PDB Chemical Component YK7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YK7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C31 |
O30 |
1.436 |
1.429 |
| C28 |
C27 |
1.536 |
1.529 |
| C28 |
C21 |
1.511 |
1.507 |
| C20 |
C21 |
1.397 |
1.387 |
| C20 |
C19 |
1.412 |
1.383 |
| C27 |
N25 |
1.490 |
1.471 |
| C21 |
C22 |
1.382 |
1.379 |
| O30 |
C19 |
1.376 |
1.360 |
| C19 |
C18 |
1.420 |
1.393 |
| N25 |
C29 |
1.474 |
1.469 |
| N25 |
C24 |
1.473 |
1.467 |
| C22 |
C24 |
1.513 |
1.507 |
| C22 |
C23 |
1.399 |
1.386 |
| C18 |
C23 |
1.419 |
1.386 |
| C18 |
N17 |
1.423 |
1.400 |
| N17 |
C2 |
1.394 |
1.381 |
| C2 |
N1 |
1.338 |
1.327 |
| C2 |
N3 |
1.329 |
1.325 |
| N1 |
C6 |
1.334 |
1.320 |
| N3 |
C4 |
1.341 |
1.328 |
| C13 |
C12 |
1.386 |
1.381 |
| C13 |
C14 |
1.381 |
1.383 |
| C12 |
C11 |
1.409 |
1.388 |
| C6 |
C5 |
1.417 |
1.399 |
| C14 |
C15 |
1.377 |
1.383 |
| C4 |
C5 |
1.436 |
1.413 |
| C4 |
N10 |
1.401 |
1.380 |
| C11 |
N10 |
1.416 |
1.398 |
| C11 |
C16 |
1.403 |
1.389 |
| C5 |
C7 |
1.486 |
1.472 |
| C15 |
C16 |
1.386 |
1.381 |
| C7 |
N9 |
1.355 |
1.347 |
| C7 |
O8 |
1.222 |
1.216 |
| C6 |
H1 |
1.080 |
1.080 |
| N10 |
H2 |
1.000 |
0.970 |
| C12 |
H3 |
1.080 |
1.080 |
| C15 |
H4 |
1.080 |
1.079 |
| C16 |
H5 |
1.080 |
1.080 |
| C23 |
H6 |
1.080 |
1.081 |
| C24 |
H7 |
1.100 |
1.090 |
| C24 |
H8 |
1.100 |
1.090 |
| C27 |
H9 |
1.100 |
1.090 |
| C27 |
H10 |
1.100 |
1.090 |
| C31 |
H11 |
1.100 |
1.090 |
| C31 |
H12 |
1.100 |
1.089 |
| C31 |
H13 |
1.100 |
1.090 |
| N9 |
H14 |
1.000 |
0.970 |
| N9 |
H15 |
1.000 |
0.970 |
| C13 |
H16 |
1.080 |
1.080 |
| C14 |
H17 |
1.080 |
1.080 |
| N17 |
H18 |
1.000 |
0.970 |
| C20 |
H19 |
1.080 |
1.081 |
| C28 |
H21 |
1.100 |
1.091 |
| C28 |
H22 |
1.099 |
1.090 |
| C29 |
H23 |
1.100 |
1.090 |
| C29 |
H24 |
1.100 |
1.090 |
| C29 |
H25 |
1.101 |
1.090 |
Bond Angles for YK7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O30 |
C31 |
H11 |
109.5 |
109.5 |
| O30 |
C31 |
H12 |
109.4 |
109.5 |
| O30 |
C31 |
H13 |
109.5 |
109.5 |
| C28 |
C27 |
H9 |
108.3 |
109.6 |
| C28 |
C27 |
H10 |
108.3 |
109.7 |
| C20 |
C21 |
C22 |
120.1 |
119.9 |
| C27 |
N25 |
C29 |
107.5 |
111.0 |
| N25 |
C27 |
H9 |
108.3 |
109.6 |
| N25 |
C27 |
H10 |
108.2 |
109.6 |
| C21 |
C22 |
C24 |
120.9 |
121.8 |
| C21 |
C22 |
C23 |
119.7 |
119.9 |
| C19 |
C18 |
C23 |
118.0 |
119.6 |
| C19 |
C18 |
N17 |
116.2 |
