PDB Chemical Component YNU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YNU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O24	C20	1.203	1.213
C20	C26	1.482	1.515
C20	C14	1.483	1.465
C26	C18	1.508	1.529
C14	C7	1.344	1.332
C18	C5	1.540	1.518
C7	C5	1.520	1.503
C7	C12	1.539	1.517
C5	C29	1.542	1.530
C5	C1	1.548	1.536
O22	C15	1.197	1.208
C12	C9	1.564	1.532
O2	C1	1.449	1.432
O2	C3	1.432	1.436
C1	C3	1.523	1.514
C1	C4	1.544	1.533
C15	C9	1.530	1.507
C15	O28	1.348	1.342
C9	C4	1.558	1.527
C3	C11	1.540	1.536
C30	O28	1.467	1.451
C4	C8	1.543	1.518
C11	C6	1.522	1.521
C8	C6	1.588	1.557
C8	C17	1.536	1.539
C6	C27	1.549	1.530
C6	C10	1.552	1.525
C17	C19	1.536	1.550
C10	C21	1.544	1.537
C10	C19	1.531	1.538
C10	O13	1.438	1.450
C21	C25	1.549	1.547
C25	C16	1.490	1.518
O13	C16	1.342	1.347
C16	O23	1.197	1.208
C3	H1	1.100	1.089
C8	H2	1.100	1.090
C9	H3	1.100	1.090
C11	H4	1.100	1.090
C11	H5	1.100	1.090
C12	H6	1.099	1.090
C12	H7	1.100	1.091
C14	H8	1.080	1.080
C19	H9	1.100	1.090
C19	H10	1.099	1.090
C21	H11	1.100	1.089
C21	H12	1.100	1.091
C27	H13	1.100	1.090
C27	H14	1.100	1.090
C27	H15	1.100	1.090
C30	H16	1.100	1.090
C30	H17	1.100	1.090
C30	H18	1.100	1.091
C4	H19	1.100	1.091
C17	H20	1.100	1.090
C17	H21	1.100	1.090
C18	H22	1.099	1.089
C18	H23	1.100	1.090
C25	H24	1.100	1.090
C25	H25	1.100	1.090
C26	H26	1.100	1.090
C26	H27	1.100	1.091
C29	H28	1.100	1.091
C29	H29	1.100	1.090
C29	H30	1.100	1.090

Bond Angles for YNU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O24	C20	C26	115.9	121.6
C20	C26	C18	107.3	107.5
C20	C26	H26	110.0	109.9
C20	C26	H27	110.0	109.9
C20	C14	H8	119.1	119.8
C26	C18	H22	108.8	109.2
C26	C18	H23	108.8	109.1
C14	C7	C5	119.9	123.1
C18	C5	C29	110.2	108.1
C12	C7	C5	121.1	118.9
C7	C5	C29	107.8	108.8
C7	C12	C9	111.1	109.8
C7	C12	H6	109.1	109.5
C7	C12	H7	109.1	109.4
C5	C29	H28	109.5	109.4
C5	C29	H29	109.5	109.5
C5	C29	H30	109.5	109.5
C12	C9	C4	111.2	108.7
C12	C9	H3	106.7	109.6
O2	C1	C4	115.1	117.5
O2	C3	H1	118.0	117.7
C3	C1	C4	120.4	120.3
C1	C3	C11	122.5	120.7
C1	C3	H1	116.2	117.6
C1	C4	C9	110.0	108.5
C1	C4	C8	110.9	108.5
C1	C4	H19	105.3	109.4
C15	C9	C4	113.5	109.6
C15	C9	H3	107.0	109.6
C4	C9	H3	106.8	109.6
C9	C4	H19	105.1	109.3
C3	C11	C6	112.1	108.9
C11	C3	H1	115.9	115.6
C3	C11	H4	108.8	109.6
C3	C11	H5	108.8	109.6
C4	C8	C6	116.9	106.4
C4	C8	C17	120.5	113.1
C4	C8	H2	104.7	111.9
C8	C6	C11	108.2	107.5
C11	C6	C27	108.5	110.3
C6	C11	H4	108.8	109.5
