PDB Chemical Component YM8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YM8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
CAZ |
1.530 |
1.530 |
| CAA |
HAA |
1.099 |
1.090 |
| CAA |
HAAA |
1.100 |
1.090 |
| CAA |
HAAB |
1.100 |
1.090 |
| NBA |
CAB |
1.469 |
1.469 |
| CAB |
HAB |
1.100 |
1.090 |
| CAB |
HABA |
1.100 |
1.091 |
| CAB |
HABB |
1.099 |
1.090 |
| NBA |
CAC |
1.470 |
1.470 |
| CAC |
HAC |
1.100 |
1.091 |
| CAC |
HACA |
1.100 |
1.090 |
| CAC |
HACB |
1.100 |
1.090 |
| CAF |
NAD |
1.140 |
1.135 |
| CL |
CAS |
1.732 |
1.735 |
| CAT |
CAF |
1.436 |
1.433 |
| CAH |
CAG |
1.391 |
1.394 |
| CAG |
CAI |
1.391 |
1.362 |
| CAG |
HAG |
1.080 |
1.079 |
| CAS |
CAH |
1.390 |
1.363 |
| CAH |
HAH |
1.080 |
1.080 |
| CAX |
CAI |
1.391 |
1.402 |
| CAI |
HAI |
1.080 |
1.080 |
| CAU |
CAJ |
1.392 |
1.396 |
| CAJ |
NAN |
1.321 |
1.316 |
| CAJ |
HAJ |
1.080 |
1.081 |
| CAK |
NAO |
1.323 |
1.312 |
| CAK |
CAY |
1.388 |
1.403 |
| CAK |
HAK |
1.080 |
1.080 |
| CAV |
CAL |
1.394 |
1.380 |
| CAX |
CAL |
1.391 |
1.405 |
| CAL |
HAL |
1.081 |
1.080 |
| CAZ |
CAM |
1.519 |
1.530 |
| CAM |
NBA |
1.472 |
1.468 |
| CAM |
HAM |
1.100 |
1.090 |
| CAM |
HAMA |
1.100 |
1.090 |
| NAN |
CAT |
1.342 |
1.332 |
| NAO |
CAV |
1.343 |
1.332 |
| CAU |
NAP |
1.339 |
1.327 |
| NAP |
CAW |
1.342 |
1.325 |
| CAV |
NAQ |
1.343 |
1.393 |
| NAQ |
CAU |
1.339 |
1.387 |
| NAQ |
HNAQ |
1.000 |
0.970 |
| CAW |
OAR |
1.366 |
1.355 |
| CAZ |
OAR |
1.441 |
1.429 |
| CAS |
CAY |
1.391 |
1.406 |
| CAW |
CAT |
1.392 |
1.404 |
| CAY |
CAX |
1.386 |
1.420 |
| CAZ |
HAZ |
1.100 |
1.090 |
Bond Angles for YM8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAZ |
CAA |
HAA |
109.5 |
109.4 |
| CAZ |
CAA |
HAAA |
109.4 |
109.4 |
| CAZ |
CAA |
HAAB |
109.5 |
109.5 |
| CAA |
CAZ |
CAM |
103.2 |
109.5 |
| CAA |
CAZ |
OAR |
108.1 |
109.5 |
| CAA |
CAZ |
HAZ |
110.6 |
109.4 |
| HAA |
CAA |
HAAA |
109.5 |
109.5 |
| HAA |
CAA |
HAAB |
109.4 |
109.5 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| NBA |
CAB |
HAB |
109.5 |
109.5 |
| NBA |
CAB |
HABA |
109.5 |
109.5 |
| NBA |
CAB |
HABB |
109.5 |
109.5 |
| HAB |
CAB |
HABA |
109.4 |
109.5 |
| HAB |
CAB |
HABB |
109.5 |
109.4 |
| HABA |
CAB |
HABB |
109.4 |
109.4 |
| NBA |
CAC |
HAC |
109.5 |
109.4 |
| NBA |
CAC |
HACA |
109.4 |
109.5 |
| NBA |
CAC |
HACB |
109.5 |
109.5 |
| HAC |
CAC |
HACA |
109.5 |
109.5 |
| HAC |
CAC |
HACB |
109.5 |
109.5 |
| HACA |
CAC |
HACB |
109.5 |
109.5 |
| CL |
CAS |
CAH |
120.0 |
120.2 |
| CL |
CAS |
CAY |
120.3 |
120.3 |
| CAH |
CAG |
CAI |
120.2 |
121.0 |
| CAH |
CAG |
HAG |
119.9 |
