PDB Chemical Component YJX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YJX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C19	1.438	1.386
C15	C8	1.432	1.381
C19	C14	1.412	1.381
C8	C3	1.451	1.391
C14	C7	1.475	1.391
C20	C22	1.419	1.366
C20	C17	1.489	1.402
C22	N23	1.439	1.323
C21	C18	1.371	1.385
C21	N23	1.430	1.319
C3	C7	1.483	1.413
C3	C1	1.443	1.466
C7	C9	1.453	1.473
C17	C18	1.432	1.411
C17	N11	1.361	1.342
C18	N12	1.357	1.380
C5	C2	1.427	1.463
C5	N11	1.337	1.317
C5	N12	1.399	1.373
C1	C2	1.357	1.359
C1	N4	1.444	1.395
C9	N4	1.364	1.341
C9	O16	1.276	1.216
C2	C6	1.575	1.512
C6	C13	1.538	1.530
C13	C10	1.517	1.533
C10	N4	1.517	1.470
C15	H15	1.080	1.080
C19	H19	1.080	1.080
C8	H8	1.079	1.080
C14	H14	1.080	1.079
C20	H20	1.080	1.081
C22	H22	1.080	1.080
C21	H21	1.080	1.080
N12	H12	1.001	0.970
C6	H61C	1.100	1.090
C6	H62C	1.100	1.090
C13	H131	1.100	1.089
C13	H132	1.100	1.091
C10	H101	1.100	1.090
C10	H102	1.100	1.091

Bond Angles for YJX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C19	C15	C8	127.6	120.5
C15	C19	C14	115.1	120.6
C19	C15	H15	116.2	119.8
C15	C19	H19	122.5	119.7
C15	C8	C3	117.1	119.8
C8	C15	H15	116.2	119.7
C15	C8	H8	121.5	120.1
C19	C14	C7	121.7	119.8
C14	C19	H19	122.5	119.7
C19	C14	H14	119.2	120.1
C8	C3	C7	117.9	119.7
C8	C3	C1	136.0	134.3
C3	C8	H8	121.5	120.1
C14	C7	C3	120.7	119.6
C14	C7	C9	129.4	133.6
C7	C14	H14	119.2	120.1
C22	C20	C17	115.5	118.8
C20	C22	N23	123.5	121.5
C22	C20	H20	122.2	120.6
C20	C22	H22	118.3	119.2
C20	C17	C18	119.7	118.1
C20	C17	N11	127.9	134.5
C17	C20	H20	122.3	120.6
C22	N23	C21	118.6	122.4
N23	C22	H22	118.2	119.3
C18	C21	N23	120.3	120.2
C21	C18	C17	122.4	119.0
C21	C18	N12	131.1	134.8
C18	C21	H21	119.9	119.9
N23	C21	H21	119.9	119.9
C7	C3	C1	105.9	106.0
C3	C7	C9	109.9	106.7
C3	C1	C2	134.4	128.8
C3	C1	N4	104.7	108.2
C7	C9	N4	103.9	109.0
C7	C9	O16	130.8	125.5
C18	C17	N11	112.4	107.5
C17	C18	N12	106.5	106.2
C17	N11	C5	100.9	109.8
C18	N12	C5	103.1	107.0
C18	N12	H12	128.5	126.5
C2	C5	N11	123.3	125.2
C2	C5	N12	119.5	125.2
C5	C2	C1	124.8	121.0
C5	C2	C6	117.0	121.0
N11	C5	N12	117.2	109.6
C5	N12	H12	128.4	126.5
C2	C1	N4	120.8	123.0
C1	C2	C6	118.2	118.1
C1	N4	C9	115.5	110.0
C1	N4	C10	124.5	122.4
N4	C9	O16	125.3	125.5
C9	N4	C10	120.0	127.6
C2	C6	C13	114.5	109.9
C2	C6	H61C	107.8	109.4
C2	C6	H62C	107.8	109.3
C6	C13	C10	112.2	110.1
C13	C6	H61C	107.8	109.4
