PDB Chemical Component YIR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YIR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OBC NAA 1.407 1.218
NAA OBB 1.414 1.218
NAA CAM 1.329 1.480
CAH CAM 1.524 1.376
CAH CAI 1.394 1.389
CAM CAL 1.397 1.392
CAI CAJ 1.389 1.365
CAL NAB 1.338 1.375
CAL CAK 1.396 1.408
CAJ CAK 1.394 1.401
NAB CAO 1.338 1.381
CAK CAN 1.508 1.417
CAO CAN 1.499 1.359
CAO CAP 1.520 1.471
OBD CAP 1.346 1.216
CAP NAC 1.339 1.347
NAC CAQ 1.338 1.397
CAQ CAR 1.405 1.390
CAQ CAV 1.397 1.391
CAR CAS 1.402 1.382
CAV CAU 1.393 1.378
CAS CAW 1.540 1.504
CAS CAT 1.394 1.396
CAW CAX 1.534 1.526
CAU CAT 1.405 1.397
CAX CAY 1.524 1.534
CAT CAZ 1.399 1.478
CAZ CAY 1.541 1.515
CAZ NAD 1.329 1.298
NAD NAE 1.243 1.401
NAE CBA 1.332 1.377
NAG CBA 1.322 1.304
CBA NAF 1.330 1.376
NAB HNAB 1.000 0.970
NAC HNAC 1.000 0.970
NAF H1AF 1.000 0.970
NAF H2AF 1.000 0.971
NAG HAG 1.000 0.969
CAH HAH 1.080 1.080
CAI HAI 1.080 1.080
CAJ HAJ 1.080 1.080
CAN HAN 1.080 1.079
CAR HAR 1.080 1.079
CAU HAU 1.081 1.080
CAV HAV 1.080 1.080
CAW H1AW 1.100 1.090
CAW H2AW 1.100 1.090
CAX H1AX 1.100 1.090
CAX H2AX 1.100 1.090
CAY H1AY 1.100 1.090
CAY H2AY 1.100 1.090
NAE HAE 1.000 0.969

Bond Angles for YIR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAM NAA OBB 123.1 119.9
NAA CAM CAH 115.9 120.1
NAA CAM CAL 120.5 120.1
CAI CAH CAM 112.8 120.7
CAH CAM CAL 123.6 119.8
CAM CAH HAH 123.6 119.7
CAH CAI CAJ 123.3 120.6
CAI CAH HAH 123.6 119.7
CAH CAI HAI 118.3 119.7
CAI CAJ CAK 121.8 119.8
CAJ CAI HAI 118.4 119.7
CAI CAJ HAJ 119.1 120.1
CAL NAB CAO 109.0 108.8
CAL NAB HNAB 125.5 125.6
CAL CAK CAN 108.0 107.0
CAJ CAK CAN 131.1 133.3
CAK CAJ HAJ 119.1 120.1
NAB CAO CAN 112.5 109.2
NAB CAO CAP 123.5 125.5
CAO NAB HNAB 125.5 125.7
CAK CAN HAN 130.6 126.2
CAO CAN HAN 130.5 126.2
CAP NAC CAQ 126.9 120.0
CAP NAC HNAC 116.6 120.0
NAC CAQ CAR 123.3 119.9
NAC CAQ CAV 116.9 119.8
CAQ NAC HNAC 116.6 120.0
CAR CAQ CAV 119.6 120.3
CAQ CAR CAS 120.3 120.3
CAQ CAR HAR 119.8 119.8
CAQ CAV CAU 120.0 119.8
CAQ CAV HAV 120.0 120.0
CAR CAS CAW 118.8 119.0
CAR CAS CAT 119.8 119.3
CAS CAR HAR 119.9 119.9
CAV CAU HAU 119.8 120.0
CAT CAS CAW 121.4 121.6
