PDB Chemical Component YKC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YKC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.449	1.384
C1	C4	1.473	1.379
C2	C3	1.428	1.383
C3	C6	1.406	1.379
C4	C5	1.445	1.397
C5	C6	1.515	1.394
C5	C8	1.424	1.482
C6	C7	1.475	1.509
C7	C9	1.453	1.510
C7	N23	1.433	1.466
C8	C9	1.415	1.390
C8	C13	1.445	1.409
C9	C10	1.468	1.378
C10	C11	1.429	1.386
C11	C12	1.431	1.380
C12	C13	1.433	1.394
C13	C14	1.469	1.477
C14	N15	1.341	1.313
C14	N16	1.372	1.369
N15	C18	1.362	1.344
N16	C17	1.341	1.380
C17	C18	1.456	1.410
C17	C22	1.381	1.385
C18	C19	1.404	1.402
C19	C20	1.391	1.367
C20	N21	1.399	1.323
N21	C22	1.376	1.318
N23	C24	1.378	1.348
C24	C25	1.495	1.482
C24	O26	1.234	1.215
C25	C27	1.479	1.398
C25	C40	1.447	1.398
C27	C28	1.419	1.381
C28	N30	1.415	1.318
C40	C60	1.448	1.381
N30	C60	1.417	1.319
C1	H1	1.081	1.080
C2	H2	1.080	1.080
C4	H4	1.080	1.080
C3	H3	1.080	1.080
C7	H7	1.100	1.090
N23	H23	1.000	0.970
C10	H10	1.080	1.080
C11	H11	1.080	1.079
C12	H12	1.080	1.079
N16	H16	1.000	0.970
C22	H22	1.080	1.080
C19	H19	1.080	1.080
C20	H20	1.080	1.080
C27	H27	1.080	1.079
C40	H40	1.080	1.080
C28	H28	1.080	1.081
C60	H60	1.080	1.081

Bond Angles for YKC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C4	124.2	120.3
C1	C2	C3	117.6	120.1
C2	C1	H1	117.9	119.9
C1	C2	H2	121.2	119.9
C1	C4	C5	117.6	119.9
C4	C1	H1	117.9	119.9
C1	C4	H4	121.2	120.0
C2	C3	C6	120.6	120.1
C3	C2	H2	121.2	120.0
C2	C3	H3	119.7	120.0
C3	C6	C5	122.9	120.3
C3	C6	C7	130.9	132.2
C6	C3	H3	119.7	119.9
C4	C5	C6	117.1	119.3
C4	C5	C8	135.5	131.2
C5	C4	H4	121.2	120.0
C6	C5	C8	107.4	109.4
C5	C6	C7	106.2	107.5
C5	C8	C9	109.4	109.6
C5	C8	C13	131.6	131.1
C6	C7	C9	106.7	106.0
C6	C7	N23	121.7	110.2
C6	C7	H7	102.8	110.2
C9	C7	N23	109.4	110.1
C7	C9	C8	110.3	107.5
C7	C9	C10	128.8	132.1
C9	C7	H7	116.8	110.2
C7	N23	C24	120.5	119.9
N23	C7	H7	99.7	110.2
C7	N23	H23	119.8	120.1
C9	C8	C13	118.9	119.3
C8	C9	C10	120.9	120.4
C8	C13	C12	120.3	119.6
C8	C13	C14	125.1	120.2
C9	C10	C11	119.5	120.4
C9	C10	H10	120.3	119.9
C10	C11	C12	119.3	120.2
C11	C10	H10	120.2	119.8
C10	C11	H11	120.4	119.9
C11	C12	C13	121.0	120.1
C12	C11	H11	120.3	119.9
C11	C12	H12	119.5	119.9
C12	C13	C14	114.5	120.2
C13	C12	H12	119.5	120.0
C13	C14	N15	126.5	125.1
C13	C14	N16	120.7	125.1
N15	C14	N16	112.8	109.8
C14	N15	C18	106.8	109.7
C14	N16	C17	105.7	107.1
C14	N16	H16	127.2	126.4
N15	C18	C17	106.3	107.4
N15	C18	C19	132.0	134.5
N16	C17	C18	108.3	106.1
N16	C17	C22	132.3	134.9
C17	N16	H16	127.1	126.5
C18	C17	C22	119.4	119.1
C17	C18	C19	121.7	118.1
C17	C22	N21	119.4	120.2
C17	C22	H22	120.3	119.9
C18	C19	C20	115.1	118.8
C18	C19	H19	122.4	120.6
