PDB Chemical Component YNE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YNE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C3	1.495	1.506
C3	N1	1.339	1.350
C3	C5	1.429	1.354
N1	C2	1.453	1.465
N1	N	1.352	1.401
N	C1	1.384	1.308
C5	C1	1.493	1.399
C5	C6	1.473	1.507
C1	C	1.513	1.508
C6	C7	1.512	1.507
C7	O	1.385	1.346
C7	N2	1.339	1.303
O	C8	1.359	1.350
C8	N3	1.350	1.316
C8	C9	1.458	1.469
N3	N2	1.424	1.287
C9	S	1.738	1.753
C9	C10	1.451	1.339
S	C21	1.699	1.759
C21	C20	1.395	1.399
C21	C16	1.488	1.399
C20	C19	1.406	1.375
C19	C18	1.385	1.389
C18	C17	1.424	1.361
C17	C16	1.426	1.414
C16	C10	1.494	1.452
C10	O1	1.333	1.360
O1	C11	1.447	1.429
C11	C15	1.497	1.532
C11	C12	1.538	1.531
C15	C14	1.535	1.530
C14	N4	1.463	1.469
N4	C13	1.493	1.469
C13	C12	1.556	1.530
C4	H41C	1.100	1.090
C4	H42C	1.100	1.090
C4	H43C	1.100	1.090
C2	H21C	1.100	1.090
C2	H22C	1.100	1.090
C2	H23C	1.100	1.090
C6	H61C	1.100	1.090
C6	H62C	1.100	1.090
C	HC1	1.100	1.089
C	HC2	1.100	1.091
C	HC3	1.100	1.090
C20	H20	1.079	1.080
C19	H19	1.080	1.079
C18	H18	1.080	1.080
C17	H17	1.080	1.080
C11	H11	1.100	1.090
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.091
C14	H141	1.100	1.090
C14	H142	1.100	1.090
N4	H4	1.000	1.009
C13	H131	1.100	1.090
C13	H132	1.100	1.090

Bond Angles for YNE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C3	N1	123.3	126.2
C4	C3	C5	130.4	126.1
C3	C4	H41C	109.5	109.5
C3	C4	H42C	109.5	109.5
C3	C4	H43C	109.5	109.5
N1	C3	C5	106.3	107.7
C3	N1	C2	130.1	126.0
C3	N1	N	114.2	107.9
C3	C5	C1	105.4	107.9
C3	C5	C6	125.9	126.0
C2	N1	N	115.6	126.0
N1	C2	H21C	109.5	109.5
N1	C2	H22C	109.5	109.5
N1	C2	H23C	109.5	109.5
N1	N	C1	107.7	108.2
N	C1	C5	106.2	108.3
N	C1	C	125.6	125.9
C1	C5	C6	128.7	126.1
C5	C1	C	128.2	125.9
C5	C6	C7	105.8	109.5
C5	C6	H61C	110.4	109.5
C5	C6	H62C	110.4	109.5
C1	C	HC1	109.5	109.5
C1	C	HC2	109.5	109.4
C1	C	HC3	109.5	109.5
C6	C7	O	120.9	126.1
C6	C7	N2	126.6	126.1
C7	C6	H61C	110.4	109.5
C7	C6	H62C	110.4	109.5
O	C7	N2	112.4	107.7
C7	O	C8	100.0	106.3
C7	N2	N3	108.7	109.6
O	C8	N3	118.3	107.2
O	C8	C9	113.2	126.4
N3	C8	C9	128.4	126.5
C8	N3	N2	100.5	109.2
C8	C9	S	123.2	124.4
C8	C9	C10	128.7	124.4
S	C9	C10	107.9	111.2
C9	S	C21	95.6	92.3
C9	C10	C16	116.7	114.5
C9	C10	O1	122.1	122.7
S	C21	C20	129.7	130.4
