PDB Chemical Component YKE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YKE

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.389	1.398
C1	C4	1.395	1.356
C2	C3	1.386	1.357
C3	C6	1.384	1.411
C4	C5	1.400	1.414
C5	C6	1.425	1.475
C5	C8	1.499	1.383
C6	C7	1.467	1.393
C7	C9	1.466	1.467
C7	N23	1.445	1.392
C8	C9	1.398	1.417
C8	C13	1.418	1.512
C9	C10	1.382	1.391
C10	C11	1.389	1.400
C11	C12	1.384	1.341
C12	C13	1.402	1.513
C13	C14	1.469	1.507
C14	N15	1.331	1.303
C14	N16	1.349	1.359
N15	C18	1.353	1.352
N16	C17	1.386	1.379
C17	C18	1.412	1.409
C17	C22	1.391	1.385
C18	C19	1.410	1.400
C19	C20	1.379	1.366
C20	N21	1.331	1.323
N21	C22	1.328	1.318
N23	C24	1.333	1.348
C24	C25	1.491	1.475
C24	O26	1.223	1.217
C25	C27	1.405	1.389
C25	C30	1.430	1.460
C27	C29	1.405	1.389
C28	C29	1.371	1.360
C28	C31	1.437	1.407
C30	C31	1.429	1.415
C30	C35	1.418	1.404
C31	N32	1.338	1.336
N32	C33	1.313	1.311
C33	C34	1.385	1.393
C34	C35	1.390	1.366
C1	H1	1.080	1.081
C2	H2	1.080	1.080
C4	H4	1.080	1.080
C3	H3	1.080	1.080
N23	H23	1.000	0.970
C10	H10	1.080	1.080
C11	H11	1.080	1.080
C12	H12	1.080	1.080
C13	H13	1.100	1.090
N16	H16	1.000	0.970
C22	H22	1.080	1.081
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C27	H27	1.080	1.080
C29	H29	1.080	1.080
C28	H28	1.080	1.080
C35	H35	1.080	1.080
C33	H33	1.080	1.080
C34	H34	1.080	1.081

Bond Angles for YKE

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C4	122.1	121.9
C1	C2	C3	119.9	121.7
C2	C1	H1	118.9	119.1
C1	C2	H2	120.0	119.2
C1	C4	C5	118.6	119.7
C4	C1	H1	119.0	119.0
C1	C4	H4	120.7	120.2
C2	C3	C6	118.5	119.7
C3	C2	H2	120.1	119.1
C2	C3	H3	120.7	120.2
C3	C6	C5	121.7	118.7
C3	C6	C7	133.0	133.6
C6	C3	H3	120.7	120.2
C4	C5	C6	118.2	118.4
C4	C5	C8	132.0	133.4
C5	C4	H4	120.7	120.2
C6	C5	C8	109.8	108.2
C5	C6	C7	98.7	107.7
C5	C8	C9	109.5	109.0
C5	C8	C13	133.5	132.9
C6	C7	C9	113.1	107.4
C6	C7	N23	128.0	126.3
C9	C7	N23	118.7	126.3
C7	C9	C8	99.9	107.8
C7	C9	C10	131.9	132.1
C7	N23	C24	138.3	120.0
C7	N23	H23	110.9	120.0
C9	C8	C13	117.0	118.2
C8	C9	C10	123.2	120.1
C8	C13	C12	119.7	117.3
C8	C13	C14	124.0	107.9
C8	C13	H13	38.2	107.9
C9	C10	C11	118.7	122.9
C9	C10	H10	120.6	118.6
C10	C11	C12	120.2	122.5
C11	C10	H10	120.7	118.5
C10	C11	H11	119.9	118.7
C11	C12	C13	121.0	119.1
C12	C11	H11	119.9	118.8
C11	C12	H12	119.5	120.4
C12	C13	C14	116.3	107.9
C13	C12	H12	119.5	120.5
C12	C13	H13	151.8	107.9
C13	C14	N15	124.3	124.9
C13	C14	N16	124.8	124.9