C13	C6	H62C	107.8	109.4
C6	C13	H131	108.6	109.4
C6	C13	H132	108.6	109.3
C13	C10	N4	112.2	108.0
C10	C13	H131	108.6	109.4
C10	C13	H132	108.6	109.4
C13	C10	H101	108.6	109.8
C13	C10	H102	108.6	109.7
N4	C10	H101	108.6	109.8
N4	C10	H102	108.6	109.8
H61C	C6	H62C	111.1	109.3
H131	C13	H132	110.3	109.3
H101	C10	H102	110.3	109.8

Torsion Angles for YJX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C19	C15	C8	C3	357.9	359.9
C8	C15	C19	H15	180.0	180.3
C19	C15	C8	H8	177.9	180.0
C15	C19	C14	C7	358.6	0.0
C14	C19	C15	H19	180.0	180.0
C15	C19	C14	H14	178.7	180.0
C8	C15	C19	C14	1.9	360.0
C19	C15	C8	H15	180.0	179.7
C8	C15	C19	H19	181.9	180.0
C15	C8	C3	C7	1.6	0.1
C15	C8	C3	C1	174.7	180.2
C3	C8	C15	H8	180.0	179.9
C14	C19	C15	C8	1.9	360.0
C14	C19	C15	H15	181.9	179.6
C15	C19	C14	H19	180.0	180.0
C19	C14	C7	C3	1.1	0.0
C19	C14	C7	C9	182.6	180.1
C7	C14	C19	H14	180.0	180.0
C3	C8	C15	H15	177.9	180.3
C15	C8	C3	H8	180.0	180.1
C14	C7	C3	C8	358.8	359.9
C7	C3	C8	C1	186.9	179.9
C8	C3	C7	C9	177.6	179.9
C8	C3	C1	C2	1.2	0.4
C8	C3	C1	N4	184.0	180.6
C7	C14	C19	H19	178.7	180.0
C19	C14	C7	H14	180.0	180.0
C8	C3	C7	C14	358.8	359.9
C14	C7	C3	C1	183.8	179.8
C3	C7	C14	C9	178.5	180.0
C14	C7	C9	N4	177.0	179.7
C14	C7	C9	O16	357.3	359.6
C22	C20	C17	C18	0.0	0.0
C22	C20	C17	N11	179.1	180.0
C17	C20	C22	H20	180.0	180.3
C20	C22	N23	C21	358.5	359.9
N23	C22	C20	H22	180.0	180.1
C17	C20	C22	N23	1.3	0.1
C22	C20	C17	H20	180.0	179.7
C17	C20	C22	H22	181.3	179.9
C21	C18	C17	C20	358.8	359.9
C18	C17	C20	N11	181.0	180.1
C20	C17	C18	N12	180.1	180.0
C20	C17	N11	C5	179.9	180.0
N23	C22	C20	C17	1.3	0.1
N23	C22	C20	H20	181.4	179.8
C20	C22	N23	H22	180.0	179.9
C18	C21	N23	C22	0.3	0.0
C22	N23	C21	H21	180.2	180.1
C20	C17	C18	C21	358.8	359.9
C22	N23	C21	C18	0.3	0.0
N23	C21	C18	H21	180.0	180.1
C21	C18	C17	N11	179.6	180.0
C17	C18	C21	N12	181.6	180.1
C21	C18	N12	C5	181.1	180.1
C21	C18	N12	H12	1.1	0.1
C21	N23	C22	H22	178.5	180.0
N23	C21	C18	C17	1.1	0.1
N23	C21	C18	N12	179.4	179.9
C18	C21	N23	H21	180.0	179.9
C8	C3	C7	C1	175.0	180.1
C7	C3	C8	H8	181.6	180.0
C14	C7	C3	C9	181.2	180.0
C3	C7	C14	H14	181.1	180.1
C7	C3	C1	C2	174.9	180.5
C7	C3	C1	N4	357.7	0.7
C3	C7	C9	N4	358.4	359.7
C3	C7	C9	O16	178.6	179.7
C8	C3	C1	C7	186.3	179.9
C1	C3	C8	H8	354.7	0.2
C1	C3	C7	C9	2.5	359.8
C5	C2	C1	C3	4.0	359.2
C2	C1	C3	N4	177.2	179.8
C3	C1	C2	C6	186.1	179.2
C3	C1	N4	C9	1.5	359.1