C19	C20	N21	123.9	121.5
C20	C19	H19	122.5	120.5
C19	C20	H20	118.0	119.2
C20	N21	C22	120.4	122.4
N21	C20	H20	118.1	119.3
N21	C22	H22	120.3	119.9
N23	C24	C25	117.1	120.0
N23	C24	O26	120.5	120.0
C24	N23	H23	119.7	120.0
C25	C24	O26	122.4	120.0
C24	C25	C27	115.1	120.9
C24	C25	C40	122.0	120.9
C27	C25	C40	122.8	118.2
C25	C27	C28	116.7	119.0
C25	C27	H27	121.7	120.5
C25	C40	C60	118.0	119.0
C25	C40	H40	121.0	120.5
C27	C28	N30	120.0	120.9
C28	C27	H27	121.6	120.5
C27	C28	H28	120.0	119.5
C28	N30	C60	124.5	122.0
N30	C28	H28	120.0	119.6
C40	C60	N30	118.0	120.9
C60	C40	H40	121.0	120.5
C40	C60	H60	121.0	119.6
N30	C60	H60	121.0	119.5

Torsion Angles for YKC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C4	C5	358.7	0.0
C4	C1	C2	H1	180.0	180.3
C2	C1	C4	H4	178.7	180.0
C1	C2	C3	C6	1.3	360.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	H3	181.3	180.0
C4	C1	C2	C3	0.3	0.0
C2	C1	C4	H1	180.0	179.7
C4	C1	C2	H2	180.3	180.0
C1	C4	C5	C6	0.8	359.9
C1	C4	C5	C8	177.9	180.1
C5	C4	C1	H4	180.0	180.0
C3	C2	C1	C4	0.3	0.0
C3	C2	C1	H1	180.3	179.7
C1	C2	C3	H2	180.0	180.0
C2	C3	C6	C5	358.2	360.0
C2	C3	C6	C7	179.1	180.0
C6	C3	C2	H3	180.0	180.0
C6	C3	C2	H2	181.3	180.0
C2	C3	C6	H3	180.0	180.0
C4	C5	C6	C3	0.7	0.1
C3	C6	C5	C8	182.8	180.0
C5	C6	C3	C7	179.0	179.9
C3	C6	C7	C9	177.8	180.0
C3	C6	C7	N23	51.4	60.9
C3	C6	C7	H7	301.3	299.1
C5	C4	C1	H1	178.7	180.3
C1	C4	C5	H4	180.0	180.0
C3	C6	C5	C4	0.7	0.1
C6	C5	C4	C8	182.8	179.9
C4	C5	C6	C7	180.0	180.0
C4	C5	C8	C9	180.7	180.0
C4	C5	C8	C13	359.5	359.9
C3	C6	C5	C7	180.8	180.0
C5	C6	C3	H3	178.2	180.0
C4	C5	C6	C8	177.9	180.1
C6	C5	C4	H4	180.8	180.0
C6	C5	C8	C9	358.0	0.1
C6	C5	C8	C13	176.8	180.0
C5	C6	C7	C9	358.6	0.0
C5	C6	C7	N23	232.2	240.9
C5	C6	C7	H7	122.1	119.2
C4	C5	C8	C6	182.7	179.9
C8	C5	C4	H4	357.9	0.1
C8	C5	C6	C7	2.1	359.9
C7	C9	C8	C5	1.2	359.9
C9	C8	C5	C13	181.2	180.1
C5	C8	C9	C10	179.2	179.9
C5	C8	C13	C12	181.9	180.1
C5	C8	C13	C14	3.1	0.0
C3	C6	C7	C5	179.2	179.9
C7	C6	C3	H3	359.2	0.1
C7	C6	C5	C8	2.1	359.9
C9	C7	C6	N23	126.4	119.1
C6	C7	C9	C8	0.2	0.1
C6	C7	C9	C10	182.4	180.0
C9	C7	C6	H7	236.5	240.8
C6	C7	N23	C24	258.9	273.6
N23	C7	C6	H7	110.1	121.7
C6	C7	N23	H23	78.9	93.5
C5	C8	C9	C7	1.2	359.9
C6	C7	C9	N23	226.5	240.9
C6	C7	C9	H7	114.3	119.2
C9	C7	N23	C24	133.7	157.0
N23	C7	C9	H7	247.8	238.3
C9	C7	N23	H23	313.7	336.9
C7	C9	C8	C13	182.2	180.0
C8	C9	C7	C10	177.8	180.1
C7	C9	C10	C11	176.9	180.0
C7	C9	C10	H10	356.9	0.1
C6	C7	N23	C9	125.2	116.6
C6	C7	N23	H7	248.3	238.3
N23	C7	C9	C8	133.7	119.2
N23	C7	C9	C10	315.9	299.1
C9	C7	N23	H7	123.1	121.7
C7	N23	C24	C25	183.4	180.0
C7	N23	C24	O26	2.0	359.9
C24	N23	C7	H23	180.0	180.0
C5	C8	C9	C13	179.0	179.9