119.4 |
| CAI |
CAG |
HAG |
119.9 |
119.5 |
| CAG |
CAI |
HAI |
120.1 |
120.2 |
| CAS |
CAH |
HAH |
120.0 |
119.5 |
| CAX |
CAI |
HAI |
120.1 |
120.3 |
| CAU |
CAJ |
HAJ |
119.6 |
119.9 |
| NAN |
CAJ |
HAJ |
119.6 |
119.9 |
| CAJ |
NAN |
CAT |
120.0 |
120.0 |
| NAO |
CAK |
CAY |
120.7 |
120.2 |
| NAO |
CAK |
HAK |
119.7 |
119.9 |
| CAK |
NAO |
CAV |
122.3 |
122.7 |
| CAY |
CAK |
HAK |
119.6 |
119.9 |
| CAK |
CAY |
CAS |
120.6 |
121.9 |
| CAK |
CAY |
CAX |
119.1 |
118.8 |
| CAV |
CAL |
HAL |
120.3 |
120.8 |
| CAX |
CAL |
HAL |
120.2 |
120.7 |
| CAZ |
CAM |
NBA |
106.2 |
109.5 |
| CAZ |
CAM |
HAM |
110.3 |
109.5 |
| CAZ |
CAM |
HAMA |
110.3 |
109.5 |
| NBA |
CAM |
HAM |
110.3 |
109.5 |
| NBA |
CAM |
HAMA |
110.3 |
109.5 |
| HAM |
CAM |
HAMA |
109.5 |
109.4 |
| NAO |
CAV |
NAQ |
117.8 |
119.2 |
| CAU |
NAP |
CAW |
120.2 |
119.9 |
| NAP |
CAW |
OAR |
120.5 |
120.1 |
| NAP |
CAW |
CAT |
119.6 |
119.8 |
| CAV |
NAQ |
HNAQ |
116.6 |
120.0 |
| CAU |
NAQ |
HNAQ |
116.6 |
120.0 |
| CAS |
CAY |
CAX |
120.3 |
119.3 |
Torsion Angles for YM8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAA |
CAA |
CAZ |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
CAZ |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAZ |
HAAB |
240.0 |
240.0 |
| CAA |
CAZ |
CAM |
NBA |
181.8 |
175.0 |
| CAA |
CAZ |
CAM |
HAM |
301.3 |
295.0 |
| CAA |
CAZ |
CAM |
HAMA |
62.3 |
55.0 |
| CAZ |
CAA |
HAA |
HAAA |
120.0 |
119.9 |
| CAZ |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAA |
CAA |
CAZ |
CAM |
180.0 |
300.0 |
| HAA |
CAA |
CAZ |
OAR |
61.2 |
180.0 |
| HAA |
CAA |
CAZ |
HAZ |
298.4 |
60.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
120.0 |
| CAZ |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| CAZ |
CAA |
HAAA |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAZ |
CAM |
300.0 |
60.0 |
| HAAA |
CAA |
CAZ |
OAR |
181.3 |
300.0 |
| HAAA |
CAA |
CAZ |
HAZ |
58.5 |
180.0 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
239.9 |
| CAZ |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| CAZ |
CAA |
HAAB |
HAAA |
240.0 |
240.0 |
| HAAB |
CAA |
CAZ |
CAM |
60.0 |
180.0 |
| HAAB |
CAA |
CAZ |
OAR |
301.2 |
60.0 |
| HAAB |
CAA |
CAZ |
HAZ |
178.5 |
300.0 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| HAB |
CAB |
NBA |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
NBA |
HABB |
120.0 |
120.0 |
| HABA |
CAB |
NBA |
HABB |
240.0 |
240.0 |
| NBA |
CAB |
HAB |
HABA |
120.0 |
120.0 |
| NBA |
CAB |
HAB |
HABB |
240.0 |
240.0 |
| HABA |
CAB |
HAB |
HABB |
120.0 |
119.9 |
| NBA |
CAB |
HABA |
HAB |
240.0 |
239.9 |