C6	C11	H5	108.8	109.6
C6	C8	C17	103.9	102.2
C8	C6	C27	113.2	110.4
C8	C6	C10	100.8	103.6
C6	C8	H2	104.3	111.4
C8	C17	C19	102.9	103.6
C17	C8	H2	104.8	111.3
C8	C17	H20	111.1	110.6
C8	C17	H21	111.1	110.6
C6	C27	H13	109.5	109.5
C6	C27	H14	109.5	109.5
C6	C27	H15	109.5	109.5
C6	C10	O13	112.7	111.5
C17	C19	H9	110.0	110.1
C17	C19	H10	110.0	110.1
C19	C10	C21	107.8	110.1
C21	C10	O13	103.3	107.1
C10	C21	C25	105.2	102.8
C10	C21	H11	110.5	110.8
C10	C21	H12	110.5	110.7
C19	C10	O13	108.7	110.6
C10	C19	H9	110.0	110.1
C10	C19	H10	110.0	110.1
C10	O13	C16	113.2	109.4
C25	C21	H11	110.5	110.8
C25	C21	H12	110.6	110.7
C21	C25	H24	110.9	110.6
C21	C25	H25	110.9	110.6
O13	C16	O23	125.8	126.4
H4	C11	H5	109.5	109.6
H6	C12	H7	109.4	109.3
H9	C19	H10	109.5	110.1
H11	C21	H12	109.4	110.8
H13	C27	H14	109.4	109.5
H13	C27	H15	109.5	109.4
H14	C27	H15	109.5	109.5
H16	C30	H17	109.4	109.5
H16	C30	H18	109.5	109.5
H17	C30	H18	109.5	109.5
H20	C17	H21	109.4	110.6
H22	C18	H23	109.4	109.1
H24	C25	H25	109.4	110.6
H26	C26	H27	109.5	109.9
H28	C29	H29	109.4	109.5
H28	C29	H30	109.4	109.5
H29	C29	H30	109.5	109.5

Torsion Angles for YNU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O24	C20	C26	C18	217.1	227.6
O24	C20	C26	H26	336.8	347.1
O24	C20	C26	H27	97.4	108.1
O24	C20	C14	H8	355.2	340.8
C26	C20	C14	H8	173.9	160.8
C20	C26	C18	H22	61.9	180.9
C20	C26	C18	H23	181.0	61.8
H26	C26	C20	H27	239.3	239.0
C20	C14	C7	C5	353.1	0.2
C20	C26	C18	H26	119.7	119.5
C20	C26	C18	H27	240.3	240.5
C26	C18	C5	C29	287.8	281.7
H22	C18	C26	H23	240.8	119.2
C12	C7	C14	C5	188.1	179.5
C14	C7	C5	C29	107.6	107.8
C14	C7	C12	H6	250.0	249.6
C14	C7	C12	H7	9.5	9.3
C20	C26	C18	C5	301.5	301.4
C7	C5	C18	C29	120.5	120.9
C18	C5	C29	H28	180.0	183.9
C18	C5	C29	H29	300.0	303.9
C18	C5	C29	H30	60.0	63.9
C18	C5	C7	C29	238.1	239.5
C5	C7	C12	C9	317.9	308.9
C5	C7	C12	H6	78.2	69.1
C5	C7	C12	H7	197.7	188.9
C7	C5	C29	H28	56.6	60.0
C7	C5	C29	H29	176.6	180.0
C7	C5	C29	H30	296.6	300.1
C14	C7	C12	C5	171.8	180.5
C12	C7	C5	C29	279.3	288.3
C7	C12	C9	C4	49.1	56.7
C7	C12	C9	H3	165.2	176.5
H6	C12	C7	H7	240.5	240.2
H28	C29	C5	H29	240.0	240.0
H28	C29	C5	H30	120.0	120.0
H29	C29	C5	H30	240.0	239.9
C5	C1	C3	H1	5.7	3.8
C5	C1	C4	H19	305.5	302.0
O22	C15	C9	H3	137.5	143.9
C9	C12	C7	C5	317.9	308.9
C7	C12	C9	H6	120.3	120.2
C7	C12	C9	H7	239.7	239.9
C1	C4	C9	C12	301.8	297.3
C15	C9	C12	C4	232.5	240.2
C15	C9	C12	H3	116.4	120.4
C4	C9	C12	H3	243.9	240.2
