N04 125.4 121.6
N03 C19 N06 117.2 119.2
C19 N04 C20 115.9 120.7
N04 C19 N06 117.4 119.2
N04 C20 C17 123.6 119.2
N04 C20 H20 118.2 120.4
C13 N05 C21 119.2 111.0
C13 N05 C23 120.3 111.0
N05 C13 C12 117.2 119.9
N05 C13 C14 124.8 119.8
C21 N05 C23 120.5 110.7
N05 C21 C22 112.9 109.3
N05 C21 H21 108.3 109.5
N05 C21 H21A 108.3 109.5
N05 C23 C24 112.8 109.3
N05 C23 H23 108.4 109.5
N05 C23 H23A 108.4 109.5
C19 N06 HN06 109.5 120.0
C19 N06 HN0B 109.5 120.0
HN06 N06 HN0B 109.4 120.0
C14 N07 O27 122.0 120.0
C14 N07 O28 120.5 120.0
N07 C14 C08 117.4 119.8
N07 C14 C13 124.3 119.8
O27 N07 O28 117.5 120.0
C09 C08 C14 122.8 120.1
C09 C08 H08 118.6 120.0
C08 C09 C11 119.1 119.7
C08 C09 C15 118.8 120.2
C14 C08 H08 118.6 119.9
C08 C14 C13 118.3 120.4
C11 C09 C15 122.1 120.1
C09 C11 C12 118.9 119.6
C09 C15 O25 121.1 120.0
C11 C12 C13 122.9 119.9
C11 C12 H12 118.5 120.1
C13 C12 H12 118.6 120.1
C12 C13 C14 118.1 120.3
C17 C16 H16 109.5 109.4
C17 C16 H16A 109.5 109.4
C16 C17 C18 122.4 120.7
C16 C17 C20 122.5 120.7
H16 C16 H16A 109.5 109.5
C18 C17 C20 115.1 118.5
C17 C18 H18 118.1 120.4
C17 C20 H20 118.2 120.4
C22 C21 H21 108.3 109.5
C22 C21 H21A 108.4 109.5
C21 C22 O26 108.0 109.2
C21 C22 H22 109.9 109.5
C21 C22 H22A 109.9 109.5
H21 C21 H21A 110.6 109.5
O26 C22 H22 110.0 109.5
O26 C22 H22A 110.0 109.5
C22 O26 C24 108.7 113.8
H22 C22 H22A 109.0 109.6
C24 C23 H23 108.4 109.5
C24 C23 H23A 108.4 109.5
C23 C24 O26 107.8 109.3
C23 C24 H24 110.0 109.5
C23 C24 H24A 110.0 109.5
H23 C23 H23A 110.5 109.5
O26 C24 H24 110.0 109.5
O26 C24 H24A 110.0 109.5
H24 C24 H24A 108.9 109.5

Torsion Angles for Z04

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C16 N01 C11 HN01 240.0 180.3
C11 N01 C16 C17 82.8 180.0
C11 N01 C16 H16 202.8 300.0
C11 N01 C16 H16A 322.8 60.0
C08 C09 C11 N01 180.5 179.9
N01 C11 C09 C15 0.1 360.0
C09 C11 N01 C12 180.1 180.1
N01 C11 C12 C13 179.7 180.0
N01 C11 C12 H12 359.8 0.1
C11 N01 C16 HN01 120.0 179.7
C16 N01 C11 C09 164.3 174.4
C16 N01 C11 C12 344.1 354.3
C17 C16 N01 H16 240.0 240.0
C17 C16 N01 H16A 120.0 120.0
N01 C16 C17 C18 53.2 90.0
N01 C16 C17 C20 234.3 270.1
H16 C16 N01 H16A 240.0 240.0
C11 N01 HN01 C16 227.2 180.3
HN01 N01 C11 C09 284.2 354.1
HN01 N01 C11 C12 104.1 174.0
HN01 N01 C16 C17 322.8 0.3
HN01 N01 C16 H16 82.8 120.3
HN01 N01 C16 H16A 202.8 240.3
HN02 N02 C15 HN0A 180.0 180.0
C08 C09 C15 N02 24.1 5.9
C11 C09 C15 N02 204.6 185.8
C09 C15 N02 O25 180.6 180.0
