PDB Chemical Component YM7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YM7

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CAI	CAG	1.504	1.531
CAI	CAW	1.472	1.532
CAG	NAP	1.456	1.468
NAP	CAH	1.465	1.469
CAH	CAJ	1.500	1.530
CAJ	CAW	1.460	1.531
CAW	CAK	1.572	1.530
CAK	NAQ	1.449	1.466
NAQ	C6	1.490	1.386
C6	C5	1.469	1.392
C6	N1	1.339	1.332
C5	C4	1.426	1.390
N1	C2	1.361	1.318
C2	N3	1.425	1.317
N3	C4	1.317	1.332
C4	NAR	1.376	1.389
NAR	CAT	1.476	1.387
CAT	CAE	1.415	1.397
CAT	NAO	1.360	1.328
CAE	NAN	1.351	1.316
NAN	CAS	1.333	1.333
CAS	CAB	1.491	1.432
CAS	CAD	1.438	1.396
CAB	NAA	1.138	1.136
CAD	NAO	1.342	1.321
CAI	HAI1	1.100	1.090
CAI	HAI2	1.100	1.090
CAG	HAG1	1.100	1.090
CAG	HAG2	1.100	1.090
CAW	HAW	1.100	1.089
NAP	HAP	1.000	1.009
CAH	HAH1	1.100	1.090
CAH	HAH2	1.100	1.090
CAJ	HAJ1	1.100	1.090
CAJ	HAJ2	1.100	1.090
CAK	HAK1	1.100	1.090
CAK	HAK2	1.100	1.090
NAQ	HAQ	1.000	0.970
C5	H5	1.080	1.080
C2	H2	1.080	1.080
NAR	HAR	1.000	0.970
CAE	HAE	1.080	1.080
CAD	HAD	1.080	1.080

Bond Angles for YM7

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CAG	CAI	CAW	112.0	109.2
CAI	CAG	NAP	113.0	109.5
CAG	CAI	HAI1	108.8	109.5
CAG	CAI	HAI2	108.8	109.5
CAI	CAG	HAG1	108.6	109.4
CAI	CAG	HAG2	108.6	109.4
CAI	CAW	CAJ	112.2	109.2
CAI	CAW	CAK	109.9	109.5
CAW	CAI	HAI1	108.8	109.5
CAW	CAI	HAI2	108.8	109.5
CAI	CAW	HAW	108.9	109.5
CAG	NAP	CAH	112.6	111.2
NAP	CAG	HAG1	108.6	109.5
NAP	CAG	HAG2	108.6	109.5
CAG	NAP	HAP	108.7	111.0
NAP	CAH	CAJ	111.9	109.5
CAH	NAP	HAP	108.7	111.0
NAP	CAH	HAH1	108.9	109.4
NAP	CAH	HAH2	108.9	109.5
CAH	CAJ	CAW	112.0	109.3
CAJ	CAH	HAH1	108.9	109.5
CAJ	CAH	HAH2	108.9	109.5
CAH	CAJ	HAJ1	108.8	109.5
CAH	CAJ	HAJ2	108.8	109.5
CAJ	CAW	CAK	108.8	109.5
CAJ	CAW	HAW	109.1	109.6
CAW	CAJ	HAJ1	108.8	109.5
CAW	CAJ	HAJ2	108.8	109.5
CAW	CAK	NAQ	117.3	109.4
CAK	CAW	HAW	107.7	109.6
CAW	CAK	HAK1	107.5	109.5
CAW	CAK	HAK2	107.5	109.5
CAK	NAQ	C6	119.8	120.0
NAQ	CAK	HAK1	107.5	109.5
NAQ	CAK	HAK2	107.5	109.4
CAK	NAQ	HAQ	106.8	120.0
NAQ	C6	C5	120.1	120.5
NAQ	C6	N1	120.0	120.5
C6	NAQ	HAQ	106.8	120.0
C5	C6	N1	119.9	119.0
C6	C5	C4	118.5	118.3
C6	C5	H5	120.7	120.8