C14	C13	H13	88.5	107.6
N15	C14	N16	110.9	110.1
C14	N15	C18	108.9	109.6
C14	N16	C17	106.5	107.3
C14	N16	H16	126.8	126.4
N15	C18	C17	106.6	107.1
N15	C18	C19	133.7	134.8
N16	C17	C18	107.1	105.9
N16	C17	C22	133.8	135.1
C17	N16	H16	126.8	126.3
C18	C17	C22	119.1	119.0
C17	C18	C19	119.7	118.1
C17	C22	N21	118.7	120.2
C17	C22	H22	120.6	119.9
C18	C19	C20	117.4	118.8
C18	C19	H19	121.3	120.5
C19	C20	N21	121.0	121.5
C20	C19	H19	121.3	120.7
C19	C20	H20	119.5	119.3
C20	N21	C22	124.0	122.4
N21	C20	H20	119.5	119.3
N21	C22	H22	120.7	119.9
N23	C24	C25	113.9	120.0
N23	C24	O26	122.3	120.0
C24	N23	H23	110.8	120.0
C25	C24	O26	123.2	120.0
C24	C25	C27	117.3	120.6
C24	C25	C30	123.6	120.8
C27	C25	C30	119.1	118.6
C25	C27	C29	121.5	120.4
C25	C27	H27	119.2	119.8
C25	C30	C31	118.2	119.2
C25	C30	C35	122.4	121.6
C27	C29	C28	121.3	121.9
C29	C27	H27	119.2	119.8
C27	C29	H29	119.3	119.0
C29	C28	C31	118.5	120.8
C28	C29	H29	119.4	119.0
C29	C28	H28	120.7	119.6
C28	C31	C30	121.3	119.1
C28	C31	N32	120.0	121.2
C31	C28	H28	120.7	119.6
C31	C30	C35	119.4	119.3
C30	C31	N32	118.6	119.7
C30	C35	C34	118.8	118.1
C30	C35	H35	120.6	120.9
C31	N32	C33	121.2	121.3
N32	C33	C34	124.3	121.8
N32	C33	H33	117.8	119.1
C33	C34	C35	117.3	119.9
C34	C33	H33	117.8	119.1
C33	C34	H34	121.4	120.1
C34	C35	H35	120.6	120.9
C35	C34	H34	121.4	120.1

Torsion Angles for YKE

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C4	C5	357.1	0.0
C4	C1	C2	H1	180.0	180.3
C2	C1	C4	H4	177.1	180.0
C1	C2	C3	C6	4.9	359.9
C3	C2	C1	H2	180.0	180.1
C1	C2	C3	H3	184.9	180.0
C4	C1	C2	C3	2.0	0.0
C2	C1	C4	H1	180.0	179.7
C4	C1	C2	H2	182.0	179.9
C1	C4	C5	C6	357.1	360.0
C1	C4	C5	C8	178.8	180.0
C5	C4	C1	H4	180.0	180.0
C3	C2	C1	C4	2.0	0.0
C3	C2	C1	H1	182.1	179.8
C1	C2	C3	H2	180.0	179.9
C2	C3	C6	C5	349.0	0.1
C2	C3	C6	C7	203.9	180.0
C6	C3	C2	H3	180.0	179.9
C6	C3	C2	H2	184.9	180.0
C2	C3	C6	H3	180.0	180.1
C4	C5	C6	C3	10.1	360.0
C3	C6	C5	C8	188.7	180.0
C5	C6	C3	C7	145.0	180.1
C3	C6	C7	C9	180.0	180.0
C3	C6	C7	N23	355.3	0.0
C5	C4	C1	H1	177.0	180.3
C1	C4	C5	H4	180.0	180.0
C3	C6	C5	C4	10.1	360.0
C6	C5	C4	C8	178.2	180.0
C4	C5	C6	C7	165.0	180.0
C4	C5	C8	C9	177.6	180.0
C4	C5	C8	C13	359.2	360.0
C3	C6	C5	C7	205.1	180.0
C5	C6	C3	H3	169.0	180.0
C4	C5	C6	C8	181.4	180.0
C6	C5	C4	H4	177.0	180.0
C6	C5	C8	C9	359.2	0.0
C6	C5	C8	C13	180.9	180.0
C5	C6	C7	C9	29.6	360.0
C5	C6	C7	N23	204.9	180.0
C4	C5	C8	C6	178.4	180.0
C8	C5	C4	H4	358.8	0.0
C8	C5	C6	C7	343.6	360.0
C7	C9	C8	C5	17.6	360.0