C8	C9	C7	N23	133.7	119.2
C7	C9	C8	C10	182.0	179.9
C8	C9	C7	H7	245.9	240.9
C9	C8	C13	C12	0.7	0.0
C9	C8	C13	C14	181.8	179.9
C8	C9	C10	C11	359.3	359.9
C8	C9	C10	H10	179.3	180.0
C5	C8	C13	C9	181.3	180.1
C13	C8	C9	C10	0.2	0.0
C11	C12	C13	C8	359.1	360.0
C12	C13	C8	C14	178.8	180.1
C8	C13	C12	H12	179.1	180.0
C8	C13	C14	N15	46.1	329.3
C8	C13	C14	N16	227.6	149.0
C10	C9	C7	N23	315.9	299.1
C7	C9	C10	C8	177.6	180.1
C10	C9	C7	H7	68.1	60.8
C10	C9	C8	C13	0.2	0.0
C9	C10	C11	C12	0.5	0.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	H11	180.5	179.9
C9	C10	C11	H10	180.0	180.0
C10	C11	C12	C13	0.4	360.0
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	H12	180.4	180.0
C8	C13	C12	C11	359.1	360.0
C12	C11	C10	H10	180.4	180.0
C10	C11	C12	H11	180.0	179.9
C11	C12	C13	C14	178.0	180.1
C13	C12	C11	H12	180.0	180.0
C8	C13	C12	C14	181.1	179.9
C13	C12	C11	H11	180.4	180.1
C11	C12	C13	H12	180.0	180.0
C12	C13	C14	N15	227.2	149.2
C12	C13	C14	N16	48.7	328.9
C8	C13	C14	C12	178.9	180.1
C14	C13	C12	H12	358.0	0.1
N15	C14	C13	N16	178.5	180.3
C13	C14	N15	C18	177.9	180.0
C13	C14	N16	C17	181.9	180.0
C13	C14	N16	H16	1.9	0.0
C13	C14	N15	N16	181.4	179.7
N15	C14	N16	C17	3.1	359.7
N15	C14	N16	H16	183.1	179.7
C14	N15	C18	C17	2.3	359.8
C14	N15	C18	C19	181.9	180.0
C13	C14	N16	N15	178.7	180.3
N16	C14	N15	C18	356.5	0.3
C14	N16	C17	C18	358.5	0.2
C14	N16	C17	C22	178.4	180.0
C17	N16	C14	H16	180.0	180.0
C18	N15	C14	N16	356.5	0.3
N16	C17	C18	N15	359.5	360.0
N15	C18	C17	C22	179.6	180.2
C17	C18	N15	C19	180.5	179.8
N15	C18	C19	C20	178.2	180.0
N15	C18	C19	H19	358.2	359.9
C14	N16	C17	H16	180.0	180.0
N15	C18	C17	N16	359.5	360.0
C18	C17	N16	C22	180.1	180.2
N16	C17	C18	C19	179.9	179.8
N16	C17	C22	N21	181.0	179.8
N16	C17	C22	H22	1.0	0.1
N15	C18	C17	C19	179.6	180.1
N16	C17	C18	C22	179.9	179.8
C18	C17	N16	H16	178.5	180.2
C18	C17	C22	N21	0.9	359.6
C18	C17	C22	H22	180.9	179.9
C17	C18	C19	C20	357.7	0.2
C17	C18	C19	H19	177.7	180.1
N16	C17	C22	C18	180.1	180.2
C22	C17	N16	H16	358.4	359.9
C22	C17	C18	C19	360.0	0.0
C20	N21	C22	C17	0.7	0.6
N21	C22	C17	H22	180.0	179.7
N15	C18	C19	C17	180.5	179.8
C19	C18	C17	C22	360.0	0.0
C18	C19	C20	N21	4.1	0.0
C20	C19	C18	H19	180.0	180.1
C18	C19	C20	H20	184.1	179.9
C18	C19	C20	H19	180.0	179.9
C19	C20	N21	C22	356.6	359.5
N21	C20	C19	H20	180.0	180.1
C17	C22	N21	C20	0.7	0.6
N21	C20	C19	H19	184.1	180.1
C19	C20	N21	H20	180.0	179.9
C20	N21	C22	H22	180.7	180.4
C17	C22	N21	H22	180.0	180.3
C22	N21	C20	H20	176.6	179.7
C24	N23	C7	H7	10.6	35.3
C7	N23	C24	H23	180.0	180.0
C25	C24	N23	O26	181.4	180.1
N23	C24	C25	C27	147.5	180.0
N23	C24	C25	C40	332.2	359.6
N23	C24	C25	O26	178.5	179.9
C25	C24	N23	H23	3.4	0.1
C27	C25	C24	C40	175.4	180.4