C6	N1	C2	119.8	120.9
C5	C4	N3	119.1	119.1
C5	C4	NAR	121.7	120.5
C4	C5	H5	120.8	120.9
N1	C2	N3	121.5	121.9
N1	C2	H2	119.3	119.0
C2	N3	C4	121.2	120.9
N3	C2	H2	119.3	119.0
N3	C4	NAR	119.2	120.5
C4	NAR	CAT	123.5	120.0
C4	NAR	HAR	118.3	120.0
NAR	CAT	CAE	119.4	120.0
NAR	CAT	NAO	120.4	120.0
CAT	NAR	HAR	118.3	120.0
CAE	CAT	NAO	120.1	120.0
CAT	CAE	NAN	120.4	120.0
CAT	CAE	HAE	119.8	120.0
CAT	NAO	CAD	119.3	120.0
CAE	NAN	CAS	119.8	120.0
NAN	CAE	HAE	119.8	119.9
NAN	CAS	CAB	120.1	120.1
NAN	CAS	CAD	120.3	119.9
CAB	CAS	CAD	119.6	120.0
CAS	CAB	NAA	179.4	179.9
CAS	CAD	NAO	120.1	120.0
CAS	CAD	HAD	120.0	120.0
NAO	CAD	HAD	119.9	120.0
HAI1	CAI	HAI2	109.5	109.6
HAG1	CAG	HAG2	109.5	109.5
HAH1	CAH	HAH2	109.4	109.5
HAJ1	CAJ	HAJ2	109.5	109.5
HAK1	CAK	HAK2	109.5	109.5

Torsion Angles for YM7

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CAG	CAI	CAW	CAJ	308.1	302.3
CAG	CAI	CAW	CAK	186.9	182.4
CAW	CAI	CAG	HAI1	239.6	240.1
CAW	CAI	CAG	HAI2	120.4	119.9
CAG	CAI	CAW	HAW	69.0	62.3
CAI	CAG	NAP	CAH	308.8	298.2
NAP	CAG	CAI	HAG1	239.5	240.0
NAP	CAG	CAI	HAG2	120.5	120.0
CAI	CAG	NAP	HAP	69.3	62.4
HAI1	CAI	CAG	HAI2	240.7	239.8
HAG1	CAG	CAI	HAG2	241.0	240.0
CAW	CAI	CAG	NAP	50.7	59.2
CAG	CAI	CAW	HAI1	120.4	119.9
CAG	CAI	CAW	HAI2	239.6	240.1
CAW	CAI	CAG	HAG1	171.2	179.2
CAW	CAI	CAG	HAG2	290.2	299.1
CAH	CAJ	CAW	CAI	53.7	57.7
CAJ	CAW	CAI	CAK	121.2	119.9
CAJ	CAW	CAI	HAW	239.1	240.1
CAI	CAW	CAJ	HAJ1	293.4	297.7
CAI	CAW	CAJ	HAJ2	174.1	177.6
CAI	CAW	CAK	NAQ	155.2	185.0
CAK	CAW	CAI	HAW	117.8	120.2
CAI	CAW	CAK	HAK1	276.3	305.0
CAI	CAW	CAK	HAK2	34.0	65.0
HAI1	CAI	CAW	HAI2	119.3	120.2
NAP	CAG	CAI	CAW	50.7	59.2
NAP	CAG	CAI	HAI1	171.0	179.1
NAP	CAG	CAI	HAI2	290.3	299.3
CAI	CAG	NAP	HAG1	120.5	120.0
CAI	CAG	NAP	HAG2	239.5	240.0
CAG	NAP	CAH	CAJ	52.4	61.8
CAH	NAP	CAG	HAP	239.5	235.8
CAG	NAP	CAH	HAH1	172.8	181.8
CAG	NAP	CAH	HAH2	292.1	301.8
HAG1	CAG	NAP	HAG2	119.0	120.0
CAH	NAP	CAG	HAG1	188.3	178.2
CAH	NAP	CAG	HAG2	69.3	58.2
CAG	NAP	CAH	HAP	120.5	124.2
NAP	CAH	CAJ	CAW	306.2	300.8
CAJ	CAH	NAP	HAH1	239.6	240.0
CAJ	CAH	NAP	HAH2	120.4	120.0
NAP	CAH	CAJ	HAJ1	66.6	60.8
