PDB Chemical Component YTB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YTB

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O6	C5	1.437	1.429
O6	HO6	0.950	0.967
C4	C5	1.512	1.542
C5	C1	1.521	1.539
C5	H5	1.100	1.090
O4	C4	1.434	1.429
C4	C3	1.527	1.548
C4	H4	1.100	1.091
O4	HO4	0.950	0.967
O3	C3	1.437	1.429
C3	C2	1.543	1.549
C3	H3	1.100	1.091
O3	HO3	0.950	0.966
C1	C2	1.533	1.542
C1	N1	1.464	1.469
C1	H1	1.100	1.090
N1	HN1	1.000	1.009
N1	HN1A	0.999	1.009
C2	O2	1.444	1.429
C2	H2	1.100	1.090
O2	HO2	0.950	0.967

Bond Angles for YTB

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	O6	HO6	109.5	114.0
O6	C5	C1	115.1	110.1
O6	C5	H5	102.5	110.0
C4	C5	C1	100.5	106.5
C4	C5	H5	116.6	110.1
C1	C5	H5	112.2	110.0
C5	C1	C2	105.3	106.7
C5	C1	N1	112.7	110.0
C5	C1	H1	110.9	110.0
O4	C4	C3	114.6	110.5
O4	C4	H4	99.6	110.5
C3	C4	H4	113.2	110.5
C4	C3	C2	102.4	102.7
C4	C3	H3	114.3	110.8
O3	C3	C2	109.8	110.8
O3	C3	H3	107.4	110.8
C2	C3	H3	113.6	110.7
C3	C2	C1	105.6	104.2
C3	C2	O2	113.5	110.5
C3	C2	H2	110.4	110.4
N1	C1	C2	111.6	110.0
C2	C1	H1	112.0	110.0
C1	C2	O2	112.2	110.5
C1	C2	H2	111.8	110.5
N1	C1	H1	104.6	110.0
C1	N1	HN1	109.5	111.0
C1	N1	HN1A	109.5	111.0
HN1	N1	HN1A	109.5	111.0
O2	C2	H2	103.6	110.6
C2	O2	HO2	109.5	114.0

