PDB Chemical Component YOF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YOF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.455 |
1.469 |
| N |
H |
1.021 |
1.010 |
| N |
H2 |
1.019 |
1.009 |
| CA |
C |
1.533 |
1.507 |
| CA |
CB |
1.567 |
1.529 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.235 |
1.207 |
| C |
OXT |
1.354 |
1.343 |
| OXT |
HXT |
0.949 |
0.967 |
| CB |
CG |
1.531 |
1.505 |
| CB |
HB2 |
1.116 |
1.089 |
| CB |
HB3 |
1.114 |
1.090 |
| CG |
CD1 |
1.396 |
1.382 |
| CG |
CD2 |
1.398 |
1.384 |
| CD1 |
CE1 |
1.384 |
1.383 |
| CD1 |
HD1 |
1.103 |
1.079 |
| CD2 |
CE2 |
1.406 |
1.381 |
| CD2 |
HD2 |
1.103 |
1.080 |
| CE1 |
CZ |
1.406 |
1.387 |
| CE1 |
F |
1.338 |
1.351 |
| CE2 |
CZ |
1.395 |
1.387 |
| CE2 |
HE2 |
1.103 |
1.081 |
| CZ |
OH |
1.398 |
1.360 |
| OH |
HH |
0.950 |
0.966 |
Bond Angles for YOF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.4 |
106.7 |
| CA |
N |
H2 |
111.2 |
106.7 |
| N |
CA |
C |
112.4 |
109.4 |
| N |
CA |
CB |
113.9 |
109.4 |
| N |
CA |
HA |
103.7 |
109.5 |
| H |
N |
H2 |
111.2 |
106.7 |
| C |
CA |
CB |
107.8 |
109.5 |
| C |
CA |
HA |
110.3 |
109.5 |
| CA |
C |
O |
119.4 |
120.1 |
| CA |
C |
OXT |
113.8 |
120.0 |
| CB |
CA |
HA |
108.6 |
109.4 |
| CA |
CB |
CG |
110.0 |
109.5 |
| CA |
CB |
HB2 |
112.0 |
109.5 |
| CA |
CB |
HB3 |
112.1 |
109.4 |
| O |
C |
OXT |
126.8 |
120.0 |
| C |
OXT |
HXT |
113.8 |
120.0 |
| CG |
CB |
HB2 |
112.0 |
109.5 |
| CG |
CB |
HB3 |
112.0 |
109.5 |
| CB |
CG |
CD1 |
118.9 |
120.0 |
| CB |
CG |
CD2 |
124.1 |
119.9 |
| HB2 |
CB |
HB3 |
98.4 |
109.4 |
| CD1 |
CG |
CD2 |
117.0 |
120.1 |
| CG |
CD1 |
CE1 |
123.0 |
120.0 |
| CG |
CD1 |
HD1 |
119.0 |
119.9 |
| CG |
CD2 |
CE2 |
121.1 |
120.1 |
| CG |
CD2 |
HD2 |
119.2 |
119.9 |
| CE1 |
CD1 |
HD1 |
118.0 |
120.0 |
| CD1 |
CE1 |
CZ |
119.6 |
119.9 |
| CD1 |
CE1 |
F |
119.5 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.8 |
120.0 |
| CD2 |
CE2 |
CZ |
120.7 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.1 |
120.0 |
| CZ |
CE1 |
F |
120.9 |
120.0 |
| CE1 |
CZ |
CE2 |
118.6 |
119.9 |
| CE1 |
CZ |
OH |
121.7 |
120.1 |
| CZ |
CE2 |
HE2 |
119.3 |
120.0 |
| CE2 |
CZ |
OH |
119.7 |
120.0 |
| CZ |
OH |
HH |
121.7 |
106.8 |
Torsion Angles for YOF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.7 |
| C |
CA |
N |
CB |
123.0 |
120.0 |
| C |
CA |
N |
HA |
240.9 |
240.0 |
| N |
CA |
C |
O |
353.8 |
330.1 |
| N |
CA |
C |
OXT |
173.9 |
150.0 |
| CB |
CA |
N |
HA |
117.9 |
119.9 |
| N |
CA |
CB |
CG |
200.3 |
299.9 |