NAP	CAH	CAJ	HAJ2	185.8	180.9
HAH1	CAH	NAP	HAH2	240.8	240.0
CAI	CAW	CAJ	CAH	53.7	57.7
CAJ	CAH	NAP	HAP	292.0	297.6
NAP	CAH	CAJ	HAH1	120.4	120.0
NAP	CAH	CAJ	HAH2	239.6	240.0
CAH	CAJ	CAW	CAK	175.6	177.5
CAH	CAJ	CAW	HAW	292.9	297.8
CAW	CAJ	CAH	HAJ1	239.6	240.0
CAW	CAJ	CAH	HAJ2	120.4	119.9
HAH1	CAH	CAJ	HAH2	119.2	120.0
HAJ1	CAJ	CAH	HAJ2	240.8	239.9
CAI	CAW	CAJ	CAK	238.1	240.2
CAJ	CAW	CAI	HAI1	187.7	182.4
CAJ	CAW	CAI	HAI2	68.4	62.2
CAI	CAW	CAJ	HAW	120.8	119.9
CAW	CAJ	CAH	HAH1	185.8	180.8
CAW	CAJ	CAH	HAH2	66.6	60.8
CAH	CAJ	CAW	HAJ1	120.3	119.9
CAH	CAJ	CAW	HAJ2	239.6	240.1
CAJ	CAW	CAK	NAQ	31.9	65.3
CAK	CAW	CAJ	HAW	242.7	239.8
CAJ	CAW	CAK	HAK1	153.0	185.3
CAJ	CAW	CAK	HAK2	270.8	305.4
HAJ1	CAJ	CAW	HAJ2	119.3	120.1
CAI	CAW	CAK	CAJ	123.2	119.7
CAK	CAW	CAI	HAI1	66.5	62.5
CAK	CAW	CAI	HAI2	307.2	302.3
CAI	CAW	CAK	HAW	241.4	239.9
CAJ	CAW	CAK	HAW	118.2	120.2
CAK	CAW	CAJ	HAJ1	55.3	57.6
CAK	CAW	CAJ	HAJ2	296.0	297.5
CAW	CAK	NAQ	C6	144.2	180.0
NAQ	CAK	CAW	HAK1	238.9	240.0
NAQ	CAK	CAW	HAK2	121.1	120.0
CAW	CAK	NAQ	HAQ	265.7	0.0
HAK1	CAK	CAW	HAK2	242.2	240.0
NAQ	CAK	CAW	HAW	273.8	305.1
CAW	CAK	NAQ	HAK1	121.1	120.0
CAW	CAK	NAQ	HAK2	238.9	240.0
CAK	NAQ	C6	C5	163.5	0.0
CAK	NAQ	C6	N1	344.0	179.7
C6	NAQ	CAK	HAQ	238.5	180.0
HAK1	CAK	NAQ	HAK2	117.8	120.0
C6	NAQ	CAK	HAK1	23.1	60.0
C6	NAQ	CAK	HAK2	265.3	300.0
CAK	NAQ	C6	HAQ	121.5	180.0
C5	C6	NAQ	N1	179.5	180.3
NAQ	C6	C5	C4	180.5	180.0
NAQ	C6	C5	H5	0.5	360.0
NAQ	C6	N1	C2	179.7	180.0
NAQ	C6	C5	N1	180.5	179.7
C5	C6	NAQ	HAQ	42.0	180.0
C5	C6	N1	C2	0.2	359.7
C6	C5	C4	N3	0.0	360.0
C6	C5	C4	NAR	180.7	180.0
C4	C5	C6	H5	180.0	180.0
NAQ	C6	N1	C5	179.5	180.3
N1	C6	NAQ	HAQ	222.5	359.7
N1	C6	C5	C4	359.9	0.3
N1	C6	C5	H5	179.9	180.3
C6	N1	C2	N3	359.7	0.0
C6	N1	C2	H2	179.7	180.0
C4	C5	C6	N1	359.9	0.3
C6	C5	C4	H5	180.0	180.0
C2	N3	C4	C5	359.9	359.8
N3	C4	C5	NAR	179.3	180.0
C5	C4	NAR	CAT	6.9	174.7
C5	C4	NAR	HAR	186.9	354.8
N1	C2	N3	C4	0.3	0.2
N3	C2	N1	H2	180.0	180.0
C5	C4	N3	C2	359.9	359.8
N1	C2	N3	H2	180.0	180.0
C2	N3	C4	NAR	179.2	179.8
C5	C4	N3	NAR	180.6	180.0
N3	C4	C5	H5	180.0	180.0
C4	N3	C2	H2	180.3	180.2
N3	C4	NAR	CAT	187.5	354.7