S	C21	C16	114.2	110.0
C20	C21	C16	116.2	119.7
C21	C20	C19	121.2	120.3
C21	C20	H20	119.4	119.9
C21	C16	C17	122.2	118.8
C21	C16	C10	105.4	112.0
C20	C19	C18	122.7	120.2
C19	C20	H20	119.4	119.8
C20	C19	H19	118.7	119.9
C19	C18	C17	120.3	120.6
C18	C19	H19	118.7	119.9
C19	C18	H18	119.9	119.7
C18	C17	C16	117.5	120.5
C17	C18	H18	119.8	119.7
C18	C17	H17	121.2	119.8
C17	C16	C10	132.4	129.2
C16	C17	H17	121.3	119.8
C16	C10	O1	121.0	122.7
C10	O1	C11	118.3	116.9
O1	C11	C15	110.2	109.5
O1	C11	C12	108.9	109.5
O1	C11	H11	109.7	109.6
C15	C11	C12	110.5	109.1
C11	C15	C14	116.0	109.3
C15	C11	H11	109.0	109.5
C11	C15	H151	107.8	109.5
C11	C15	H152	107.8	109.5
C11	C12	C13	109.9	109.3
C12	C11	H11	108.5	109.6
C11	C12	H121	109.4	109.6
C11	C12	H122	109.4	109.5
C15	C14	N4	105.8	109.5
C14	C15	H151	107.8	109.5
C14	C15	H152	107.8	109.5
C15	C14	H141	110.4	109.5
C15	C14	H142	110.4	109.5
C14	N4	C13	115.5	111.2
N4	C14	H141	110.4	109.4
N4	C14	H142	110.4	109.5
C14	N4	H4	107.9	111.0
N4	C13	C12	111.2	109.5
C13	N4	H4	107.9	111.0
N4	C13	H131	109.0	109.5
N4	C13	H132	109.0	109.5
C13	C12	H121	109.4	109.5
C13	C12	H122	109.4	109.5
C12	C13	H131	109.0	109.5
C12	C13	H132	109.1	109.5
H41C	C4	H42C	109.5	109.5
H41C	C4	H43C	109.5	109.4
H42C	C4	H43C	109.5	109.5
H21C	C2	H22C	109.5	109.5
H21C	C2	H23C	109.5	109.4
H22C	C2	H23C	109.5	109.5
H61C	C6	H62C	109.5	109.5
HC1	C	HC2	109.5	109.5
HC1	C	HC3	109.5	109.6
HC2	C	HC3	109.4	109.4
H151	C15	H152	109.5	109.5
H121	C12	H122	109.4	109.5
H141	C14	H142	109.4	109.5
H131	C13	H132	109.5	109.5

Torsion Angles for YNE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C3	C4	C5	177.7	180.3
C4	C3	N1	C2	2.9	0.0
C4	C3	N1	N	178.8	180.0
C4	C3	C5	C1	179.0	179.9
C4	C3	C5	C6	356.9	0.0
H41C	C4	C3	H42C	240.0	239.9
H41C	C4	C3	H43C	120.0	119.9
H42C	C4	C3	H43C	240.0	240.0
C4	C3	N1	C5	181.8	179.7
N1	C3	C4	H41C	89.0	90.0
N1	C3	C4	H42C	209.0	210.0
N1	C3	C4	H43C	329.0	330.1
N1	C3	C5	C1	1.0	359.6
N1	C3	C5	C6	178.9	179.7
C2	N1	C3	N	184.1	180.0
C3	N1	C2	H21C	175.9	90.0
C3	N1	C2	H22C	295.9	210.0
C3	N1	C2	H23C	55.9	330.0
C3	N1	N	C1	3.9	360.0
C4	C3	C5	N1	178.0	180.3
C5	C3	C4	H41C	271.3	269.7
C5	C3	C4	H42C	31.3	29.7
C5	C3	C4	H43C	151.3	149.7
C5	C3	N1	C2	181.0	180.3
C5	C3	N1	N	357.0	0.3
N	C1	C5	C3	1.2	0.4
C1	C5	C3	C6	182.0	179.8