| N |
CA |
CB |
HB2 |
325.6 |
60.1 |
| N |
CA |
CB |
HB3 |
75.1 |
180.0 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
C |
180.0 |
173.8 |
| H |
N |
CA |
CB |
57.0 |
53.8 |
| H |
N |
CA |
HA |
299.2 |
293.8 |
| CA |
N |
H2 |
H |
126.0 |
113.7 |
| H2 |
N |
CA |
C |
54.7 |
60.0 |
| H2 |
N |
CA |
CB |
291.7 |
300.0 |
| H2 |
N |
CA |
HA |
173.9 |
180.1 |
| C |
CA |
N |
H |
180.0 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
C |
CB |
233.6 |
240.0 |
| N |
CA |
C |
HA |
115.2 |
120.0 |
| CB |
CA |
C |
HA |
241.5 |
240.0 |
| C |
CA |
CB |
CG |
74.8 |
180.0 |
| C |
CA |
CB |
HB2 |
200.1 |
300.1 |
| C |
CA |
CB |
HB3 |
309.6 |
60.0 |
| O |
C |
CA |
OXT |
179.9 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
H |
57.0 |
53.8 |
| CB |
CA |
N |
H2 |
291.7 |
300.0 |
| N |
CA |
CB |
C |
125.5 |
120.0 |
| N |
CA |
CB |
HA |
245.0 |
240.0 |
| C |
CA |
CB |
HA |
119.5 |
120.1 |
| CB |
CA |
C |
O |
120.2 |
90.0 |
| CB |
CA |
C |
OXT |
300.3 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
239.9 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
| CA |
CB |
CG |
CD1 |
24.5 |
269.8 |
| CA |
CB |
CG |
CD2 |
205.8 |
90.0 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| HA |
CA |
N |
H |
299.2 |
293.8 |
| HA |
CA |
N |
H2 |
173.9 |
180.1 |
| N |
CA |
HA |
C |
239.4 |
240.0 |
| N |
CA |
HA |
CB |
121.5 |
119.9 |
| C |
CA |
HA |
CB |
242.0 |
239.9 |
| HA |
CA |
C |
O |
238.7 |
210.1 |
| HA |
CA |
C |
OXT |
58.7 |
30.0 |
| HA |
CA |
CB |
CG |
315.3 |
59.9 |
| HA |
CA |
CB |
HB2 |
80.5 |
180.0 |
| HA |
CA |
CB |
HB3 |
190.0 |
299.9 |
| O |
C |
CA |
CB |
120.2 |
90.0 |
| O |
C |
CA |
HA |
238.7 |
210.1 |
| CA |
C |
O |
OXT |
180.1 |
179.9 |
| O |
C |
OXT |
HXT |
0.1 |
0.0 |
| OXT |
C |
CA |
CB |
300.3 |
270.0 |
| OXT |
C |
CA |
HA |
58.7 |
30.0 |
| CA |
C |
OXT |
O |
179.9 |
180.1 |
| CG |
CB |
CA |
HA |
315.3 |
59.9 |
| CA |
CB |
CG |
HB2 |
125.2 |
120.1 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
178.6 |
179.8 |
| CB |
CG |
CD1 |
CE1 |
180.8 |
179.8 |
| CB |
CG |
CD1 |
HD1 |
0.9 |
0.3 |
| CB |
CG |
CD2 |
CE2 |
179.6 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
359.6 |
360.0 |
| HB2 |
CB |
CA |
HA |
80.5 |
180.0 |
| CA |
CB |
HB2 |
CG |
235.9 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
118.0 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
242.1 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
259.3 |
149.7 |
| HB2 |
CB |
CG |
CD2 |
80.6 |
329.9 |
| HB3 |
CB |
CA |
HA |
190.0 |
299.9 |
| CA |