C9	C8	C5	C13	178.3	180.0
C5	C8	C9	C10	175.4	180.0
C5	C8	C13	C12	182.1	180.0
C5	C8	C13	C14	0.9	302.0
C5	C8	C13	H13	25.8	58.0
C3	C6	C7	C5	150.4	180.1
C7	C6	C3	H3	24.0	359.9
C7	C6	C5	C8	343.6	360.0
C9	C7	C6	N23	184.7	180.0
C6	C7	C9	C8	329.6	0.0
C6	C7	C9	C10	174.7	180.0
C6	C7	N23	C24	357.6	121.6
C6	C7	N23	H23	177.6	301.6
C5	C8	C9	C7	17.6	360.0
C6	C7	C9	N23	175.8	180.0
C9	C7	N23	C24	172.7	301.6
C9	C7	N23	H23	352.7	121.6
C7	C9	C8	C13	196.3	180.0
C8	C9	C7	C10	154.8	180.0
C7	C9	C10	C11	155.4	180.0
C7	C9	C10	H10	335.4	360.0
C6	C7	N23	C9	184.9	180.0
N23	C7	C9	C8	153.8	180.0
N23	C7	C9	C10	358.9	0.0
C7	N23	C24	C25	152.8	184.9
C7	N23	C24	O26	323.8	4.9
C24	N23	C7	H23	180.0	180.0
C5	C8	C9	C13	181.4	180.0
C8	C9	C7	N23	153.8	180.0
C7	C9	C8	C10	202.2	180.0
C9	C8	C13	C12	3.8	360.0
C9	C8	C13	C14	182.7	122.0
C9	C8	C13	H13	207.6	238.0
C8	C9	C10	C11	5.5	360.0
C8	C9	C10	H10	185.5	179.9
C5	C8	C13	C9	178.2	180.0
C13	C8	C9	C10	354.0	0.0
C11	C12	C13	C8	358.5	360.0
C12	C13	C8	C14	181.2	238.0
C8	C13	C12	H12	178.5	180.0
C12	C13	C8	H13	156.3	122.0
C8	C13	C14	N15	228.0	95.1
C8	C13	C14	N16	50.3	274.7
C14	C13	C8	H13	335.1	244.0
C10	C9	C7	N23	358.9	0.0
C7	C9	C10	C8	149.9	180.0
C10	C9	C8	C13	354.0	0.0
C9	C10	C11	C12	357.2	360.0
C11	C10	C9	H10	180.0	180.1
C9	C10	C11	H11	177.3	179.9
C9	C10	C11	H10	180.0	179.9
C10	C11	C12	C13	0.9	0.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	H12	180.9	180.0
C8	C13	C12	C11	358.5	360.0
C12	C11	C10	H10	177.2	180.1
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	C14	179.6	238.0
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	H13	30.3	122.0
C8	C13	C12	C14	178.9	121.9
C8	C13	C12	H13	328.2	238.0
C13	C12	C11	H11	180.9	180.1
C11	C12	C13	H12	180.0	180.0
C12	C13	C14	N15	46.8	222.6
C12	C13	C14	N16	229.1	42.2
C14	C13	C12	H13	149.3	116.1
C8	C13	C14	C12	181.2	232.4
C8	C13	C14	H13	15.1	116.2
C14	C13	C12	H12	359.6	58.0
C12	C13	C14	H13	194.0	243.7
N15	C14	C13	N16	177.7	180.4
C13	C14	N15	C18	183.6	179.9
C13	C14	N16	C17	176.1	180.1
C13	C14	N16	H16	356.1	0.1
C13	C14	N15	N16	182.0	179.7
N15	C14	C13	H13	212.9	338.9
N15	C14	N16	C17	358.2	359.8
N15	C14	N16	H16	178.1	179.7
C14	N15	C18	C17	359.4	359.8
C14	N15	C18	C19	179.8	180.0
C13	C14	N16	N15	178.0	180.3
N16	C14	C13	H13	35.1	158.5
N16	C14	N15	C18	1.6	0.3
C14	N16	C17	C18	1.4	0.1
C14	N16	C17	C22	181.1	180.1
C17	N16	C14	H16	180.0	180.0
C18	N15	C14	N16	1.6	0.3
N16	C17	C18	N15	359.5	0.0