C3	C5	C1	C	178.9	180.1
C3	C5	C6	C7	93.4	90.0
C3	C5	C6	H61C	212.8	210.0
C3	C5	C6	H62C	333.9	330.0
C2	N1	C3	C5	181.0	180.3
C3	N1	C2	N	175.9	180.0
C2	N1	N	C1	180.5	180.0
H21C	C2	N1	H22C	240.0	240.0
H21C	C2	N1	H23C	120.0	119.9
H22C	C2	N1	H23C	240.0	240.0
N	N1	C3	C5	357.0	0.3
C3	N1	N	C2	183.5	180.0
N	N1	C2	H21C	0.0	270.0
N	N1	C2	H22C	120.0	30.0
N	N1	C2	H23C	240.0	150.1
N1	N	C1	C5	357.0	359.8
N1	N	C1	C	179.3	180.0
C3	C5	C1	N	1.2	0.4
N	C1	C5	C6	183.3	180.3
C5	C1	N	C	177.8	179.7
N	C1	C	HC1	0.0	90.1
N	C1	C	HC2	120.0	210.1
N	C1	C	HC3	240.0	330.0
C3	C5	C1	C6	177.9	180.2
N	C1	C5	C	182.3	180.3
C1	C5	C6	C7	270.8	270.2
C1	C5	C6	H61C	30.2	30.2
C1	C5	C6	H62C	151.4	150.2
C5	C1	C	HC1	182.7	270.4
C5	C1	C	HC2	302.8	30.4
C5	C1	C	HC3	62.7	150.3
C3	C5	C6	C1	182.5	179.8
C6	C5	C1	C	1.0	360.0
C5	C6	C7	O	73.6	270.0
C5	C6	C7	N2	250.3	89.7
C7	C6	C5	H61C	240.6	240.0
C7	C6	C5	H62C	119.4	120.0
H61C	C6	C5	H62C	238.8	240.0
N	C1	C	C5	177.3	179.7
C	C1	C5	C6	1.0	360.0
HC1	C	C1	HC2	240.0	240.0
HC1	C	C1	HC3	120.0	120.1
HC2	C	C1	HC3	240.0	240.1
C5	C6	C7	H61C	119.4	120.0
C5	C6	C7	H62C	240.6	240.0
O	C7	C6	N2	183.3	180.3
C6	C7	O	C8	175.6	180.0
C6	C7	N2	N3	183.6	179.8
H61C	C6	C7	H62C	121.1	120.0
C6	C7	O	N2	177.1	179.7
O	C7	C6	H61C	314.2	150.0
O	C7	C6	H62C	193.1	30.0
O	C7	N2	N3	0.5	359.5
C7	O	C8	N3	2.3	0.0
C7	O	C8	C9	180.3	180.0
C6	C7	N2	O	183.1	180.3
N2	C7	C6	H61C	130.9	329.7
N2	C7	C6	H62C	9.8	209.7
N2	C7	O	C8	358.4	0.3
C8	N3	N2	C7	0.8	0.5
C8	O	C7	N2	358.4	0.3
N3	C8	O	C9	182.0	180.1
O	C8	N3	N2	358.0	359.7
O	C8	C9	S	22.4	0.1
O	C8	C9	C10	196.3	179.8
C7	N2	N3	C8	0.8	0.5
O	C8	N3	C9	177.7	179.9
N3	C8	C9	S	200.2	180.0
N3	C8	C9	C10	14.1	359.7
O	C8	C9	N3	182.2	180.1
C9	C8	N3	N2	180.3	179.7
S	C9	C8	C10	186.0	180.3
C8	C9	S	C21	179.3	179.9
C8	C9	C10	C16	180.7	179.9
C8	C9	C10	O1	4.8	0.0
N2	N3	C8	C9	180.3	179.7
C8	C9	S	C10	175.0	179.7
S	C9	C10	C16	355.4	359.6
S	C9	C10	O1	179.5	179.7
C9	S	C21	C20	176.8	180.0
C9	S	C21	C16	357.0	360.0
C8	C9	C10	S	185.3	180.3
C10	C9	S	C21	4.2	0.2
C21	C16	C10	C9	2.5	0.4
C17	C16	C10	C9	181.1	180.2
C16	C10	C9	O1	175.9	179.9
C9	C10	O1	C11	125.3	90.0
C21	S	C9	C10	4.2	0.2
C20	C21	S	C16	179.8	180.0
S	C21	C20	C19	179.2	180.0
S	C21	C20	H20	359.2	359.9
S	C21	C16	C17	182.0	180.0
S	C21	C16	C10	0.8	359.8