CB |
HB3 |
CG |
124.1 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
242.0 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
117.9 |
120.0 |
| HB3 |
CB |
CG |
CD1 |
149.8 |
29.7 |
| HB3 |
CB |
CG |
CD2 |
331.1 |
210.0 |
| CD1 |
CG |
CB |
HB2 |
259.3 |
149.7 |
| CD1 |
CG |
CB |
HB3 |
149.8 |
29.7 |
| CB |
CG |
CD1 |
CD2 |
181.3 |
180.2 |
| CD1 |
CG |
CD2 |
CE2 |
1.0 |
0.2 |
| CD1 |
CG |
CD2 |
HD2 |
180.9 |
180.2 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
179.5 |
| CG |
CD1 |
CE1 |
CZ |
359.2 |
0.5 |
| CG |
CD1 |
CE1 |
F |
181.5 |
180.2 |
| CD2 |
CG |
CB |
HB2 |
80.6 |
329.9 |
| CD2 |
CG |
CB |
HB3 |
331.1 |
210.0 |
| CB |
CG |
CD2 |
CD1 |
178.7 |
179.8 |
| CD2 |
CG |
CD1 |
CE1 |
359.6 |
359.6 |
| CD2 |
CG |
CD1 |
HD1 |
179.6 |
180.1 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
359.7 |
0.0 |
| CG |
CD2 |
CE2 |
HE2 |
179.6 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
359.6 |
359.6 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.5 |
| CZ |
CE1 |
CD1 |
F |
177.7 |
180.2 |
| CD1 |
CE1 |
CZ |
CE2 |
1.4 |
359.8 |
| CD1 |
CE1 |
CZ |
OH |
181.5 |
179.8 |
| HD1 |
CD1 |
CG |
CD2 |
179.6 |
180.1 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
179.5 |
| HD1 |
CD1 |
CE1 |
CZ |
179.2 |
180.0 |
| HD1 |
CD1 |
CE1 |
F |
1.4 |
359.7 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
359.1 |
0.0 |
| CZ |
CE2 |
CD2 |
HE2 |
180.1 |
180.0 |
| CD2 |
CE2 |
CZ |
OH |
179.1 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.0 |
| HD2 |
CD2 |
CE2 |
CZ |
179.7 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.7 |
360.0 |
| CZ |
CE1 |
CD1 |
HD1 |
179.2 |
180.0 |
| CD1 |
CE1 |
CZ |
F |
182.3 |
179.8 |
| CD2 |
CE2 |
CZ |
CE1 |
359.1 |
0.0 |
| CE1 |
CZ |
CE2 |
HE2 |
179.2 |
180.0 |
| CE2 |
CZ |
CE1 |
OH |
179.9 |
180.0 |
| CE1 |
CZ |
OH |
HH |
180.0 |
270.1 |
| F |
CE1 |
CD1 |
HD1 |
1.4 |
359.7 |
| CD1 |
CE1 |
F |
CZ |
177.7 |
180.2 |
| F |
CE1 |
CZ |
CE2 |
179.1 |
180.0 |
| F |
CE1 |
CZ |
OH |
359.2 |
360.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.7 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
179.9 |
180.0 |
| CE2 |
CZ |
CE1 |
F |
179.1 |
180.0 |
| CE1 |
CZ |
CE2 |
OH |
180.1 |
180.0 |
| CE2 |
CZ |
OH |
HH |
0.0 |
90.1 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.7 |
360.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.1 |
180.0 |
| HE2 |
CE2 |
CZ |
OH |
359.1 |
0.0 |
| OH |
CZ |
CE1 |
F |
359.2 |
360.0 |
| CE1 |
CZ |
OH |
CE2 |
179.9 |
180.0 |
| OH |
CZ |
CE2 |
HE2 |
359.1 |
0.0 |