CAS CAW CAX 112.0 111.3
CAS CAW H1AW 108.6 109.1
CAS CAW H2AW 108.7 109.1
CAS CAT CAZ 117.2 120.1
CAW CAX CAY 112.8 109.4
CAX CAW H1AW 108.6 109.2
CAX CAW H2AW 108.6 109.1
CAW CAX H1AX 108.4 109.5
CAW CAX H2AX 108.4 109.5
CAU CAT CAZ 123.0 119.6
CAY CAX H1AX 108.4 109.5
CAY CAX H2AX 108.4 109.5
CAX CAY H1AY 108.3 109.9
CAX CAY H2AY 108.3 109.8
CAT CAZ CAY 124.7 117.6
CAZ CAY H1AY 108.3 109.9
CAZ CAY H2AY 108.3 109.9
NAD NAE CBA 118.5 120.0
NAD NAE HAE 120.7 120.0
NAE CBA NAG 119.9 120.0
NAE CBA NAF 121.8 120.0
CBA NAE HAE 120.7 120.0
CBA NAG HAG 112.0 120.0
CBA NAF H1AF 120.0 120.0
CBA NAF H2AF 120.0 120.0
H1AF NAF H2AF 120.0 120.0
H1AW CAW H2AW 110.3 109.0
H1AX CAX H2AX 110.6 109.5
H1AY CAY H2AY 110.7 109.9

Torsion Angles for YIR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OBB NAA CAM CAH 181.9 360.0
OBB NAA CAM CAL 0.8 180.0
CAI CAH CAM NAA 180.5 180.0
CAH CAM NAA CAL 181.1 180.0
NAA CAM CAH HAH 0.5 360.0
CAH CAM NAA OBB 181.9 360.0
NAA CAM CAH CAL 178.9 180.0
CAM CAH CAI CAJ 359.1 0.0
CAI CAH CAM HAH 180.0 180.0
CAM CAH CAI HAI 179.1 180.0
NAA CAM CAH CAI 180.5 180.0
CAI CAH CAM CAL 1.6 360.0
CAM CAH CAI HAH 180.0 180.0
CAH CAI CAJ CAK 359.4 360.0
CAJ CAI CAH HAI 180.0 180.1
CAH CAI CAJ HAJ 179.4 180.0
CAL CAM NAA OBB 0.8 180.0
NAA CAM CAL CAH 181.2 180.0
CAL CAM CAH HAH 181.6 179.9
CAM CAL NAB CAO 179.9 180.0
CAM CAL NAB HNAB 359.9 359.7
CAM CAL CAK CAN 178.9 180.2
CAJ CAI CAH CAM 359.1 0.0
CAJ CAI CAH HAH 179.1 180.1
CAH CAI CAJ HAI 180.0 179.9
CAI CAJ CAK CAN 181.9 179.7
CAK CAJ CAI HAJ 180.0 180.0
NAA CAM CAL NAB 359.2 360.0
CAL NAB CAO CAN 2.2 359.7
CAL NAB CAO CAP 183.2 179.8
CAO NAB CAL HNAB 180.0 180.3
NAA CAM CAL CAK 180.5 180.0
CAH CAM CAL CAK 359.3 0.1
CAK CAL NAB CAO 358.7 360.0
CAK CAL NAB HNAB 178.6 179.7
CAJ CAK CAL CAN 180.2 179.7
CAL CAK CAJ HAJ 181.7 180.0
CAL CAK CAN HAN 181.2 179.7
CAK CAJ CAI HAI 179.4 180.1
CAI CAJ CAK HAJ 180.0 180.0
CAL CAK CAJ CAN 179.8 180.4
CAJ CAK CAN HAN 1.0 0.0
CAL NAB CAO HNAB 180.0 179.7
NAB CAO CAN HAN 177.9 180.3
CAN CAK CAJ HAJ 1.9 359.7
NAB CAO CAN CAK 357.9 0.4
CAO CAN CAK HAN 180.0 179.9
NAB CAO CAN CAP 180.9 180.0