C24	C25	C27	C28	183.2	180.0
C24	C25	C27	H27	3.2	359.9
C24	C25	C40	C60	177.3	180.1
C24	C25	C40	H40	357.2	0.0
N23	C24	O26	C25	181.5	180.1
O26	C24	N23	H23	182.0	180.0
O26	C24	C25	C27	329.0	0.1
O26	C24	C25	C40	153.6	179.7
C27	C25	C24	O26	329.0	0.1
C24	C25	C27	C40	184.7	179.7
C27	C25	C40	C60	2.2	359.7
C27	C25	C40	H40	182.2	179.7
C25	C27	C28	N30	359.9	360.0
C28	C27	C25	H27	180.0	180.1
C25	C27	C28	H28	179.9	180.0
C40	C25	C24	O26	153.6	179.7
C24	C25	C40	C27	175.0	180.3
C40	C25	C27	C28	358.5	0.3
C40	C25	C27	H27	178.5	180.2
C25	C40	C60	N30	358.6	0.0
C60	C40	C25	H40	180.0	180.0
C25	C40	C60	H60	178.6	180.0
C28	C27	C25	C40	358.5	0.3
C25	C27	C28	H27	180.0	179.9
C27	C28	N30	C60	0.9	359.7
N30	C28	C27	H28	180.0	180.0
N30	C28	C27	H27	179.9	180.0
C27	C28	N30	H28	180.0	180.0
C40	C60	N30	C28	359.9	0.3
C28	N30	C60	H60	179.9	180.3
C25	C40	C60	H40	180.0	180.0
C28	N30	C60	C40	359.9	0.3
N30	C60	C40	H60	180.0	180.0
C60	N30	C28	H28	180.9	179.7
N30	C60	C40	H40	178.6	180.0
C40	C60	N30	H60	180.0	180.0
C2	C1	H1	C4	180.0	180.3
H1	C1	C2	C3	180.3	179.7
H1	C1	C2	H2	0.2	359.7
H1	C1	C4	C5	178.7	180.3
H1	C1	C4	H4	358.7	0.3
H2	C2	C1	C4	180.3	180.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C1	H1	0.2	359.7
H2	C2	C3	C6	181.3	180.0
H2	C2	C3	H3	1.3	360.0
C1	C4	H4	C5	180.0	180.0
H4	C4	C1	H1	358.7	0.3
H4	C4	C5	C6	180.8	180.0
H4	C4	C5	C8	357.9	0.1
C2	C3	H3	C6	180.0	180.0
H3	C3	C2	H2	1.3	360.0
H3	C3	C6	C5	178.2	180.0
H3	C3	C6	C7	359.2	0.1
C6	C7	H7	C9	243.5	243.4
C6	C7	H7	N23	125.9	121.7
C9	C7	H7	N23	242.3	238.3
H7	C7	C9	C8	245.9	240.9
H7	C7	C9	C10	68.1	60.8
H7	C7	N23	C24	10.6	35.3
H7	C7	N23	H23	190.6	215.2
C7	N23	H23	C24	180.0	180.0
H23	N23	C7	H7	190.6	215.2
H23	N23	C24	C25	3.4	0.1
H23	N23	C24	O26	182.0	180.0
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	180.4	180.0
H10	C10	C11	H11	0.5	359.9
C10	C11	H11	C12	180.0	180.1
H11	C11	C10	H10	0.5	359.9
H11	C11	C12	C13	180.4	180.1
H11	C11	C12	H12	0.3	0.1
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	0.3	0.1
H12	C12	C13	C14	358.0	0.1
C14	N16	H16	C17	180.0	180.0
H16	N16	C17	C18	178.5	180.2
H16	N16	C17	C22	358.4	359.9
C17	C22	H22	N21	180.0	179.7
C18	C19	H19	C20	180.0	180.1
H19	C19	C20	N21	184.1	180.1
H19	C19	C20	H20	4.1	360.0
C19	C20	H20	N21	180.0	180.1
H20	C20	C19	H19	4.1	360.0
H20	C20	N21	C22	176.6	179.7
H27	C27	C25	C40	178.5	180.2
C25	C27	H27	C28	180.0	180.1
H27	C27	C28	N30	179.9	180.0
H27	C27	C28	H28	359.9	0.0
C25	C40	H40	C60	180.0	180.0
H40	C40	C60	N30	178.6	180.0
H40	C40	C60	H60	358.6	360.0
C27	C28	H28	N30	180.0	180.0
H28	C28	C27	H27	359.9	0.0
H28	C28	N30	C60	180.9	179.7
C40	C60	H60	N30	180.0	180.0
H60	C60	C40	H40	358.6	360.0