C12	C9	C4	H19	54.7	56.5
C3	C1	O2	C4	111.4	110.3
O2	C1	C3	H1	108.2	106.9
O2	C1	C4	C9	280.8	281.9
O2	C1	C4	C8	54.6	43.9
O2	C1	C4	H19	168.0	162.7
C3	O2	C1	C4	248.6	249.7
O2	C3	C1	C4	102.1	105.5
C1	C3	O2	H1	105.2	106.8
O2	C3	C11	C6	269.3	274.1
C11	C3	O2	H1	220.3	218.7
O2	C3	C11	H4	29.6	33.9
O2	C3	C11	H5	148.8	154.2
O2	C1	C3	C4	257.9	254.5
O2	C3	C1	H1	251.8	253.1
C3	C1	C4	C9	215.1	214.4
C3	C1	C4	C8	348.9	336.4
C3	C1	C4	H19	102.3	95.2
C1	C3	C11	C6	335.7	340.2
C11	C3	C1	H1	152.9	151.2
C1	C3	C11	H4	96.1	100.1
C1	C3	C11	H5	215.3	220.4
C12	C9	C4	C1	301.8	297.3
C4	C1	C3	C11	3.2	3.6
C4	C1	C3	H1	210.3	212.4
C15	C9	C4	C1	68.0	57.2
C1	C4	C9	H3	185.7	177.5
C9	C4	C1	H19	112.8	119.2
C1	C4	C8	C6	41.5	59.1
C1	C4	C8	C17	169.1	170.5
C1	C4	C8	H2	286.6	297.1
C12	C9	C15	C4	126.3	119.3
C12	C9	C15	H3	243.8	239.6
C1	C4	C9	C15	68.0	57.2
C4	C9	C15	H3	117.6	120.3
C15	C9	C4	H19	180.9	176.4
O28	C15	C9	C4	75.2	84.2
O28	C15	C9	H3	317.7	323.9
C12	C9	C4	H3	116.0	119.8
C1	C4	C9	C8	129.6	119.8
C1	C4	C9	H19	247.1	240.8
C15	C9	C4	H3	242.3	239.7
C9	C4	C8	C6	170.6	178.9
C9	C4	C8	C17	298.3	290.3
C9	C4	C8	H2	55.8	56.9
O2	C3	C11	H1	140.6	142.1
C11	C3	C1	C4	3.2	3.6
C1	C3	C11	H1	207.1	208.3
C8	C6	C11	C3	50.2	55.5
C3	C11	C6	C27	286.9	295.1
C6	C11	C3	H4	239.6	240.2
C6	C11	C3	H5	120.4	119.8
H4	C11	C3	H5	240.8	239.6
C1	C4	C8	C9	230.8	240.2
C1	C4	C8	H19	113.4	119.0
C4	C8	C6	C11	296.7	280.2
C6	C8	C4	C17	232.3	248.6
C4	C8	C6	C27	57.0	40.5
C4	C8	C6	C10	175.2	159.4
C6	C8	C4	H2	114.8	121.9
C4	C8	C17	C19	186.5	206.5
C17	C8	C4	H2	242.5	233.4
C4	C8	C17	H20	305.5	325.0
C4	C8	C17	H21	67.5	87.9
C6	C11	C3	H1	128.6	132.0
C3	C11	C6	H4	120.4	119.8
C3	C11	C6	H5	239.6	240.2
C11	C6	C8	C17	161.3	161.4
C8	C6	C11	C27	123.2	120.4
C8	C6	C11	C10	248.0	245.8
C11	C6	C8	H2	51.8	42.4
C11	C6	C27	H13	180.0	178.6
C11	C6	C27	H14	300.0	298.6
C11	C6	C27	H15	60.0	58.6
C11	C6	C10	O13	99.5	96.8
H4	C11	C6	H5	119.2	120.3
C3	C11	C6	C8	50.2	55.5
C4	C8	C6	C17	135.3	118.8
C4	C8	C6	H2	244.9	237.8
C11	C6	C8	C27	239.7	239.7
C8	C6	C11	H4	289.8	295.7
C8	C6	C11	H5	170.6	175.4
C6	C8	C17	C19	319.8	320.5
C17	C8	C6	H2	109.6	119.0
C6	C8	C17	H20	78.8	79.0
C6	C8	C17	H21	200.8	201.9
C8	C6	C27	H13	59.9	60.0
C8	C6	C27	H14	179.9	180.0
C8	C6	C27	H15	299.9	300.0
C8	C6	C10	O13	215.7	213.2
C4	C8	C17	C6	226.7	246.0
C4	C8	C17	H2	117.5	126.9
C17	C8	C6	C11	161.3	161.4
C17	C8	C6	C27	281.6	281.7
C17	C8	C6	C10	39.8	40.6
C6	C8	C17	H2	250.8	240.9