CAN CAO NAB HNAB 182.3 180.0
CAK CAN CAO HAN 180.0 180.1
NAB CAO CAP CAN 179.0 180.0
CAP CAO NAB HNAB 3.2 0.1
CAP CAO CAN HAN 357.0 0.3
CAO CAP NAC CAQ 184.7 184.6
CAO CAP NAC HNAC 4.7 4.6
OBD CAP NAC HNAC 189.1 184.6
NAB CAO CAP NAC 183.8 360.0
CAP NAC CAQ CAR 358.6 144.9
CAP NAC CAQ CAV 175.0 324.5
CAQ NAC CAP HNAC 180.0 180.1
CAP NAC CAQ HNAC 180.0 179.9
CAR CAQ NAC CAV 183.6 180.3
NAC CAQ CAR CAS 177.7 179.9
NAC CAQ CAR HAR 357.7 359.8
NAC CAQ CAV CAU 182.3 179.9
NAC CAQ CAV HAV 2.3 0.2
NAC CAQ CAR CAV 176.3 179.7
CAR CAQ NAC HNAC 178.6 325.0
CAR CAQ CAV CAU 358.9 359.6
CAR CAQ CAV HAV 178.8 179.8
CAQ CAR CAS CAW 179.4 179.7
CAQ CAR CAS CAT 359.5 359.9
CAS CAR CAQ HAR 180.0 180.1
NAC CAQ CAV CAR 183.4 180.3
CAV CAQ NAC HNAC 355.0 144.6
CAV CAQ CAR CAS 1.4 0.3
CAV CAQ CAR HAR 181.4 180.2
CAQ CAV CAU HAU 179.9 180.3
CAS CAR CAQ CAV 1.4 0.3
CAQ CAR CAS HAR 180.0 179.9
CAT CAS CAR CAW 180.2 180.1
CAR CAS CAW CAX 213.8 157.5
CAR CAS CAW H1AW 333.8 278.0
CAR CAS CAW H2AW 93.8 37.0
CAR CAS CAT CAZ 180.7 180.4
CAQ CAV CAU HAV 180.0 180.3
CAV CAU CAT CAZ 179.5 179.4
CAR CAS CAW CAT 180.2 180.1
CAW CAS CAR HAR 359.4 359.8
CAW CAS CAT CAZ 0.9 0.5
CAS CAW CAX CAY 310.8 54.7
CAX CAW CAS H1AW 240.0 239.5
CAX CAW CAS H2AW 120.0 120.5
CAS CAW CAX H1AX 70.8 174.7
CAS CAW CAX H2AX 190.9 294.7
H1AW CAW CAS H2AW 240.0 241.0
CAR CAS CAT CAW 179.8 179.9
CAT CAS CAR HAR 179.5 179.9
CAT CAS CAW CAX 33.6 337.3
CAT CAS CAW H1AW 153.6 97.8
CAT CAS CAW H2AW 273.6 216.9
CAU CAT CAS CAZ 178.5 179.8
CAS CAT CAZ CAY 340.0 348.6
CAS CAW CAX H1AW 120.0 120.5
CAS CAW CAX H2AW 240.0 239.5
CAY CAX CAW H1AX 240.0 240.0
CAY CAX CAW H2AX 120.0 120.0
CAW CAX CAY H1AY 152.6 55.4
CAW CAX CAY H2AY 272.6 176.4
H1AW CAW CAX H2AW 120.0 119.1
H1AX CAX CAW H2AX 240.0 240.0
CAQ CAV CAU CAT 359.9 0.5
CAU CAT CAS CAW 179.4 180.4
CAS CAT CAU CAZ 181.5 180.2
CAU CAT CAZ CAY 161.5 168.7
CAY CAX CAW H1AW 190.9 294.2
CAY CAX CAW H2AW 70.9 175.2
CAW CAX CAY H1AX 120.0 120.0
CAW CAX CAY H2AX 240.0 240.0
CAT CAZ CAY CAX 2.2 42.5
CAZ CAY CAX H1AY 240.0 240.5
CAZ CAY CAX H2AY 120.0 119.5
H1AX CAX CAY H2AX 120.0 120.0
H1AY CAY CAX H2AY 240.0 239.0
CAZ CAT CAS CAW 0.9 0.5
