PDB Chemical Component YSO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YSO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAK |
NAA |
1.139 |
1.135 |
| CAK |
CAC |
1.438 |
1.433 |
| CAC |
CAB |
1.395 |
1.391 |
| CAC |
C5 |
1.413 |
1.411 |
| CAB |
CAD |
1.382 |
1.385 |
| CAD |
CAL |
1.387 |
1.378 |
| CAL |
CAH |
1.394 |
1.393 |
| CAH |
NAM |
1.353 |
1.371 |
| CAH |
C5 |
1.410 |
1.407 |
| NAM |
NAJ |
1.362 |
1.399 |
| NAJ |
CAE |
1.355 |
1.308 |
| CAE |
NAI |
1.341 |
1.399 |
| CAE |
C5 |
1.446 |
1.460 |
| CAB |
HAB |
1.080 |
1.080 |
| CAD |
HAD |
1.080 |
1.080 |
| CAL |
HAL |
1.080 |
1.079 |
| NAM |
HAM |
1.000 |
0.970 |
| NAI |
HAI1 |
1.000 |
0.969 |
| NAI |
HAI2 |
1.000 |
0.970 |
Bond Angles for YSO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAA |
CAK |
CAC |
177.5 |
179.9 |
| CAK |
CAC |
CAB |
118.8 |
120.3 |
| CAK |
CAC |
C5 |
120.6 |
120.3 |
| CAB |
CAC |
C5 |
120.5 |
119.4 |
| CAC |
CAB |
CAD |
120.5 |
120.3 |
| CAC |
CAB |
HAB |
119.8 |
119.8 |
| CAC |
C5 |
CAH |
117.5 |
119.7 |
| CAC |
C5 |
CAE |
137.0 |
133.9 |
| CAB |
CAD |
CAL |
120.4 |
120.8 |
| CAD |
CAB |
HAB |
119.7 |
119.9 |
| CAB |
CAD |
HAD |
119.8 |
119.5 |
| CAD |
CAL |
CAH |
119.6 |
120.2 |
| CAL |
CAD |
HAD |
119.8 |
119.6 |
| CAD |
CAL |
HAL |
120.2 |
119.9 |
| CAL |
CAH |
NAM |
131.6 |
133.6 |
| CAL |
CAH |
C5 |
121.5 |
119.6 |
| CAH |
CAL |
HAL |
120.2 |
119.9 |
| NAM |
CAH |
C5 |
106.9 |
106.8 |
| CAH |
NAM |
NAJ |
111.8 |
109.2 |
| CAH |
NAM |
HAM |
124.1 |
125.5 |
| CAH |
C5 |
CAE |
105.4 |
106.4 |
| NAM |
NAJ |
CAE |
107.5 |
109.9 |
| NAJ |
NAM |
HAM |
124.1 |
125.3 |
| NAJ |
CAE |
NAI |
122.3 |
126.2 |
| NAJ |
CAE |
C5 |
108.3 |
107.7 |
| C5 |
CAE |
NAI |
129.4 |
126.1 |
| CAE |
NAI |
HAI1 |
109.5 |
120.0 |
| CAE |
NAI |
HAI2 |
109.4 |
120.0 |
| HAI1 |
NAI |
HAI2 |
109.5 |
120.1 |
Torsion Angles for YSO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAA |
CAK |
CAC |
CAB |
338.2 |
360.0 |
| NAA |
CAK |
CAC |
C5 |
155.4 |
179.7 |
| CAB |
CAC |
CAK |
C5 |
182.8 |
180.2 |
| CAK |
CAC |
CAB |
CAD |
176.1 |
180.0 |
| CAK |
CAC |
CAB |
HAB |
356.1 |
360.0 |
| CAK |
CAC |
C5 |
CAH |
183.6 |
179.7 |
| CAK |
CAC |
C5 |
CAE |
1.4 |
0.7 |
| CAK |
CAC |
CAB |
C5 |
177.2 |
179.8 |
| CAB |
CAC |
C5 |
CAH |
0.7 |
359.5 |
| CAB |
CAC |
C5 |
CAE |
178.6 |
180.5 |
| CAC |
CAB |
CAD |
CAL |
1.2 |
360.0 |
| CAD |
CAB |
CAC |
HAB |
180.0 |
180.0 |
| CAC |
CAB |
CAD |
HAD |
181.1 |
180.0 |
| CAK |
CAC |
C5 |
CAB |
182.9 |
180.2 |
| C5 |
CAC |
CAB |
CAD |
359.0 |
0.2 |
| C5 |
CAC |
CAB |
HAB |
178.9 |
180.2 |
| CAL |
CAH |
C5 |
CAC |
359.5 |
0.6 |
| NAM |
CAH |
C5 |
CAC |
177.7 |
180.4 |
| CAH |
C5 |
CAC |
CAE |
182.1 |
179.0 |