C8	C17	C19	H9	144.4	264.7
C8	C17	C19	H10	265.1	143.2
H20	C17	C8	H21	237.9	237.1
C8	C6	C27	C11	239.9	241.4
C27	C6	C11	H4	166.5	175.3
C27	C6	C11	H5	47.4	54.9
C27	C6	C8	C17	281.6	281.7
C8	C6	C27	C10	112.3	114.3
C27	C6	C8	H2	172.0	162.7
C27	C6	C10	O13	335.8	331.7
H13	C27	C6	H14	240.0	240.0
H13	C27	C6	H15	120.0	120.0
H14	C27	C6	H15	240.0	240.0
C3	C11	C6	C10	162.1	169.7
C8	C6	C10	C11	116.2	116.4
C10	C6	C8	C17	39.8	40.6
C8	C6	C10	C27	239.9	241.5
C10	C6	C8	H2	290.2	281.6
C21	C10	C6	O13	241.0	240.8
C6	C10	C21	C25	106.0	122.8
C6	C10	C21	H11	225.3	241.1
C6	C10	C21	H12	346.7	4.5
C19	C10	C6	O13	119.9	120.8
C6	C10	C19	H9	240.8	120.6
C6	C10	C19	H10	120.1	242.2
C6	C10	O13	C16	254.8	217.7
C19	C17	C8	H2	69.0	79.6
C8	C17	C19	H20	118.9	118.5
C8	C17	C19	H21	241.1	241.5
C10	C19	C17	H9	240.3	119.2
C10	C19	C17	H10	119.6	240.7
H9	C19	C17	H10	239.3	121.5
C8	C6	C10	C21	96.7	94.0
C6	C10	C21	O13	124.0	121.9
C19	C10	C21	O13	245.0	239.7
C21	C10	C19	H9	114.6	0.2
C21	C10	C19	H10	353.9	121.8
C21	C10	O13	C16	21.2	339.2
C25	C21	C10	H11	240.7	241.6
C25	C21	C10	H12	119.4	118.3
C10	C21	C25	H24	129.1	257.9
C10	C21	C25	H25	250.9	135.0
H11	C21	C10	H12	238.7	236.7
C8	C6	C10	C19	335.6	334.1
C8	C17	C19	C10	24.7	23.9
C6	C10	C19	O13	237.6	238.6
C17	C19	C10	H9	119.7	240.8
C17	C19	C10	H10	240.4	119.2
C21	C10	C19	O13	111.3	118.1
C19	C10	C21	C25	227.0	240.6
C19	C10	C21	H11	346.4	359.0
C19	C10	C21	H12	107.7	122.3
C19	C10	O13	C16	135.5	99.1
H9	C19	C10	H10	120.7	238.4
C19	C10	O13	C21	114.3	120.0
O13	C10	C21	C25	342.0	0.9
O13	C10	C21	H11	101.3	119.3
O13	C10	C21	H12	222.6	242.6
O13	C10	C19	H9	3.2	242.0
O13	C10	C19	H10	242.5	3.6
C10	O13	C16	O23	165.7	212.2
C25	C21	C10	O13	342.0	0.9
C10	C21	C25	H11	119.3	118.4
C10	C21	C25	H12	240.7	241.7
H11	C21	C25	H12	121.3	123.4
H24	C25	C21	H25	238.2	122.9
C10	C21	C25	C16	10.0	16.5
H1	C3	C1	C4	210.3	212.4
C1	C3	H1	C11	154.7	152.6
H1	C3	C11	C6	128.6	132.0
H1	C3	C11	H4	249.0	251.8
H1	C3	C11	H5	8.2	12.1
C4	C8	H2	C6	123.3	119.0
C4	C8	H2	C17	232.2	232.4
H2	C8	C6	C11	51.8	42.4
C6	C8	H2	C17	108.9	113.4
H2	C8	C6	C27	172.0	162.7
H2	C8	C6	C10	290.2	281.6
H2	C8	C17	C19	69.0	79.6
H2	C8	C17	H20	188.0	198.1
H2	C8	C17	H21	310.1	321.0
C12	C9	H3	C4	241.0	240.7
C15	C9	H3	C4	121.9	120.3
H3	C9	C4	H19	298.6	296.7
C3	C11	H4	C6	237.6	240.6
H4	C11	C3	H1	249.0	251.8
C3	C11	H4	H5	118.8	120.3
H4	C11	C6	C27	166.5	175.3
C6	C11	H4	H5	241.2	239.7
C3	C11	H5	C6	122.4	119.4
H5	C11	C3	H1	8.2	12.1