Torsion Angles for YTB

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C5	O6	C1	247.0	242.9
C4	C5	O6	H5	125.0	121.4
C1	C5	O6	H5	237.9	238.6
O6	C5	C1	C2	204.4	240.7
O6	C5	C1	N1	82.6	121.4
O6	C5	C1	H1	325.8	0.0
HO6	O6	C5	C1	359.7	180.0
HO6	O6	C5	H5	121.8	301.4
C4	C5	O6	HO6	246.8	62.9
O6	C5	C4	C1	122.0	119.3
O6	C5	C4	H5	243.5	238.6
C1	C5	C4	H5	121.5	119.3
C4	C5	C1	C2	323.2	0.0
C4	C5	C1	N1	201.3	240.7
C4	C5	C1	H1	84.5	119.3
C1	C5	O6	HO6	359.7	180.0
O6	C5	C1	H5	116.7	121.4
C4	C5	C1	H5	235.4	240.7
C3	C2	C1	C5	11.3	23.6
N1	C1	C5	C2	238.2	240.7
C2	C1	C5	H1	238.6	240.7
C5	C1	C2	O2	247.3	264.9
C5	C1	C2	H2	131.4	142.2
N1	C1	C5	H1	116.8	121.4
C5	C1	N1	HN1	14.2	180.1
C5	C1	N1	HN1A	134.2	304.0
H5	C5	O6	HO6	121.8	301.4
O6	C5	H5	C1	236.0	238.6
C4	C5	H5	C1	115.1	117.1
H5	C5	C1	C2	87.8	119.3
H5	C5	C1	N1	325.9	0.0
H5	C5	C1	H1	209.1	238.6
O4	C4	C5	C1	173.9	95.1
O4	C4	C5	H5	52.4	335.8
C3	C4	O4	H4	238.9	237.4
O4	C4	C3	C2	192.6	279.2
O4	C4	C3	H3	69.2	160.9
C3	C4	C5	C1	48.8	336.4
C3	C4	C5	H5	287.3	217.1
O4	C4	C3	H4	113.2	122.6
O3	C3	C4	C2	116.4	118.3
O3	C3	C4	H3	239.7	236.6
C2	C3	C4	H3	123.3	118.3
C4	C3	C2	C1	18.4	322.1
C4	C3	C2	O2	141.7	80.8
C4	C3	C2	H2	257.5	203.4
H4	C4	C5	C1	287.1	217.7
H4	C4	C5	H5	165.6	98.4
O4	C4	H4	C3	237.9	237.4
H4	C4	C3	C2	79.3	156.7
H4	C4	C3	H3	316.0	38.4
HO4	O4	C4	C3	267.0	294.8
HO4	O4	C4	H4	28.1	57.4
O3	C3	C4	H4	195.7	275.0
C4	C3	O3	C2	248.5	246.7
C4	C3	O3	H3	124.4	123.4
C2	C3	O3	H3	236.0	236.7
O3	C3	C2	C1	262.5	203.7
O3	C3	C2	O2	25.8	322.4
O3	C3	C2	H2	141.6	85.1
C5	C1	C2	C3	11.3	23.6
C2	C3	C4	H4	79.3	156.7
C4	C3	C2	H3	236.2	241.7
O3	C3	C2	H3	120.4	123.3
N1	C1	C2	C3	133.9	142.9
C3	C2	C1	H1	250.7	264.3
C1	C2	C3	O2	236.7	241.3
C1	C2	C3	H2	121.0	118.6
O2	C2	C3	H2	244.2	237.3
C3	C2	O2	HO2	316.0	61.4
H3	C3	C4	H4	316.0	38.4
C4	C3	H3	C2	117.1	113.3
O3	C3	H3	C2	238.3	236.7
H3	C3	C2	C1	142.2	80.4
H3	C3	C2	O2	265.4	199.1
H3	C3	C2	H2	21.2	321.8
HO3	O3	C3	C2	174.9	174.8
HO3	O3	C3	H3	299.0	298.1
C2	C1	C5	H5	87.8	119.3
C5	C1	C2	N1	237.5	240.7
C5	C1	C2	H1	120.6	119.3
C1	C2	C3	H3	142.2	80.4
C3	C2	C1	O2	124.1	118.7
C3	C2	C1	H2	239.9	241.4
N1	C1	C2	H1	243.2	238.6
C2	C1	N1	HN1	255.9	62.8
C2	C1	N1	HN1A	15.9	186.8
O2	C2	C1	H2	115.8	122.7
C1	C2	O2	HO2	75.6	176.2
N1	C1	C5	H5	325.9	0.0
C5	C1	N1	C2	118.2	117.2
C5	C1	N1	H1	239.5	238.6
C3	C2	C1	N1	133.9	142.9
C2	C1	N1	H1	121.3	121.4
N1	C1	C2	O2	9.8	24.2
N1	C1	C2	H2	254.0	261.5
HN1	N1	C1	HN1A	240.0	236.1
H1	C1	C5	H5	209.1	238.6
C5	C1	H1	C2	242.6	242.8
C5	C1	H1	N1	121.7	121.4
N1	C1	H1	C2	121.0	121.4
H1	C1	C2	O2	126.6	145.6
H1	C1	C2	H2	10.8	22.9
H1	C1	N1	HN1	134.7	301.4
H1	C1	N1	HN1A	254.7	65.4
HN1	N1	C1	C2	255.9	62.8
HN1	N1	C1	H1	134.7	301.4
C1	N1	HN1	HN1A	120.0	123.9
HN1A	N1	C1	C2	15.9	186.8
HN1A	N1	C1	H1	254.7	65.4
C1	N1	HN1A	HN1	240.0	236.1
O2	C2	C3	H3	265.4	199.1
C3	C2	O2	C1	240.5	245.2
C3	C2	O2	H2	119.8	122.6
O2	C2	C1	H1	126.6	145.6
C1	C2	O2	H2	239.3	237.3
H2	C2	C3	H3	21.2	321.8
C3	C2	H2	C1	117.2	114.7
C3	C2	H2	O2	238.2	237.4
H2	C2	C1	H1	10.8	22.9
C1	C2	H2	O2	121.0	122.7
H2	C2	O2	HO2	196.3	298.9
HO2	O2	C2	H2	196.3	298.9