| NBA |
CAB |
HABA |
HABB |
120.0 |
120.0 |
| HAB |
CAB |
HABA |
HABB |
240.0 |
240.1 |
| NBA |
CAB |
HABB |
HAB |
120.0 |
120.0 |
| NBA |
CAB |
HABB |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
HABB |
HABA |
119.9 |
120.0 |
| CAC |
NBA |
CAB |
HAB |
180.0 |
291.7 |
| CAC |
NBA |
CAB |
HABA |
300.0 |
51.7 |
| CAC |
NBA |
CAB |
HABB |
60.0 |
171.7 |
| HAC |
CAC |
NBA |
HACA |
240.0 |
240.0 |
| HAC |
CAC |
NBA |
HACB |
120.0 |
120.0 |
| HACA |
CAC |
NBA |
HACB |
240.0 |
239.9 |
| NBA |
CAC |
HAC |
HACA |
120.0 |
120.0 |
| NBA |
CAC |
HAC |
HACB |
240.0 |
240.0 |
| HACA |
CAC |
HAC |
HACB |
120.0 |
120.0 |
| NBA |
CAC |
HACA |
HAC |
240.0 |
240.1 |
| NBA |
CAC |
HACA |
HACB |
120.0 |
120.1 |
| HAC |
CAC |
HACA |
HACB |
240.0 |
240.0 |
| NBA |
CAC |
HACB |
HAC |
120.0 |
119.9 |
| NBA |
CAC |
HACB |
HACA |
240.1 |
239.9 |
| HAC |
CAC |
HACB |
HACA |
120.0 |
120.0 |
| CL |
CAS |
CAH |
HAH |
0.0 |
360.0 |
| CAK |
CAY |
CAS |
CL |
0.1 |
0.1 |
| CL |
CAS |
CAY |
CAX |
180.0 |
180.3 |
| CL |
CAS |
CAH |
CAG |
180.0 |
180.0 |
| CAI |
CAG |
CAH |
HAG |
180.0 |
180.3 |
| CAH |
CAG |
CAI |
HAI |
179.9 |
179.8 |
| CAH |
CAG |
CAI |
HAG |
180.0 |
179.7 |
| CAX |
CAI |
CAG |
HAI |
180.0 |
179.9 |
| CAH |
CAG |
HAG |
CAI |
180.0 |
180.3 |
| HAG |
CAG |
CAI |
HAI |
359.9 |
0.0 |
| CL |
CAS |
CAH |
CAY |
180.0 |
179.9 |
| CAS |
CAH |
CAG |
HAG |
180.0 |
179.7 |
| HAH |
CAH |
CAG |
CAI |
180.1 |
180.0 |
| HAH |
CAH |
CAG |
HAG |
0.0 |
359.7 |
| CAX |
CAI |
CAG |
HAG |
179.9 |
180.0 |
| CAG |
CAI |
CAX |
HAI |
180.0 |
180.1 |
| HAI |
CAI |
CAG |
HAG |
359.9 |
0.0 |
| NAN |
CAJ |
CAU |
HAJ |
180.0 |
179.6 |
| CAU |
CAJ |
NAN |
HAJ |
180.0 |
180.4 |
| HAJ |
CAJ |
NAN |
CAT |
181.4 |
180.0 |
| CAY |
CAK |
NAO |
HAK |
180.0 |
180.0 |
| NAO |
CAK |
CAY |
CAS |
180.2 |
180.0 |
| NAO |
CAK |
CAY |
CAX |
0.4 |
359.7 |
| CAK |
NAO |
CAV |
NAQ |
179.0 |
180.0 |
| CL |
CAS |
CAY |
CAK |
0.1 |
0.1 |
| NAO |
CAK |
CAY |
HAK |
180.0 |
180.0 |
| CAY |
CAK |
NAO |
CAV |
358.3 |
0.7 |
| CAS |
CAY |
CAK |
CAX |
179.8 |
180.3 |
| NAO |
CAK |
HAK |
CAY |
180.0 |
180.0 |
| HAK |
CAK |
NAO |
CAV |
178.4 |
180.7 |
| HAK |
CAK |
CAY |
CAS |
0.2 |
360.0 |
| HAK |
CAK |
CAY |
CAX |
180.4 |
179.7 |
| CAK |
NAO |
CAV |
CAL |
2.4 |
359.0 |
| CAX |
CAL |
CAV |
HAL |
180.0 |
180.0 |
| CAL |
CAX |
CAI |
HAI |
359.9 |
360.0 |
| CAK |
CAY |
CAX |
CAL |
0.0 |
0.2 |
| CAV |
CAL |
CAX |
HAL |
180.0 |
180.0 |
| CAM |
CAZ |
CAA |
HAA |
180.0 |
300.0 |
| CAM |
CAZ |
CAA |
HAAA |
300.0 |
60.0 |
| CAM |
CAZ |
CAA |
HAAB |
60.0 |
180.0 |
| CAA |
CAZ |
CAM |
OAR |
244.0 |