C3	C1	N4	C10	181.9	178.8
C14	C7	C9	C3	178.6	180.0
C9	C7	C14	H14	2.6	0.1
C9	C7	C3	C1	2.5	359.8
C1	N4	C9	C7	0.1	0.7
N4	C9	C7	O16	179.8	180.0
C7	C9	N4	C10	179.7	181.1
C20	C17	C18	N11	179.2	180.0
C18	C17	C20	H20	180.0	180.3
C17	C18	C21	N23	1.1	0.1
C21	C18	C17	N12	178.7	179.9
C17	C18	C21	H21	181.1	180.0
C18	C17	N11	C5	359.0	360.0
C17	C18	N12	C5	359.7	359.9
C17	C18	N12	H12	179.7	180.0
C20	C17	N11	C18	180.9	180.0
N11	C17	C20	H20	359.0	0.3
N11	C17	C18	N12	0.9	0.0
C2	C5	N11	C17	178.6	180.0
C17	N11	C5	N12	0.9	360.0
N12	C18	C21	N23	179.4	179.9
C21	C18	N12	C17	181.4	180.1
N12	C18	C21	H21	359.5	359.9
N12	C18	C17	N11	0.9	0.0
C2	C5	N12	C18	181.8	180.0
N11	C5	N12	C18	359.6	0.0
C5	N12	C18	H12	180.0	180.0
C3	C1	C2	C5	4.0	359.2
C17	N11	C5	C2	178.6	180.0
C18	N12	C5	C2	181.8	180.0
N11	C5	C2	N12	182.3	179.9
C2	C5	N12	H12	1.8	360.0
C5	C2	C1	N4	180.8	179.0
C1	C2	C5	C6	182.2	180.0
C5	C2	C6	C13	152.2	210.8
C5	C2	C6	H61C	272.2	331.0
C5	C2	C6	H62C	32.2	90.7
C18	N12	C5	N11	359.6	0.0
C2	C5	N11	N12	177.7	180.0
N11	C5	C2	C1	43.7	295.6
N11	C5	C2	C6	221.5	115.5
N11	C5	N12	H12	179.6	180.0
C18	N12	C5	H12	180.0	180.0
C2	C5	N12	N11	182.2	180.0
N12	C5	C2	C1	221.4	115.6
N12	C5	C2	C6	39.2	295.6
C3	C1	C2	N4	183.2	180.2
C1	C2	C5	N11	43.7	295.6
C1	C2	C5	N12	221.4	115.6
C5	C2	C1	C6	177.8	180.0
C2	C1	N4	C9	183.8	179.3
C2	C1	N4	C10	4.3	359.0
C1	C2	C6	C13	330.2	30.8
C1	C2	C6	H61C	90.2	151.0
C1	C2	C6	H62C	210.2	270.7
C3	C1	N4	C2	177.7	179.8
C7	C9	N4	C1	0.1	0.7
N4	C1	C2	C6	3.0	359.0
C1	N4	C9	O16	179.9	180.8
C9	N4	C1	C10	179.6	180.3
C13	C10	N4	C1	15.7	333.5
C1	N4	C10	H101	255.7	213.8
C1	N4	C10	H102	135.7	93.0
C7	C9	N4	O16	180.2	180.0
C1	N4	C9	C10	180.4	179.6
C13	C10	N4	C9	196.1	153.1
C9	N4	C10	H101	76.1	33.4
C9	N4	C10	H102	316.1	272.6
C7	C9	O16	N4	179.7	180.1
O16	C9	N4	C10	359.5	1.1
C6	C2	C5	N11	221.5	115.5
C6	C2	C5	N12	39.2	295.6
C5	C2	C6	C1	182.0	180.0
C6	C2	C1	N4	3.0	359.0
C2	C6	C13	C10	48.7	301.6
C13	C6	C2	H61C	240.0	239.8
C13	C6	C2	H62C	120.0	120.1
C2	C6	C13	H131	168.8	61.8
C2	C6	C13	H132	288.7	181.4
H61C	C6	C2	H62C	240.0	240.3
C2	C6	C13	H61C	120.0	120.1
C2	C6	C13	H62C	240.0	239.9
C6	C13	C10	N4	319.3	55.2
C10	C13	C6	H131	240.0	239.8
C10	C13	C6	H132	120.0	120.2
C6	C13	C10	H101	79.3	174.9
C6	C13	C10	H102	199.3	295.6
H61C	C6	C13	H62C	120.0	119.8
H131	C13	C6	H132	240.1	240.4
C1	N4	C10	C13	15.7	333.5
C9	N4	C10	C13	196.1	153.1