120.1 |
| N25 |
C29 |
H23 |
109.5 |
109.4 |
| N25 |
C29 |
H24 |
109.5 |
109.5 |
| N25 |
C29 |
H25 |
109.5 |
109.5 |
| N25 |
C24 |
H7 |
108.5 |
109.3 |
| N25 |
C24 |
H8 |
108.5 |
109.2 |
| C22 |
C24 |
H7 |
108.5 |
109.3 |
| C22 |
C24 |
H8 |
108.5 |
109.3 |
| C22 |
C23 |
H6 |
119.2 |
119.9 |
| C23 |
C18 |
N17 |
125.8 |
120.2 |
| C18 |
C23 |
H6 |
119.1 |
119.7 |
| C18 |
N17 |
H18 |
115.5 |
120.0 |
| N1 |
C2 |
N3 |
118.5 |
122.0 |
| C2 |
N1 |
C6 |
121.0 |
121.2 |
| C2 |
N3 |
C4 |
126.0 |
120.8 |
| N1 |
C6 |
H1 |
119.1 |
120.5 |
| C13 |
C12 |
H3 |
119.8 |
120.0 |
| C14 |
C13 |
H16 |
119.3 |
120.0 |
| C13 |
C14 |
H17 |
120.7 |
119.9 |
| C12 |
C11 |
C16 |
117.6 |
119.8 |
| C6 |
C5 |
C7 |
120.9 |
120.9 |
| C14 |
C15 |
H4 |
119.3 |
120.0 |
| C5 |
C4 |
N10 |
121.3 |
120.6 |
| C4 |
C5 |
C7 |
122.9 |
120.9 |
| C4 |
N10 |
H2 |
115.7 |
120.0 |
| C11 |
N10 |
H2 |
115.7 |
120.0 |
| C11 |
C16 |
C15 |
120.6 |
119.9 |
| C11 |
C16 |
H5 |
119.7 |
120.1 |
| C5 |
C7 |
N9 |
123.8 |
120.0 |
| C5 |
C7 |
O8 |
118.5 |
120.0 |
| C16 |
C15 |
H4 |
119.3 |
120.0 |
| C15 |
C16 |
H5 |
119.7 |
120.0 |
| O8 |
C7 |
N9 |
117.7 |
120.0 |
| C7 |
N9 |
H14 |
120.0 |
120.0 |
| C7 |
N9 |
H15 |
120.0 |
120.0 |
| H7 |
C24 |
H8 |
109.5 |
109.3 |
| H9 |
C27 |
H10 |
109.5 |
109.7 |
| H11 |
C31 |
H12 |
109.5 |
109.5 |
| H11 |
C31 |
H13 |
109.4 |
109.4 |
| H12 |
C31 |
H13 |
109.5 |
109.5 |
| H14 |
N9 |
H15 |
120.0 |
120.0 |
| H21 |
C28 |
H22 |
109.5 |
109.3 |
| H23 |
C29 |
H24 |
109.5 |
109.5 |
| H23 |
C29 |
H25 |
109.5 |
109.5 |
| H24 |
C29 |
H25 |
109.4 |
109.5 |
Torsion Angles for YK7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H11 |
C31 |
O30 |
H12 |
240.0 |
240.0 |
| H11 |
C31 |
O30 |
H13 |
120.0 |
119.9 |
| H12 |
C31 |
O30 |
H13 |
240.0 |
240.0 |
| C28 |
C27 |
N25 |
C29 |
175.7 |
194.7 |
| N25 |
C27 |
C28 |
H9 |
239.3 |
119.7 |
| N25 |
C27 |
C28 |
H10 |
120.7 |
240.2 |
| H9 |
C27 |
C28 |
H10 |
241.4 |
120.6 |
| C20 |
C21 |
C22 |
C24 |
179.5 |
179.7 |
| C20 |
C21 |
C22 |
C23 |
1.1 |
359.3 |
| C28 |
C27 |
N25 |
H9 |
120.7 |
240.3 |
| C28 |
C27 |
N25 |
H10 |
239.3 |
119.8 |
| C27 |
N25 |
C29 |
H23 |
180.0 |
60.0 |
| C27 |
N25 |
C29 |
H24 |
300.0 |
180.0 |
| C27 |
N25 |
C29 |
H25 |
60.0 |
300.0 |
| C27 |
N25 |
C24 |
H7 |
72.1 |
187.1 |
| C27 |
N25 |
C24 |
H8 |
190.9 |
67.6 |
| H9 |
C27 |
N25 |
H10 |
118.6 |
239.5 |
| C21 |
C22 |
C24 |
H7 |