C3	C11	H5	H4	241.2	239.7
H5	C11	C6	C27	47.4	54.9
C6	C11	H5	H4	118.7	120.3
H6	C12	C7	C5	78.2	69.1
C7	C12	H6	C9	238.5	239.7
C7	C12	H6	H7	119.2	119.8
H6	C12	C9	C4	288.8	296.5
H6	C12	C9	H3	44.9	56.4
H7	C12	C7	C5	197.7	188.9
C7	C12	H7	C9	121.5	120.3
C7	C12	H7	H6	240.8	240.1
H7	C12	C9	C4	169.3	176.8
H7	C12	C9	H3	285.4	296.6
H8	C14	C7	C5	173.1	180.3
C17	C19	H9	H10	121.0	238.5
H9	C19	C10	C21	114.6	0.2
H9	C19	C10	O13	3.2	242.0
C10	C19	H9	H10	239.0	121.6
C17	C19	H10	H9	239.0	121.5
H10	C19	C10	C21	353.9	121.8
H10	C19	C10	O13	242.5	3.6
C10	C19	H10	H9	121.0	238.4
H11	C21	C10	O13	101.3	119.3
C10	C21	H11	C25	244.0	246.6
C10	C21	H11	H12	122.0	123.2
C25	C21	H11	H12	238.0	236.7
H11	C21	C25	H24	9.8	139.5
H11	C21	C25	H25	131.5	16.6
H12	C21	C10	O13	222.6	242.6
C10	C21	H12	C25	116.1	113.4
C10	C21	H12	H11	238.1	236.7
C25	C21	H12	H11	122.0	123.3
H12	C21	C25	H24	248.4	16.1
H12	C21	C25	H25	10.2	253.2
C6	C27	H13	H14	120.0	120.0
C6	C27	H13	H15	240.0	240.0
H14	C27	H13	H15	120.0	120.0
C6	C27	H14	H13	240.0	240.0
C6	C27	H14	H15	120.0	120.0
H13	C27	H14	H15	240.0	240.0
C6	C27	H15	H13	120.0	120.0
C6	C27	H15	H14	240.0	240.0
H13	C27	H15	H14	120.0	120.0
H17	C30	H16	H18	120.0	120.0
H16	C30	H17	H18	240.0	240.0
H16	C30	H18	H17	120.0	120.0
C1	C4	H19	C9	116.2	118.7
C1	C4	H19	C8	242.7	241.5
H19	C4	C9	H3	298.6	296.7
H19	C4	C8	C6	288.1	300.1
H19	C4	C8	C17	55.7	51.5
H19	C4	C8	H2	173.2	178.1
C8	C17	H20	C19	246.1	245.8
H20	C17	C8	H2	188.0	198.1
C8	C17	H20	H21	123.0	122.8
H20	C17	C19	H9	25.4	146.1
H20	C17	C19	H10	146.2	24.6
C8	C17	H21	C19	113.9	114.2
H21	C17	C8	H2	310.1	321.0
C8	C17	H21	H20	237.0	237.1
H21	C17	C19	H9	263.3	23.2
H21	C17	C19	H10	24.0	261.7
C26	C18	H22	H23	118.7	240.9
H22	C18	C5	C29	167.4	42.2
C26	C18	H23	H22	241.2	119.2
H23	C18	C5	C29	48.3	161.3
H24	C25	C21	H11	9.8	139.5
H24	C25	C21	H12	248.4	16.1
C21	C25	H24	H25	122.6	237.1
H25	C25	C21	H11	131.5	16.6
H25	C25	C21	H12	10.2	253.2
C21	C25	H25	H24	237.4	122.9
C20	C26	H26	C18	242.0	242.0
C20	C26	H26	H27	121.0	121.0
H26	C26	C18	H22	302.2	61.4
H26	C26	C18	H23	61.4	302.3
C20	C26	H27	C18	118.0	118.1
C20	C26	H27	H26	239.0	239.0
H27	C26	C18	H22	181.5	300.5
H27	C26	C18	H23	300.7	181.3
C5	C29	H28	H29	120.0	120.0
C5	C29	H28	H30	240.0	240.0
H29	C29	H28	H30	120.0	120.0
C5	C29	H29	H28	239.9	240.1
C5	C29	H29	H30	120.0	120.1
H28	C29	H29	H30	240.1	240.0
C5	C29	H30	H28	120.0	120.0
C5	C29	H30	H29	240.0	240.0
H28	C29	H30	H29	119.9	120.0