S	C21	C20	C16	180.2	180.0
C20	C21	C16	C17	2.2	360.0
C20	C21	C16	C10	181.0	179.8
C21	C20	C19	C18	358.8	0.0
C19	C20	C21	H20	180.0	180.1
C21	C20	C19	H19	178.8	179.9
C9	C10	C16	C21	2.5	0.4
S	C21	C16	C20	179.9	180.0
C16	C21	C20	C19	359.0	0.0
C16	C21	C20	H20	179.0	180.0
C18	C17	C16	C21	358.8	360.0
C17	C16	C21	C10	181.2	180.2
C21	C16	C17	H17	178.8	180.0
C21	C16	C10	O1	178.5	180.3
C19	C20	C21	C16	359.0	0.0
C21	C20	C19	H20	180.0	179.9
C20	C19	C18	C17	2.3	359.9
C18	C19	C20	H19	180.0	180.1
C20	C19	C18	H18	182.3	180.0
C18	C19	C20	H20	178.8	180.1
C20	C19	C18	H19	180.0	179.9
C19	C18	C17	C16	358.9	0.0
C17	C18	C19	H18	180.0	180.0
C19	C18	C17	H17	178.9	180.0
C21	C16	C17	C18	358.8	360.0
C17	C18	C19	H19	182.3	180.0
C19	C18	C17	H18	180.0	180.0
C18	C17	C16	C10	180.4	180.2
C16	C17	C18	H17	180.0	180.1
C9	C10	C16	C17	181.1	180.2
C21	C16	C17	C10	178.4	179.8
C16	C17	C18	H18	179.0	180.0
C18	C17	C16	H17	180.0	179.9
C17	C16	C10	O1	357.1	0.1
C9	C10	C16	O1	184.0	180.1
C21	C16	C10	C17	181.4	180.2
C10	C16	C17	H17	0.4	0.2
C16	C10	O1	C11	309.6	270.1
C9	C10	O1	C16	175.8	179.9
C10	O1	C11	C15	144.7	150.0
C10	O1	C11	C12	266.1	269.6
C10	O1	C11	H11	24.7	29.9
C15	C11	O1	C12	238.6	240.4
O1	C11	C15	C14	65.3	177.5
C15	C11	O1	H11	120.0	120.1
O1	C11	C15	H151	186.2	297.5
O1	C11	C15	H152	304.3	57.6
O1	C11	C12	C13	289.0	182.5
C12	C11	O1	H11	241.4	239.7
O1	C11	C12	H121	49.1	302.5
O1	C11	C12	H122	168.9	62.5
O1	C11	C15	C12	120.4	119.9
O1	C11	C15	H11	239.6	239.8
C15	C11	C12	C13	50.2	302.3
C12	C11	C15	H11	119.1	120.0
C15	C11	C12	H121	170.3	62.3
C15	C11	C12	H122	290.1	182.4
C11	C15	C14	N4	56.1	300.8
C14	C15	C11	H151	239.1	240.1
C14	C15	C11	H152	120.9	120.0
C11	C15	C14	H141	175.5	60.8
C11	C15	C14	H142	296.6	180.8
H151	C15	C11	H152	241.9	239.9
O1	C11	C12	C15	238.8	240.2
O1	C11	C12	H11	119.3	120.2
C12	C11	C15	C14	304.8	57.7
C15	C11	C12	H11	240.6	240.1
C12	C11	C15	H151	65.8	177.6
C12	C11	C15	H152	183.9	297.7
N4	C13	C12	C11	308.4	59.2
C13	C12	C11	H121	239.9	240.0
C13	C12	C11	H122	120.1	119.9
C11	C12	C13	H131	188.2	299.3
C11	C12	C13	H132	68.7	179.2
H121	C12	C11	H122	240.2	239.9
C14	C15	C11	C12	304.8	57.7
C14	C15	C11	H11	185.7	297.7
C11	C15	C14	H151	120.9	119.9
C11	C15	C14	H152	239.1	240.0
C15	C14	N4	C13	303.1	61.7
N4	C14	C15	H141	240.6	240.0