C15 N02 HN02 HN0A 180.0 180.0
HN02 N02 C15 C09 180.6 0.0
HN02 N02 C15 O25 0.0 180.0
C15 N02 HN0A HN02 180.0 180.0
HN0A N02 C15 C09 0.6 180.1
HN0A N02 C15 O25 180.0 0.0
C18 N03 C19 N04 359.8 0.0
C18 N03 C19 N06 179.6 180.0
C16 C17 C18 N03 181.0 180.0
N03 C18 C17 C20 359.9 360.0
C17 C18 N03 H18 180.0 180.1
C19 N03 C18 C17 0.1 0.0
C19 N03 C18 H18 180.1 179.9
N03 C19 N04 C20 0.2 360.0
N04 C19 N03 N06 180.1 180.1
N03 C19 N06 HN06 0.0 0.1
N03 C19 N06 HN0B 120.0 180.0
N03 C19 N04 N06 179.9 179.9
C19 N04 C20 C17 359.9 360.0
C19 N04 C20 H20 179.9 180.0
N04 C19 N06 HN06 179.9 180.0
N04 C19 N06 HN0B 299.9 360.0
C20 N04 C19 N06 180.4 180.0
C16 C17 C20 N04 179.0 180.0
C18 C17 C20 N04 0.0 0.0
C17 C20 N04 H20 180.0 180.0
C21 N05 C13 C23 176.5 123.6
C13 N05 C21 C22 199.1 177.6
C13 N05 C21 H21 319.1 297.6
C13 N05 C21 H21A 79.1 57.7
C13 N05 C23 C24 160.4 182.4
C13 N05 C23 H23 280.3 302.3
C13 N05 C23 H23A 40.4 62.4
N07 C14 C13 N05 0.8 0.1
C08 C14 C13 N05 180.6 180.1
C11 C12 C13 N05 179.8 180.0
N05 C13 C12 H12 359.7 359.9
C12 C13 N05 C14 180.0 180.1
C13 N05 C21 C23 183.5 236.2
C21 N05 C13 C12 53.6 60.0
C21 N05 C13 C14 233.6 239.9
C21 N05 C23 C24 343.9 58.6
C21 N05 C23 H23 103.8 178.6
C21 N05 C23 H23A 223.9 298.6
C22 C21 N05 H21 240.0 240.0
C22 C21 N05 H21A 120.0 119.9
N05 C21 C22 O26 318.3 56.9
N05 C21 C22 H22 78.3 176.8
N05 C21 C22 H22A 198.3 296.9
H21 C21 N05 H21A 240.0 239.9
C13 N05 C23 C21 176.5 123.8
C23 N05 C13 C12 237.1 296.4
C23 N05 C13 C14 57.1 116.3
C23 N05 C21 C22 15.6 301.4
C23 N05 C21 H21 135.6 61.4
C23 N05 C21 H21A 255.6 181.5
C24 C23 N05 H23 240.0 240.0
C24 C23 N05 H23A 120.0 119.9
N05 C23 C24 O26 42.8 303.2
N05 C23 C24 H24 162.8 63.1
N05 C23 C24 H24A 282.8 183.2
H23 C23 N05 H23A 240.0 239.9
N03 C19 N06 N04 180.1 180.1
N06 C19 N04 C20 180.4 180.0
HN06 N06 C19 HN0B 240.0 180.1
C19 N06 HN06 HN0B 120.0 179.9
C19 N06 HN0B HN06 240.0 180.1
N05 C13 C14 N07 0.8 0.1
O27 N07 C14 O28 182.5 180.0
C09 C08 C14 N07 179.4 180.0
N07 C14 C08 H08 359.4 0.3
C08 C14 N07 C13 180.2 180.0
C12 C13 C14 N07 180.9 180.0
C14 N07 O27 O28 177.6 180.0
O27 N07 C14 C08 197.9 360.0
O27 N07 C14 C13 17.7 180.0
C14 N07 O28 O27 182.4 180.0
O28 N07 C14 C08 15.4 180.0
O28 N07 C14 C13 195.2 0.0
N01 C11 C09 C08 180.5 179.9
N02 C15 C09 C08 24.1 5.9
N07 C14 C08 C09 179.4 180.0
C14 C08 C09 H08 180.0 180.3
C09 C08 C14 C13 359.6 360.0
C11 C09 C08 C15 179.6 180.0
C08 C09 C11 C12 0.6 0.0