C10	C13	C6	H61C	288.7	181.5
C10	C13	C6	H62C	168.8	61.7
C6	C13	C10	H131	120.0	120.2
C6	C13	C10	H132	240.0	239.8
N4	C10	C13	H101	240.0	240.3
N4	C10	C13	H102	120.0	119.6
H131	C13	C10	H132	120.0	119.7
H101	C10	C13	H102	240.0	239.3
C1	N4	C10	C9	179.6	180.4
C10	N4	C9	O16	359.5	1.1
N4	C10	C13	H131	199.3	295.1
N4	C10	C13	H132	79.3	175.4
C13	C10	N4	H101	120.0	119.7
C13	C10	N4	H102	240.0	240.4
H101	C10	N4	H102	120.0	120.8
C19	C15	H15	C8	180.0	180.3
H15	C15	C19	C14	181.9	179.6
H15	C15	C19	H19	1.9	359.6
H15	C15	C8	C3	177.9	180.3
H15	C15	C8	H8	357.9	0.4
H19	C19	C15	C8	181.9	180.0
C15	C19	H19	C14	180.0	180.0
H19	C19	C15	H15	1.9	359.6
H19	C19	C14	C7	178.7	180.0
H19	C19	C14	H14	358.7	360.0
C15	C8	H8	C3	180.0	179.9
H8	C8	C15	H15	357.9	0.4
H8	C8	C3	C7	181.6	180.0
H8	C8	C3	C1	354.7	0.2
C19	C14	H14	C7	180.0	180.0
H14	C14	C19	H19	358.7	360.0
H14	C14	C7	C3	181.1	180.1
H14	C14	C7	C9	2.6	0.1
C22	C20	H20	C17	180.0	180.3
H20	C20	C22	N23	181.4	179.8
H20	C20	C22	H22	1.3	359.6
H20	C20	C17	C18	180.0	180.3
H20	C20	C17	N11	359.0	0.3
H22	C22	C20	C17	181.3	179.9
C20	C22	H22	N23	180.0	180.1
H22	C22	C20	H20	1.3	359.6
H22	C22	N23	C21	178.5	180.0
C18	C21	H21	N23	180.0	180.1
H21	C21	C18	C17	181.1	180.0
H21	C21	C18	N12	359.5	359.9
C18	N12	H12	C5	180.0	180.0
C2	C6	H61C	C13	235.9	239.5
C2	C6	H61C	H62C	118.0	119.7
H61C	C6	C13	C10	288.7	181.5
C13	C6	H61C	H62C	242.1	240.2
H61C	C6	C13	H131	48.8	301.6
H61C	C6	C13	H132	168.7	61.3
C2	C6	H62C	C13	124.1	120.4
C2	C6	H62C	H61C	242.0	240.3
H62C	C6	C13	C10	168.8	61.7
C13	C6	H62C	H61C	117.9	119.9
H62C	C6	C13	H131	288.8	181.9
H62C	C6	C13	H132	48.7	301.5
C6	C13	H131	C10	237.8	239.4
H131	C13	C6	H61C	48.8	301.6
H131	C13	C6	H62C	288.8	181.9
C6	C13	H131	H132	118.9	119.7
H131	C13	C10	N4	199.3	295.1
C10	C13	H131	H132	241.1	240.2
H131	C13	C10	H101	319.3	54.8
H131	C13	C10	H102	79.3	175.5
C6	C13	H132	C10	122.2	120.6
H132	C13	C6	H61C	168.7	61.3
H132	C13	C6	H62C	48.7	301.5
C6	C13	H132	H131	241.1	240.3
H132	C13	C10	N4	79.3	175.4
C10	C13	H132	H131	118.9	119.7
H132	C13	C10	H101	199.3	295.1
H132	C13	C10	H102	319.3	55.8
C13	C10	H101	N4	237.8	241.4
H101	C10	C13	H131	319.3	54.8
H101	C10	C13	H132	199.3	295.1
C13	C10	H101	H102	118.9	120.7
N4	C10	H101	H102	241.1	239.2
C13	C10	H102	N4	122.2	118.5
H102	C10	C13	H131	79.3	175.5
H102	C10	C13	H132	319.3	55.8
C13	C10	H102	H101	241.1	239.3
N4	C10	H102	H101	118.9	120.8