N4	C14	C15	H142	119.4	120.0
C15	C14	N4	H4	64.0	185.8
H151	C15	C14	H152	118.1	120.1
H141	C14	C15	H142	238.9	240.0
N4	C14	C15	H151	295.1	180.9
N4	C14	C15	H152	177.0	60.8
C15	C14	N4	H141	119.5	120.0
C15	C14	N4	H142	240.6	239.9
C14	N4	C13	C12	58.3	298.3
C13	N4	C14	H4	239.1	235.9
C14	N4	C13	H131	178.5	58.2
C14	N4	C13	H132	298.0	178.2
H141	C14	N4	H142	121.1	120.0
C11	C12	C13	N4	308.4	59.2
C13	N4	C14	H141	183.6	301.7
C13	N4	C14	H142	62.5	181.8
C14	N4	C13	H4	120.9	124.1
N4	C13	C12	H121	188.3	299.2
N4	C13	C12	H122	68.5	179.1
C12	C13	N4	H131	239.7	240.0
C12	C13	N4	H132	120.3	120.0
H131	C13	N4	H132	240.6	240.0
C13	C12	C11	H11	169.7	62.2
C11	C12	C13	H121	120.1	120.1
C11	C12	C13	H122	239.9	240.1
C12	C13	N4	H4	297.4	174.2
N4	C13	C12	H131	120.3	120.0
N4	C13	C12	H132	239.7	240.0
H121	C12	C13	H122	119.8	120.0
H131	C13	C12	H132	119.5	120.0
H41C	C4	C3	N1	89.0	90.0
H41C	C4	C3	C5	271.3	269.7
C3	C4	H41C	H42C	120.0	120.0
C3	C4	H41C	H43C	240.0	240.0
H42C	C4	H41C	H43C	120.0	120.0
H42C	C4	C3	N1	209.0	210.0
H42C	C4	C3	C5	31.3	29.7
C3	C4	H42C	H41C	240.0	240.0
C3	C4	H42C	H43C	120.0	120.0
H41C	C4	H42C	H43C	240.0	240.1
H43C	C4	C3	N1	329.0	330.1
H43C	C4	C3	C5	151.3	149.7
C3	C4	H43C	H41C	120.0	120.0
C3	C4	H43C	H42C	240.0	240.0
H41C	C4	H43C	H42C	120.0	120.0
H21C	C2	N1	N	0.0	270.0
N1	C2	H21C	H22C	120.0	120.0
N1	C2	H21C	H23C	240.0	240.0
H22C	C2	H21C	H23C	120.0	120.0
H22C	C2	N1	N	120.0	30.0
N1	C2	H22C	H21C	240.0	240.0
N1	C2	H22C	H23C	120.0	120.0
H21C	C2	H22C	H23C	240.0	240.0
H23C	C2	N1	N	240.0	150.1
N1	C2	H23C	H21C	120.0	120.0
N1	C2	H23C	H22C	240.0	240.0
H21C	C2	H23C	H22C	120.0	120.0
C5	C6	H61C	C7	243.4	240.0
C5	C6	H61C	H62C	121.7	120.0
H61C	C6	C7	O	314.2	150.0
H61C	C6	C7	N2	130.9	329.7
C7	C6	H61C	H62C	238.3	240.0
C5	C6	H62C	C7	116.6	120.0
C5	C6	H62C	H61C	238.3	240.0
H62C	C6	C7	O	193.1	30.0
H62C	C6	C7	N2	9.8	209.7
C7	C6	H62C	H61C	121.7	120.0
C1	C	HC1	HC2	120.0	119.9
C1	C	HC1	HC3	240.0	240.0
HC2	C	HC1	HC3	120.0	120.0
C1	C	HC2	HC1	240.0	240.0
C1	C	HC2	HC3	120.0	119.9
HC1	C	HC2	HC3	240.0	239.9
C1	C	HC3	HC1	120.0	120.0
C1	C	HC3	HC2	240.0	240.1
HC1	C	HC3	HC2	120.0	120.0
H20	C20	C21	C16	179.0	180.0
C21	C20	H20	C19	180.0	180.1
H20	C20	C19	C18	178.8	180.1
H20	C20	C19	H19	358.8	360.0
C20	C19	H19	C18	180.0	180.1
H19	C19	C20	H20	358.8	360.0
