Atom Nomenclature for YUN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for YUN

Atom Name (V3) Atom Name (V2)
CAL CAL
CAX CAX
BR BR
CAH CAH
CAF CAF
CAI CAI
CAY CAY
NAT NAT
C6 C6
C5 C5
CAM CAM
N1 N1
C2 C2
N3 N3
C4 C4
CAK CAK
CAJ CAJ
CAZ CAZ
NAS NAS
CAW CAW
OAC OAC
CAO CAO
CAN CAN
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15