C08 C09 C15 O25 204.8 185.9
N05 C13 C14 C08 180.6 180.1
C08 C14 N07 O27 197.9 360.0
C08 C14 N07 O28 15.4 180.0
N07 C14 C08 C13 179.8 180.0
C09 C08 C14 H08 180.0 179.7
C14 C08 C09 C11 359.8 0.0
C14 C08 C09 C15 180.2 180.0
C12 C13 C14 C08 0.6 360.0
C09 C08 H08 C14 180.0 180.3
H08 C08 C09 C11 179.7 179.7
H08 C08 C09 C15 0.2 359.7
H08 C08 C14 C13 179.6 180.3
C09 C11 N01 C16 164.3 174.4
C09 C11 N01 HN01 284.2 354.1
N01 C11 C09 C12 179.9 179.9
N02 C15 C09 C11 204.6 185.8
C11 C09 C08 C14 359.8 0.0
C11 C09 C08 H08 179.7 179.7
C08 C09 C11 C15 180.4 180.0
C11 C09 C15 O25 25.2 5.9
C09 C11 C12 C13 359.6 359.9
C09 C11 C12 H12 179.7 180.0
C09 C15 N02 HN02 180.6 0.0
C09 C15 N02 HN0A 0.6 180.1
N02 C15 C09 O25 179.4 180.0
C15 C09 C08 C14 180.2 180.0
C15 C09 C08 H08 0.2 359.7
C08 C09 C15 C11 179.6 180.0
C15 C09 C11 C12 180.2 180.1
C12 C11 N01 C16 344.1 354.3
C12 C11 N01 HN01 104.1 174.0
N01 C11 C12 C09 180.1 180.1
N05 C13 C12 C11 179.8 180.0
C12 C11 C09 C15 180.2 180.1
C13 C12 C11 H12 180.0 179.9
C11 C12 C13 C14 359.7 0.1
C12 C13 N05 C21 53.6 60.0
C12 C13 N05 C23 237.1 296.4
N05 C13 C12 C14 180.0 179.9
N07 C14 C13 C12 180.9 180.0
C08 C14 C13 C12 0.6 360.0
C11 C12 C13 H12 180.0 180.1
C11 C12 H12 C13 180.0 179.9
H12 C12 C13 C14 179.7 180.0
C14 C13 N05 C21 233.6 239.9
C14 C13 N05 C23 57.1 116.3
N05 C13 C14 C12 180.0 180.1
C13 C14 N07 O27 17.7 180.0
C13 C14 N07 O28 195.2 0.0
N07 C14 C13 C08 180.2 180.0
C13 C14 C08 H08 179.6 180.3
C14 C13 C12 H12 179.7 180.0
O25 C15 N02 HN02 0.0 180.0
O25 C15 N02 HN0A 180.0 0.0
N02 C15 O25 C09 180.6 180.0
C17 C16 N01 HN01 322.8 0.3
N01 C16 C17 H16 120.0 120.0
N01 C16 C17 H16A 240.0 240.0
N03 C18 C17 C16 181.0 180.0
N04 C20 C17 C16 179.0 180.0
H16 C16 C17 H16A 120.0 120.0
C18 C17 C16 C20 178.9 179.9
C16 C17 C18 H18 1.0 0.1
C16 C17 C20 H20 359.0 360.0
H16 C16 N01 HN01 82.8 120.3
N01 C16 H16 C17 240.0 240.0
N01 C16 H16 H16A 120.0 120.0
C17 C16 H16 H16A 240.0 240.1
H16 C16 C17 C18 293.2 329.9
H16 C16 C17 C20 114.3 150.0
H16A C16 N01 HN01 202.8 240.3
N01 C16 H16A C17 120.0 120.0
N01 C16 H16A H16 240.0 240.0
C17 C16 H16A H16 120.0 119.9
H16A C16 C17 C18 173.2 210.0
H16A C16 C17 C20 354.3 30.1
C17 C18 N03 C19 0.1 0.0
N03 C18 C17 H18 180.0 179.9
N04 C20 C17 C18 0.0 0.0
C18 C17 C16 H16 293.2 329.9
C18 C17 C16 H16A 173.2 210.0
C16 C17 C18 C20 181.0 180.1
C18 C17 C20 H20 180.0 180.0
N04 C20 C17 H20 180.0 180.0
C20 C17 C16 H16 114.3 150.0
C20 C17 C16 H16A 354.3 30.1