N3	C4	NAR	HAR	7.5	174.8
C5	C4	NAR	N3	179.3	180.0
NAR	C4	C5	H5	0.7	360.0
C4	NAR	CAT	CAE	199.5	185.2
C4	NAR	CAT	NAO	22.5	5.1
CAT	NAR	C4	HAR	180.0	179.9
C4	NAR	CAT	HAR	180.0	180.1
CAE	CAT	NAR	NAO	177.0	180.2
NAR	CAT	CAE	NAN	182.6	180.0
NAR	CAT	CAE	HAE	2.7	0.1
NAR	CAT	NAO	CAD	177.3	179.7
NAR	CAT	CAE	NAO	183.0	179.8
CAE	CAT	NAR	HAR	19.5	5.1
CAE	CAT	NAO	CAD	0.3	359.5
CAT	CAE	NAN	CAS	0.7	0.0
NAN	CAE	CAT	HAE	180.0	180.0
NAR	CAT	NAO	CAE	176.9	180.2
NAO	CAT	NAR	HAR	202.5	184.9
NAO	CAT	CAE	NAN	359.6	0.2
NAO	CAT	CAE	HAE	179.6	180.3
CAS	CAD	NAO	CAT	359.4	0.5
CAT	NAO	CAD	HAD	179.4	180.3
NAN	CAE	CAT	NAO	359.6	0.2
CAT	CAE	NAN	HAE	180.0	180.0
CAE	NAN	CAS	CAB	179.6	180.0
CAE	NAN	CAS	CAD	359.1	360.0
CAS	NAN	CAE	HAE	180.6	180.0
CAB	CAS	NAN	CAD	180.5	180.1
NAN	CAS	CAB	NAA	245.5	258.3
NAN	CAS	CAD	NAO	0.9	359.8
NAN	CAS	CAD	HAD	180.9	180.0
NAN	CAS	CAB	CAD	179.5	179.9
CAB	CAS	CAD	NAO	180.4	179.7
CAB	CAS	CAD	HAD	0.4	359.9
CAT	NAO	CAD	CAS	359.4	0.5
NAN	CAS	CAD	CAB	180.5	180.1
CAD	CAS	CAB	NAA	65.9	78.4
NAO	CAD	CAS	HAD	180.0	179.8
NAA	CAB	CAS	CAD	65.9	78.4
CAS	CAD	NAO	HAD	180.0	180.2
CAG	CAI	HAI1	CAW	237.7	240.2
HAI1	CAI	CAG	NAP	171.0	179.1
CAG	CAI	HAI1	HAI2	118.8	120.1
HAI1	CAI	CAG	HAG1	291.6	299.1
HAI1	CAI	CAG	HAG2	50.5	59.1
HAI1	CAI	CAW	CAJ	187.7	182.4
HAI1	CAI	CAW	CAK	66.5	62.5
CAW	CAI	HAI1	HAI2	241.2	239.8
HAI1	CAI	CAW	HAW	308.6	302.4
CAG	CAI	HAI2	CAW	122.3	119.7
HAI2	CAI	CAG	NAP	290.3	299.3
CAG	CAI	HAI2	HAI1	241.2	239.9
HAI2	CAI	CAG	HAG1	50.8	59.3
HAI2	CAI	CAG	HAG2	169.8	179.2
HAI2	CAI	CAW	CAJ	68.4	62.2
HAI2	CAI	CAW	CAK	307.2	302.3
CAW	CAI	HAI2	HAI1	118.8	120.2
HAI2	CAI	CAW	HAW	189.4	182.2
HAG1	CAG	CAI	CAW	171.2	179.2
CAI	CAG	HAG1	NAP	236.8	240.0
HAG1	CAG	CAI	HAI1	291.6	299.1
HAG1	CAG	CAI	HAI2	50.8	59.3
CAI	CAG	HAG1	HAG2	118.4	120.0
HAG1	CAG	NAP	CAH	188.3	178.2
NAP	CAG	HAG1	HAG2	241.6	240.0
HAG1	CAG	NAP	HAP	308.7	302.4
HAG2	CAG	CAI	CAW	290.2	299.1
CAI	CAG	HAG2	NAP	123.2	120.0
HAG2	CAG	CAI	HAI1	50.5	59.1
HAG2	CAG	CAI	HAI2	169.8	179.2
CAI	CAG	HAG2	HAG1	241.6	240.0
HAG2	CAG	NAP	CAH	69.3	58.2
NAP	CAG	HAG2	HAG1	118.4	120.0
HAG2	CAG	NAP	HAP	189.8	182.4
CAI	CAW	HAW	CAJ	237.2	240.3