N15	C18	C17	C22	179.8	180.1
C17	C18	N15	C19	179.6	179.8
N15	C18	C19	C20	181.5	180.0
N15	C18	C19	H19	1.5	360.0
C14	N16	C17	H16	180.0	180.0
N15	C18	C17	N16	359.5	0.0
C18	C17	N16	C22	180.4	180.0
N16	C17	C18	C19	179.2	179.9
N16	C17	C22	N21	178.5	179.8
N16	C17	C22	H22	358.5	359.9
N15	C18	C17	C19	180.3	180.1
N16	C17	C18	C22	179.7	180.0
C18	C17	N16	H16	181.4	180.1
C18	C17	C22	N21	358.1	359.7
C18	C17	C22	H22	178.1	179.9
C17	C18	C19	C20	1.9	0.2
C17	C18	C19	H19	181.9	180.2
N16	C17	C22	C18	180.4	180.0
C22	C17	N16	H16	1.1	0.1
C22	C17	C18	C19	359.5	359.9
C20	N21	C22	C17	3.1	0.5
N21	C22	C17	H22	180.0	179.8
N15	C18	C19	C17	179.6	179.8
C19	C18	C17	C22	359.5	359.9
C18	C19	C20	N21	359.1	360.0
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	H20	179.1	179.9
C18	C19	C20	H19	180.0	180.0
C19	C20	N21	C22	358.3	359.7
N21	C20	C19	H20	180.0	180.1
C17	C22	N21	C20	3.1	0.5
N21	C20	C19	H19	179.1	180.0
C19	C20	N21	H20	180.0	179.9
C20	N21	C22	H22	183.0	180.3
C17	C22	N21	H22	180.0	180.2
C22	N21	C20	H20	178.3	179.7
C7	N23	C24	H23	180.0	180.0
C25	C24	N23	O26	189.0	180.0
N23	C24	C25	C27	279.0	6.0
N23	C24	C25	C30	101.3	185.7
N23	C24	C25	O26	170.9	180.0
C25	C24	N23	H23	332.8	4.9
C27	C25	C24	C30	177.6	180.3
C24	C25	C27	C29	182.2	180.0
C24	C25	C27	H27	2.2	360.0
C24	C25	C30	C31	177.0	180.0
C24	C25	C30	C35	357.3	0.1
N23	C24	O26	C25	189.8	180.0
O26	C24	N23	H23	143.8	184.9
O26	C24	C25	C27	108.1	186.0
O26	C24	C25	C30	290.4	5.7
C27	C25	C24	O26	108.1	186.0
C24	C25	C27	C30	182.2	179.7
C27	C25	C30	C31	359.4	359.7
C27	C25	C30	C35	179.7	179.7
C25	C27	C29	C28	359.9	360.0
C29	C27	C25	H27	180.0	180.0
C25	C27	C29	H29	179.9	180.0
C30	C25	C24	O26	290.4	5.7
C24	C25	C30	C27	177.6	180.3
C30	C25	C27	C29	359.9	0.3
C30	C25	C27	H27	179.9	180.3
C28	C31	C30	C25	1.4	0.0
C31	C30	C25	C35	179.7	179.9
C25	C30	C31	N32	179.8	180.3
C25	C30	C35	C34	175.8	180.0
C25	C30	C35	H35	355.8	359.9
C29	C27	C25	C30	359.9	0.3
C25	C27	C29	H27	180.0	180.0
C27	C29	C28	C31	0.8	359.7
C28	C29	C27	H29	180.0	180.0
C27	C29	C28	H28	180.8	179.9
C28	C29	C27	H27	180.0	180.0
C27	C29	C28	H29	180.0	180.0
C29	C28	C31	C30	358.5	0.3
C29	C28	C31	N32	180.1	180.0
C31	C28	C29	H28	180.0	179.8
C25	C30	C31	C28	1.4	0.0
C31	C28	C29	H29	180.9	179.7
C29	C28	C31	H28	180.0	180.2
C28	C31	C30	C35	181.1	180.0
C30	C31	C28	N32	178.4	180.3
C28	C31	N32	C33	183.9	180.0
C25	C30	C31	C35	180.3	180.1
C28	C31	C30	N32	181.6	179.7
C30	C31	C28	H28	178.5	180.0
C31	C30	C35	C34	356.0	0.0