263.0 |
138.0 |
| C21 |
C22 |
C24 |
H8 |
144.2 |
257.5 |
| C21 |
C22 |
C23 |
H6 |
180.1 |
180.7 |
| C23 |
C18 |
C19 |
N17 |
182.4 |
180.3 |
| C19 |
C18 |
C23 |
H6 |
178.8 |
179.8 |
| C19 |
C18 |
N17 |
H18 |
344.2 |
335.2 |
| C29 |
N25 |
C27 |
H9 |
55.0 |
314.4 |
| C29 |
N25 |
C27 |
H10 |
296.4 |
74.9 |
| C29 |
N25 |
C24 |
H7 |
311.0 |
63.7 |
| C29 |
N25 |
C24 |
H8 |
69.8 |
304.2 |
| H23 |
C29 |
N25 |
H24 |
240.0 |
240.0 |
| H23 |
C29 |
N25 |
H25 |
120.0 |
120.0 |
| H24 |
C29 |
N25 |
H25 |
240.0 |
240.0 |
| C22 |
C24 |
N25 |
H7 |
239.4 |
120.3 |
| C22 |
C24 |
N25 |
H8 |
120.6 |
239.8 |
| H7 |
C24 |
N25 |
H8 |
241.2 |
119.5 |
| C21 |
C22 |
C24 |
C23 |
181.6 |
179.6 |
| N25 |
C24 |
C22 |
H7 |
120.6 |
239.7 |
| N25 |
C24 |
C22 |
H8 |
239.4 |
120.2 |
| C24 |
C22 |
C23 |
H6 |
1.7 |
0.3 |
| H7 |
C24 |
C22 |
H8 |
118.8 |
240.5 |
| C21 |
C22 |
C23 |
C24 |
178.4 |
180.4 |
| C18 |
C23 |
C22 |
H6 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
C18 |
0.1 |
0.7 |
| C19 |
C18 |
C23 |
N17 |
177.3 |
179.7 |
| C22 |
C23 |
C18 |
H6 |
180.0 |
180.0 |
| C23 |
C18 |
N17 |
H18 |
161.6 |
155.0 |
| C19 |
C18 |
N17 |
C23 |
182.6 |
180.3 |
| N17 |
C18 |
C23 |
H6 |
1.4 |
0.0 |
| N1 |
C2 |
N3 |
C4 |
358.4 |
360.0 |
| C2 |
N1 |
C6 |
H1 |
179.7 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
0.6 |
0.0 |
| C6 |
N1 |
C2 |
N3 |
0.6 |
0.0 |
| N3 |
C4 |
N10 |
H2 |
181.4 |
188.6 |
| C14 |
C13 |
C12 |
H3 |
181.2 |
180.0 |
| C13 |
C14 |
C15 |
H4 |
179.7 |
180.3 |
| C12 |
C11 |
N10 |
H2 |
154.0 |
152.9 |
| C12 |
C11 |
C16 |
C15 |
1.5 |
359.8 |
| C12 |
C11 |
C16 |
H5 |
181.4 |
179.7 |
| C2 |
N1 |
C6 |
C5 |
359.7 |
360.0 |
| C6 |
C5 |
C4 |
N10 |
180.3 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
181.5 |
180.0 |
| C6 |
C5 |
C7 |
N9 |
29.6 |
8.4 |
| C6 |
C5 |
C7 |
O8 |
208.1 |
188.4 |
| C16 |
C15 |
C14 |
H4 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
H5 |
179.6 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
1.9 |
0.0 |
| C6 |
C5 |
C4 |
C7 |
178.4 |
180.0 |
| C5 |
C4 |
N10 |
H2 |
359.6 |
8.6 |
| C4 |
C5 |
C7 |
N9 |
208.0 |
188.4 |
| C4 |
C5 |
C7 |
O8 |
26.5 |
8.4 |
| C2 |
N3 |
C4 |
N10 |
180.2 |
180.0 |
| N10 |
C4 |
C5 |
C7 |
1.8 |
0.0 |
| C11 |
N10 |
C4 |
H2 |
180.0 |
180.0 |
| C4 |
N10 |
C11 |
H2 |
180.0 |
180.0 |
| C16 |
C11 |
N10 |
H2 |
337.1 |
332.6 |
| C11 |
C16 |
C15 |
H4 |
179.6 |
180.0 |
| C15 |