CAI	CAW	HAW	CAK	119.2	120.1
HAW	CAW	CAI	HAI1	308.6	302.4
HAW	CAW	CAI	HAI2	189.4	182.2
CAJ	CAW	HAW	CAK	242.0	239.8
HAW	CAW	CAJ	HAJ1	172.6	177.8
HAW	CAW	CAJ	HAJ2	53.3	57.7
HAW	CAW	CAK	NAQ	273.8	305.1
HAW	CAW	CAK	HAK1	34.8	65.1
HAW	CAW	CAK	HAK2	152.6	185.1
CAG	NAP	HAP	CAH	237.1	235.7
HAP	NAP	CAG	HAG1	308.7	302.4
HAP	NAP	CAG	HAG2	189.8	182.4
HAP	NAP	CAH	CAJ	292.0	297.6
HAP	NAP	CAH	HAH1	52.4	57.6
HAP	NAP	CAH	HAH2	171.6	177.6
NAP	CAH	HAH1	CAJ	237.8	240.0
HAH1	CAH	NAP	HAP	52.4	57.6
NAP	CAH	HAH1	HAH2	118.9	120.0
HAH1	CAH	CAJ	CAW	185.8	180.8
CAJ	CAH	HAH1	HAH2	241.1	240.0
HAH1	CAH	CAJ	HAJ1	306.2	300.8
HAH1	CAH	CAJ	HAJ2	65.4	60.9
NAP	CAH	HAH2	CAJ	122.2	120.0
HAH2	CAH	NAP	HAP	171.6	177.6
NAP	CAH	HAH2	HAH1	241.1	240.0
HAH2	CAH	CAJ	CAW	66.6	60.8
CAJ	CAH	HAH2	HAH1	118.9	120.0
HAH2	CAH	CAJ	HAJ1	186.9	180.8
HAH2	CAH	CAJ	HAJ2	306.2	300.9
CAH	CAJ	HAJ1	CAW	237.7	240.2
HAJ1	CAJ	CAH	HAH1	306.2	300.8
HAJ1	CAJ	CAH	HAH2	186.9	180.8
CAH	CAJ	HAJ1	HAJ2	118.8	120.1
HAJ1	CAJ	CAW	CAK	55.3	57.6
HAJ1	CAJ	CAW	HAW	172.6	177.8
CAW	CAJ	HAJ1	HAJ2	241.1	239.9
CAH	CAJ	HAJ2	CAW	122.3	119.8
HAJ2	CAJ	CAH	HAH1	65.4	60.9
HAJ2	CAJ	CAH	HAH2	306.2	300.9
CAH	CAJ	HAJ2	HAJ1	241.2	239.9
HAJ2	CAJ	CAW	CAK	296.0	297.5
HAJ2	CAJ	CAW	HAW	53.3	57.7
CAW	CAJ	HAJ2	HAJ1	118.8	120.1
CAW	CAK	HAK1	NAQ	233.0	240.0
HAK1	CAK	CAW	HAW	34.8	65.1
CAW	CAK	HAK1	HAK2	116.5	120.0
HAK1	CAK	NAQ	C6	23.1	60.0
NAQ	CAK	HAK1	HAK2	243.5	240.0
HAK1	CAK	NAQ	HAQ	144.6	240.0
CAW	CAK	HAK2	NAQ	127.1	120.0
HAK2	CAK	CAW	HAW	152.6	185.1
CAW	CAK	HAK2	HAK1	243.5	240.0
HAK2	CAK	NAQ	C6	265.3	300.0
NAQ	CAK	HAK2	HAK1	116.5	120.0
HAK2	CAK	NAQ	HAQ	26.8	120.0
CAK	NAQ	HAQ	C6	230.6	180.0
HAQ	NAQ	CAK	HAK1	144.6	240.0
HAQ	NAQ	CAK	HAK2	26.8	120.0
HAQ	NAQ	C6	C5	42.0	180.0
HAQ	NAQ	C6	N1	222.5	359.7
H5	C5	C6	N1	179.9	180.3
C6	C5	H5	C4	180.0	180.0
H5	C5	C4	N3	180.0	180.0
H5	C5	C4	NAR	0.7	360.0
N1	C2	H2	N3	180.0	180.0
H2	C2	N3	C4	180.3	180.2
C4	NAR	HAR	CAT	180.0	179.9
HAR	NAR	CAT	CAE	19.5	5.1
HAR	NAR	CAT	NAO	202.5	184.9
HAE	CAE	CAT	NAO	179.6	180.3
CAT	CAE	HAE	NAN	180.0	180.0
HAE	CAE	NAN	CAS	180.6	180.0
CAS	CAD	HAD	NAO	180.0	179.8