H19	C19	C18	C17	182.3	180.0
H19	C19	C18	H18	2.3	0.1
C19	C18	H18	C17	180.0	180.0
H18	C18	C19	H19	2.3	0.1
H18	C18	C17	C16	179.0	180.0
H18	C18	C17	H17	359.0	360.0
C18	C17	H17	C16	180.0	180.1
H17	C17	C18	H18	359.0	360.0
H17	C17	C16	C10	0.4	0.2
O1	C11	H11	C15	120.8	120.1
O1	C11	H11	C12	241.2	239.8
C15	C11	H11	C12	120.4	119.7
H11	C11	C15	C14	185.7	297.7
H11	C11	C15	H151	306.6	57.6
H11	C11	C15	H152	64.7	177.7
H11	C11	C12	C13	169.7	62.2
H11	C11	C12	H121	289.7	182.2
H11	C11	C12	H122	49.6	302.3
H151	C15	C11	C12	65.8	177.6
C11	C15	H151	C14	234.1	240.2
H151	C15	C11	H11	306.6	57.6
C11	C15	H151	H152	117.0	120.1
H151	C15	C14	N4	295.1	180.9
C14	C15	H151	H152	242.9	239.9
H151	C15	C14	H141	54.6	300.9
H151	C15	C14	H142	175.7	60.8
H152	C15	C11	C12	183.9	297.7
C11	C15	H152	C14	125.9	119.8
H152	C15	C11	H11	64.7	177.7
C11	C15	H152	H151	243.0	239.9
H152	C15	C14	N4	177.0	60.8
C14	C15	H152	H151	117.1	120.1
H152	C15	C14	H141	296.4	180.8
H152	C15	C14	H142	57.5	300.8
C11	C12	H121	C13	239.6	240.1
H121	C12	C11	H11	289.7	182.2
C11	C12	H121	H122	119.8	120.1
C13	C12	H121	H122	240.2	240.0
H121	C12	C13	H131	68.1	179.2
H121	C12	C13	H132	308.6	59.2
C11	C12	H122	C13	120.4	119.8
H122	C12	C11	H11	49.6	302.3
C11	C12	H122	H121	240.2	239.9
C13	C12	H122	H121	119.8	120.1
H122	C12	C13	H131	308.2	59.2
H122	C12	C13	H132	188.8	299.2
C15	C14	H141	N4	243.4	240.0
H141	C14	C15	H151	54.6	300.9
H141	C14	C15	H152	296.4	180.8
C15	C14	H141	H142	121.7	120.0
H141	C14	N4	C13	183.6	301.7
N4	C14	H141	H142	238.3	240.0
H141	C14	N4	H4	304.5	65.8
C15	C14	H142	N4	116.6	120.1
H142	C14	C15	H151	175.7	60.8
H142	C14	C15	H152	57.5	300.8
C15	C14	H142	H141	238.3	240.0
H142	C14	N4	C13	62.5	181.8
N4	C14	H142	H141	121.7	119.9
H142	C14	N4	H4	183.4	305.9
C14	N4	H4	C13	234.5	235.8
H4	N4	C14	H141	304.5	65.8
H4	N4	C14	H142	183.4	305.9
H4	N4	C13	C12	297.4	174.2
H4	N4	C13	H131	57.7	294.1
H4	N4	C13	H132	177.1	54.1
N4	C13	H131	C12	238.4	240.0
H131	C13	N4	H4	57.7	294.1
N4	C13	H131	H132	119.2	120.0
H131	C13	C12	H121	68.1	179.2
H131	C13	C12	H122	308.2	59.2
C12	C13	H131	H132	240.8	240.0
N4	C13	H132	C12	121.6	120.0
H132	C13	N4	H4	177.1	54.1
N4	C13	H132	H131	240.8	240.0
H132	C13	C12	H121	308.6	59.2
H132	C13	C12	H122	188.8	299.2
C12	C13	H132	H131	119.2	120.0