240.0 |
| CAA |
CAZ |
CAM |
HAZ |
118.3 |
120.0 |
| NBA |
CAM |
CAZ |
HAM |
240.5 |
240.0 |
| NBA |
CAM |
CAZ |
HAMA |
119.5 |
120.0 |
| HAM |
CAM |
CAZ |
HAMA |
239.0 |
240.0 |
| CAM |
NBA |
CAB |
HAB |
299.5 |
55.6 |
| CAM |
NBA |
CAB |
HABA |
59.5 |
175.6 |
| CAM |
NBA |
CAB |
HABB |
179.4 |
295.6 |
| CAM |
NBA |
CAC |
HAC |
58.1 |
60.0 |
| CAM |
NBA |
CAC |
HACA |
178.1 |
180.0 |
| CAM |
NBA |
CAC |
HACB |
298.1 |
300.1 |
| CAZ |
CAM |
NBA |
HAM |
119.5 |
120.0 |
| CAZ |
CAM |
NBA |
HAMA |
240.5 |
240.0 |
| HAM |
CAM |
NBA |
HAMA |
121.0 |
120.0 |
| CAZ |
CAM |
HAM |
NBA |
243.1 |
240.0 |
| CAZ |
CAM |
HAM |
HAMA |
121.5 |
120.0 |
| NBA |
CAM |
HAM |
HAMA |
238.5 |
240.0 |
| CAZ |
CAM |
HAMA |
NBA |
117.0 |
120.0 |
| CAZ |
CAM |
HAMA |
HAM |
238.5 |
240.0 |
| NBA |
CAM |
HAMA |
HAM |
121.5 |
120.0 |
| CAT |
NAN |
CAJ |
HAJ |
181.4 |
180.0 |
| NAP |
CAW |
CAT |
NAN |
4.7 |
359.5 |
| CAV |
NAO |
CAK |
CAY |
358.3 |
0.7 |
| CAV |
NAO |
CAK |
HAK |
178.4 |
180.7 |
| NAO |
CAV |
CAL |
HAL |
178.1 |
181.0 |
| NAO |
CAV |
NAQ |
HNAQ |
360.0 |
184.4 |
| NAP |
CAU |
CAJ |
HAJ |
177.5 |
180.3 |
| CAU |
NAP |
CAW |
OAR |
180.8 |
180.1 |
| CAU |
NAP |
CAW |
CAT |
354.1 |
0.8 |
| NAQ |
CAV |
CAL |
HAL |
1.7 |
359.9 |
| CAU |
NAQ |
CAV |
HNAQ |
180.0 |
180.0 |
| NAQ |
CAU |
CAJ |
HAJ |
1.4 |
0.3 |
| NAO |
CAV |
NAQ |
CAU |
180.0 |
4.4 |
| NAQ |
CAU |
NAP |
CAW |
180.7 |
179.5 |
| CAV |
NAQ |
CAU |
HNAQ |
180.0 |
180.0 |
| CAA |
CAZ |
OAR |
CAW |
278.3 |
270.1 |
| NAP |
CAW |
OAR |
CAT |
173.4 |
180.7 |
| OAR |
CAZ |
CAA |
HAA |
61.2 |
180.0 |
| OAR |
CAZ |
CAA |
HAAA |
181.3 |
300.0 |
| OAR |
CAZ |
CAA |
HAAB |
301.2 |
60.0 |
| CAA |
CAZ |
OAR |
CAM |
113.0 |
120.0 |
| CAA |
CAZ |
OAR |
HAZ |
238.0 |
240.0 |
| OAR |
CAZ |
CAM |
NBA |
297.8 |
295.1 |
| OAR |
CAZ |
CAM |
HAM |
57.3 |
55.1 |
| OAR |
CAZ |
CAM |
HAMA |
178.3 |
175.0 |
| CL |
CAS |
CAY |
CAH |
180.0 |
180.1 |
| CAY |
CAS |
CAH |
HAH |
180.0 |
180.0 |
| CAS |
CAY |
CAK |
HAK |
0.2 |
360.0 |
| CAK |
CAY |
CAS |
CAX |
180.2 |
179.7 |
| NAP |
CAW |
CAT |
OAR |
186.6 |
179.3 |
| CAY |
CAX |
CAI |
HAI |
180.1 |
180.5 |
| CAX |
CAY |
CAK |
HAK |
180.4 |
179.7 |
| CAK |
CAY |
CAX |
CAS |
179.8 |
180.2 |
| CAY |
CAX |
CAL |
HAL |
180.7 |
179.4 |
| HAZ |
CAZ |
CAA |
HAA |
298.4 |
60.0 |
| HAZ |
CAZ |
CAA |
HAAA |
58.5 |
180.0 |
| HAZ |
CAZ |
CAA |
HAAB |
178.5 |
300.0 |
| CAA |
CAZ |
HAZ |
CAM |
246.3 |
240.0 |
| CAA |
CAZ |
HAZ |
OAR |
120.5 |
120.0 |
| HAZ |
CAZ |
CAM |
NBA |
63.5 |
55.1 |
| HAZ |
CAZ |
CAM |
HAM |
183.0 |
175.0 |
| HAZ |
CAZ |
CAM |
HAMA |
304.0 |
295.0 |