C16 |
C11 |
H5 |
180.0 |
180.1 |
| C7 |
C5 |
C4 |
N10 |
1.8 |
0.0 |
| O8 |
C7 |
C5 |
N9 |
178.5 |
180.0 |
| C5 |
C7 |
N9 |
H14 |
178.5 |
360.0 |
| C5 |
C7 |
N9 |
H15 |
358.5 |
180.0 |
| C14 |
C15 |
C16 |
H4 |
180.0 |
180.0 |
| C11 |
C16 |
C15 |
H5 |
180.0 |
179.9 |
| C5 |
C7 |
N9 |
O8 |
178.5 |
180.0 |
| H14 |
N9 |
C7 |
H15 |
180.0 |
180.0 |
| C5 |
C7 |
O8 |
N9 |
181.4 |
180.0 |
| O8 |
C7 |
N9 |
H14 |
0.0 |
180.0 |
| O8 |
C7 |
N9 |
H15 |
180.0 |
360.0 |
| H1 |
C6 |
C5 |
C7 |
359.2 |
359.9 |
| H3 |
C12 |
C11 |
C16 |
178.1 |
180.2 |
| H4 |
C15 |
C16 |
H5 |
359.6 |
0.1 |
| C11 |
C16 |
H5 |
C15 |
180.0 |
180.1 |
| H5 |
C16 |
C15 |
H4 |
359.6 |
0.1 |
| H6 |
C23 |
C18 |
N17 |
1.4 |
0.0 |
| N25 |
C24 |
H7 |
H8 |
118.2 |
240.6 |
| C22 |
C24 |
H7 |
H8 |
241.8 |
119.5 |
| N25 |
C24 |
H8 |
H7 |
241.8 |
119.5 |
| C22 |
C24 |
H8 |
H7 |
118.2 |
240.5 |
| C28 |
C27 |
H9 |
H10 |
117.8 |
239.4 |
| H9 |
C27 |
N25 |
C29 |
55.0 |
314.4 |
| N25 |
C27 |
H9 |
H10 |
242.2 |
120.4 |
| C28 |
C27 |
H10 |
H9 |
242.2 |
120.5 |
| H10 |
C27 |
N25 |
C29 |
296.4 |
74.9 |
| N25 |
C27 |
H10 |
H9 |
117.8 |
239.6 |
| O30 |
C31 |
H11 |
H12 |
120.0 |
120.0 |
| O30 |
C31 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C31 |
H11 |
H13 |
120.0 |
120.0 |
| O30 |
C31 |
H12 |
H11 |
240.0 |
240.0 |
| O30 |
C31 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C31 |
H12 |
H13 |
240.0 |
240.1 |
| O30 |
C31 |
H13 |
H11 |
120.0 |
120.0 |
| O30 |
C31 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C31 |
H13 |
H12 |
120.0 |
120.0 |
| C7 |
N9 |
H14 |
H15 |
180.0 |
180.0 |
| C7 |
N9 |
H15 |
H14 |
180.0 |
180.0 |
| H16 |
C13 |
C12 |
H3 |
1.3 |
360.0 |
| H16 |
C13 |
C14 |
H17 |
359.9 |
0.0 |
| H17 |
C14 |
C13 |
H16 |
359.9 |
0.0 |
| H17 |
C14 |
C15 |
H4 |
359.7 |
0.0 |
| H19 |
C20 |
C21 |
C22 |
178.8 |
180.2 |
| H21 |
C28 |
C27 |
H9 |
211.5 |
69.8 |
| H21 |
C28 |
C27 |
H10 |
330.1 |
309.2 |
| H22 |
C28 |
C27 |
H9 |
330.1 |
310.1 |
| H22 |
C28 |
C27 |
H10 |
88.7 |
189.5 |
| N25 |
C29 |
H23 |
H24 |
120.0 |
120.0 |
| N25 |
C29 |
H23 |
H25 |
240.0 |
240.0 |
| H24 |
C29 |
H23 |
H25 |
119.9 |
120.0 |
| N25 |
C29 |
H24 |
H23 |
239.9 |
240.0 |
| N25 |
C29 |
H24 |
H25 |
120.0 |
120.0 |
| H23 |
C29 |
H24 |
H25 |
240.0 |
240.0 |
| N25 |
C29 |
H25 |
H23 |
120.1 |
119.9 |
| N25 |
C29 |
H25 |
H24 |
240.0 |
240.0 |
| H23 |
C29 |
H25 |
H24 |
120.0 |
120.1 |