| NAJ |
CAE |
C5 |
CAC |
182.3 |
179.5 |
| CAC |
C5 |
CAE |
NAI |
1.8 |
359.3 |
| CAD |
CAB |
CAC |
C5 |
359.0 |
0.2 |
| CAC |
CAB |
CAD |
HAB |
180.0 |
180.0 |
| CAB |
CAD |
CAL |
CAH |
359.0 |
0.0 |
| CAL |
CAD |
CAB |
HAD |
180.0 |
180.0 |
| CAB |
CAD |
CAL |
HAL |
179.0 |
180.0 |
| CAL |
CAD |
CAB |
HAB |
181.2 |
180.0 |
| CAB |
CAD |
CAL |
HAD |
180.0 |
180.0 |
| CAD |
CAL |
CAH |
NAM |
182.9 |
179.9 |
| CAD |
CAL |
CAH |
C5 |
0.6 |
359.7 |
| CAH |
CAL |
CAD |
HAL |
180.0 |
180.0 |
| CAC |
C5 |
CAH |
CAL |
359.5 |
0.6 |
| CAH |
CAL |
CAD |
HAD |
179.1 |
180.0 |
| CAD |
CAL |
CAH |
HAL |
180.0 |
180.0 |
| NAM |
CAH |
CAL |
C5 |
182.3 |
180.2 |
| CAL |
CAH |
NAM |
NAJ |
178.9 |
180.0 |
| CAL |
CAH |
NAM |
HAM |
358.9 |
0.1 |
| CAL |
CAH |
C5 |
CAE |
181.0 |
179.8 |
| CAC |
C5 |
CAH |
NAM |
177.7 |
180.4 |
| CAL |
CAH |
NAM |
C5 |
178.0 |
179.8 |
| NAM |
CAH |
CAL |
HAL |
2.9 |
359.9 |
| NAM |
CAH |
C5 |
CAE |
359.2 |
359.7 |
| CAH |
NAM |
NAJ |
CAE |
359.3 |
360.0 |
| NAJ |
NAM |
CAH |
HAM |
180.0 |
180.0 |
| CAC |
C5 |
CAH |
CAE |
178.5 |
180.7 |
| CAL |
CAH |
C5 |
NAM |
181.8 |
180.2 |
| C5 |
CAH |
CAL |
HAL |
180.6 |
179.7 |
| C5 |
CAH |
NAM |
NAJ |
1.0 |
0.2 |
| C5 |
CAH |
NAM |
HAM |
181.0 |
180.3 |
| NAJ |
CAE |
C5 |
CAH |
0.4 |
0.4 |
| CAH |
C5 |
CAE |
NAI |
179.9 |
180.2 |
| NAJ |
NAM |
CAH |
C5 |
1.0 |
0.2 |
| CAH |
NAM |
NAJ |
HAM |
180.0 |
180.0 |
| NAM |
NAJ |
CAE |
NAI |
180.7 |
179.9 |
| NAM |
NAJ |
CAE |
C5 |
0.2 |
359.8 |
| CAC |
C5 |
CAE |
NAJ |
182.3 |
179.5 |
| CAH |
C5 |
CAE |
NAJ |
0.4 |
0.4 |
| CAE |
NAJ |
NAM |
HAM |
179.3 |
180.0 |
| C5 |
CAE |
NAJ |
NAI |
179.5 |
179.8 |
| NAJ |
CAE |
NAI |
HAI1 |
0.0 |
0.1 |
| NAJ |
CAE |
NAI |
HAI2 |
120.0 |
180.1 |
| NAJ |
CAE |
NAI |
C5 |
179.4 |
179.8 |
| HAI1 |
NAI |
CAE |
HAI2 |
240.0 |
180.0 |
| CAC |
C5 |
CAE |
CAH |
181.9 |
179.1 |
| NAJ |
CAE |
C5 |
NAI |
180.5 |
180.2 |
| C5 |
CAE |
NAI |
HAI1 |
180.6 |
180.3 |
| C5 |
CAE |
NAI |
HAI2 |
300.6 |
0.2 |
| HAB |
CAB |
CAC |
C5 |
178.9 |
180.2 |
| CAC |
CAB |
HAB |
CAD |
180.0 |
180.0 |
| HAB |
CAB |
CAD |
CAL |
181.2 |
180.0 |
| HAB |
CAB |
CAD |
HAD |
1.2 |
0.1 |
| CAB |
CAD |
HAD |
CAL |
180.0 |
180.0 |
| HAD |
CAD |
CAB |
HAB |
1.2 |
0.1 |
| HAD |
CAD |
CAL |
CAH |
179.1 |
180.0 |
| HAD |
CAD |
CAL |
HAL |
359.1 |
360.0 |
| CAD |
CAL |
HAL |
CAH |
180.0 |
180.0 |
| HAL |
CAL |
CAD |
HAD |
359.1 |
360.0 |
| HAL |
CAL |
CAH |
NAM |
2.9 |
359.9 |
| HAL |
CAL |
CAH |
C5 |
180.6 |
179.7 |
| HAM |
NAM |
CAH |
C5 |
181.0 |
180.3 |
| CAH |
NAM |
HAM |
NAJ |
180.0 |
179.9 |
| HAM |
NAM |
NAJ |
CAE |
179.3 |
180.0 |
| CAE |
NAI |
HAI1 |
HAI2 |
120.0 |
180.0 |
| CAE |
NAI |
HAI2 |
HAI1 |
240.0 |
180.0 |