C16 C17 C20 C18 179.0 179.9
C20 C17 C18 H18 180.0 180.0
H18 C18 N03 C19 180.1 179.9
N03 C18 H18 C17 180.0 180.1
H18 C18 C17 C20 180.0 180.0
N04 C20 H20 C17 180.0 180.0
C22 C21 N05 C23 15.6 301.4
N05 C21 C22 H21 120.0 120.0
N05 C21 C22 H21A 240.0 240.1
H21 C21 C22 H21A 120.0 120.1
O26 C22 C21 H22 240.0 240.1
O26 C22 C21 H22A 120.0 119.9
C21 C22 O26 C24 74.4 301.3
H22 C22 C21 H22A 240.0 239.8
H21 C21 N05 C23 135.6 61.4
N05 C21 H21 C22 237.2 240.2
N05 C21 H21 H21A 118.6 120.1
C22 C21 H21 H21A 241.4 239.9
H21 C21 C22 O26 198.3 296.9
H21 C21 C22 H22 318.3 56.8
H21 C21 C22 H22A 78.3 177.0
H21A C21 N05 C23 255.6 181.5
N05 C21 H21A C22 122.8 119.8
N05 C21 H21A H21 241.4 239.9
C22 C21 H21A H21 118.6 120.1
H21A C21 C22 O26 78.3 176.8
H21A C21 C22 H22 198.3 296.7
H21A C21 C22 H22A 318.3 56.9
O26 C22 C21 H21 198.3 296.9
O26 C22 C21 H21A 78.3 176.8
C21 C22 O26 H22 120.0 119.9
C21 C22 O26 H22A 240.0 240.1
H22 C22 O26 H22A 120.0 120.2
C23 C24 O26 C22 285.1 58.7
C22 O26 C24 H24 165.0 298.8
C22 O26 C24 H24A 45.1 178.7
H22 C22 C21 H21 318.3 56.8
H22 C22 C21 H21A 198.3 296.7
C21 C22 H22 O26 241.2 240.3
C21 C22 H22 H22A 120.6 120.1
O26 C22 H22 H22A 239.4 239.8
H22 C22 O26 C24 314.4 181.4
H22A C22 C21 H21 78.3 177.0
H22A C22 C21 H21A 318.3 56.9
C21 C22 H22A O26 118.8 119.7
C21 C22 H22A H22 239.4 239.9
O26 C22 H22A H22 120.6 120.2
H22A C22 O26 C24 194.4 61.2
N05 C23 C24 H23 120.0 120.0
N05 C23 C24 H23A 240.0 240.1
C22 O26 C24 C23 285.1 58.7
H23 C23 C24 H23A 120.0 120.1
O26 C24 C23 H24 240.0 240.1
O26 C24 C23 H24A 120.0 120.0
H24 C24 C23 H24A 240.0 239.9
N05 C23 H23 C24 237.3 240.2
N05 C23 H23 H23A 118.7 120.1
C24 C23 H23 H23A 241.4 239.9
H23 C23 C24 O26 282.8 183.2
H23 C23 C24 H24 42.8 303.1
H23 C23 C24 H24A 162.8 63.3
N05 C23 H23A C24 122.7 119.8
N05 C23 H23A H23 241.3 239.9
C24 C23 H23A H23 118.6 120.1
H23A C23 C24 O26 162.8 63.1
H23A C23 C24 H24 282.9 183.0
H23A C23 C24 H24A 42.8 303.2
C24 O26 C22 H22 314.4 181.4
C24 O26 C22 H22A 194.4 61.2
O26 C24 C23 H23 282.8 183.2
O26 C24 C23 H23A 162.8 63.1
C23 C24 O26 H24 120.0 119.9
C23 C24 O26 H24A 240.0 240.0
H24 C24 O26 H24A 120.0 120.1
H24 C24 C23 H23 42.8 303.1
H24 C24 C23 H23A 282.9 183.0
C23 C24 H24 O26 241.3 240.2
C23 C24 H24 H24A 120.7 120.1
O26 C24 H24 H24A 239.3 239.9
H24A C24 C23 H23 162.8 63.3
H24A C24 C23 H23A 42.8 303.2
C23 C24 H24A O26 118.6 119.8
C23 C24 H24A H24 239.3 239.9
O26 C24 H24A H24 120.7 120.1