C31	C30	C35	H35	176.1	180.0
C30	C31	N32	C33	5.5	359.7
C25	C30	C35	C31	179.7	179.9
C35	C30	C31	N32	359.5	0.3
C33	C34	C35	C30	3.5	359.7
C34	C35	C30	H35	180.0	180.0
C30	C35	C34	H34	183.5	180.0
C28	C31	N32	C30	178.4	180.3
N32	C31	C28	H28	0.1	359.7
N32	C31	C30	C35	359.5	0.3
C31	N32	C33	C34	353.7	360.0
C31	N32	C33	H33	173.7	180.0
N32	C33	C34	C35	1.6	0.3
C34	C33	N32	H33	180.0	180.0
N32	C33	C34	H34	181.5	180.0
C30	C35	C34	C33	3.5	359.7
N32	C33	C34	H33	180.0	180.0
C33	C34	C35	H35	183.5	179.7
C35	C34	C33	H34	180.0	180.3
C30	C35	C34	H35	180.0	180.0
C35	C34	C33	H33	181.6	180.3
C33	C34	C35	H34	180.0	179.7
C2	C1	H1	C4	180.0	180.3
H1	C1	C2	C3	182.1	179.8
H1	C1	C2	H2	2.1	359.7
H1	C1	C4	C5	177.0	180.3
H1	C1	C4	H4	357.1	0.2
H2	C2	C1	C4	182.0	179.9
C1	C2	H2	C3	180.0	180.1
H2	C2	C1	H1	2.1	359.7
H2	C2	C3	C6	184.9	180.0
H2	C2	C3	H3	4.9	0.1
C1	C4	H4	C5	180.0	180.0
H4	C4	C1	H1	357.1	0.2
H4	C4	C5	C6	177.0	180.0
H4	C4	C5	C8	358.8	0.0
C2	C3	H3	C6	180.0	179.9
H3	C3	C2	H2	4.9	0.1
H3	C3	C6	C5	169.0	180.0
H3	C3	C6	C7	24.0	359.9
C7	N23	H23	C24	180.0	180.0
H23	N23	C24	C25	332.8	4.9
H23	N23	C24	O26	143.8	184.9
C9	C10	H10	C11	180.0	180.1
H10	C10	C11	C12	177.2	180.1
H10	C10	C11	H11	357.3	0.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	357.3	0.0
H11	C11	C12	C13	180.9	180.1
H11	C11	C12	H12	0.9	0.1
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	0.9	0.1
H12	C12	C13	C14	359.6	58.0
H12	C12	C13	H13	210.3	302.0
C8	C13	H13	C12	47.7	127.6
C8	C13	H13	C14	200.5	243.8
C12	C13	H13	C14	152.7	116.2
H13	C13	C12	H12	210.3	302.0
H13	C13	C14	N15	212.9	338.9
H13	C13	C14	N16	35.1	158.5
C14	N16	H16	C17	180.0	180.1
H16	N16	C17	C18	181.4	180.1
H16	N16	C17	C22	1.1	0.1
C17	C22	H22	N21	180.0	179.8
C18	C19	H19	C20	180.0	180.0
H19	C19	C20	N21	179.1	180.0
H19	C19	C20	H20	359.1	360.0
C19	C20	H20	N21	180.0	180.1
H20	C20	C19	H19	359.1	360.0
H20	C20	N21	C22	178.3	179.7
H27	C27	C25	C30	179.9	180.3
C25	C27	H27	C29	180.0	180.0
H27	C27	C29	C28	180.0	180.0
H27	C27	C29	H29	359.9	0.0
C27	C29	H29	C28	180.0	180.0
H29	C29	C27	H27	359.9	0.0
H29	C29	C28	C31	180.9	179.7
H29	C29	C28	H28	0.8	359.9
C29	C28	H28	C31	180.0	179.8
H28	C28	C29	H29	0.8	359.9
H28	C28	C31	C30	178.5	180.0
H28	C28	C31	N32	0.1	359.7
C30	C35	H35	C34	180.0	180.0
H35	C35	C34	H34	3.5	0.1
N32	C33	H33	C34	180.0	180.0
H33	C33	C34	C35	181.6	180.3
H33	C33	C34	H34	1.5	360.0
C33	C34	H34	C35	180.0	180.3
H34	C34	C33	H33	1.5	360.0
H34	C34	C35	H35	3.5	0.1