CAT CAZ CAY H1AY 242.3 283.0
CAT CAZ CAY H2AY 122.2 162.0
CAZ CAY CAX H1AX 272.6 176.0
CAZ CAY CAX H2AX 152.6 55.9
CAX CAY CAZ H1AY 120.0 119.5
CAX CAY CAZ H2AY 240.0 240.6
H1AY CAY CAZ H2AY 120.0 121.1
CAZ NAD NAE CBA 178.3 180.0
CAZ NAD NAE HAE 358.2 0.1
NAD NAE CBA NAG 1.4 0.1
NAD NAE CBA NAF 180.6 180.0
CBA NAE NAD HAE 180.0 179.9
NAD NAE CBA HAE 180.0 180.1
NAE CBA NAG HAG 179.2 180.0
NAE CBA NAF H1AF 180.9 0.0
NAE CBA NAF H2AF 0.9 180.1
NAE CBA NAG NAF 179.2 179.9
NAG CBA NAE HAE 181.5 180.0
NAG CBA NAF H1AF 0.0 179.9
NAG CBA NAF H2AF 180.0 360.0
NAE CBA NAF NAG 180.9 180.1
NAF CBA NAE HAE 0.6 359.9
H1AF NAF CBA H2AF 180.0 180.0
CAL NAB HNAB CAO 180.0 180.3
HNAB NAB CAO CAN 182.3 180.0
HNAB NAB CAO CAP 3.2 0.1
CAP NAC HNAC CAQ 180.0 180.1
HNAC NAC CAQ CAR 178.6 325.0
HNAC NAC CAQ CAV 355.0 144.6
CBA NAF H1AF H2AF 180.0 180.0
CBA NAF H2AF H1AF 180.0 180.0
CAI CAH HAH CAM 180.0 180.0
HAH CAH CAM CAL 181.6 179.9
HAH CAH CAI CAJ 179.1 180.1
HAH CAH CAI HAI 359.1 360.0
HAI CAI CAH CAM 179.1 180.0
CAH CAI HAI CAJ 180.0 180.1
HAI CAI CAH HAH 359.1 360.0
HAI CAI CAJ CAK 179.4 180.1
HAI CAI CAJ HAJ 359.4 0.0
CAI CAJ HAJ CAK 180.0 180.0
HAJ CAJ CAI HAI 359.4 0.0
HAJ CAJ CAK CAN 1.9 359.7
HAR CAR CAQ CAV 181.4 180.2
CAQ CAR HAR CAS 180.0 180.1
HAR CAR CAS CAW 359.4 359.8
HAR CAR CAS CAT 179.5 179.9
HAU CAU CAT CAZ 359.5 359.7
CAQ CAV HAV CAU 180.0 179.7
HAV CAV CAU HAU 359.9 0.0
CAS CAW H1AW CAX 238.0 238.2
CAS CAW H1AW H2AW 119.0 119.1
H1AW CAW CAX CAY 190.9 294.2
CAX CAW H1AW H2AW 241.1 240.9
H1AW CAW CAX H1AX 310.9 54.2
H1AW CAW CAX H2AX 70.9 174.2
CAS CAW H2AW CAX 122.0 121.8
CAS CAW H2AW H1AW 241.0 240.9
H2AW CAW CAX CAY 70.9 175.2
CAX CAW H2AW H1AW 119.0 119.1
H2AW CAW CAX H1AX 190.9 295.1
H2AW CAW CAX H2AX 310.9 55.1
CAW CAX H1AX CAY 237.3 240.1
H1AX CAX CAW H1AW 310.9 54.2
H1AX CAX CAW H2AW 190.9 295.1
CAW CAX H1AX H2AX 118.7 120.1
CAY CAX H1AX H2AX 241.4 240.0
H1AX CAX CAY H1AY 32.6 295.5
H1AX CAX CAY H2AY 152.6 56.5
CAW CAX H2AX CAY 122.7 119.9
H2AX CAX CAW H1AW 70.9 174.2
H2AX CAX CAW H2AW 310.9 55.1
CAW CAX H2AX H1AX 241.3 240.0
CAY CAX H2AX H1AX 118.6 120.0
H2AX CAX CAY H1AY 272.6 175.4
H2AX CAX CAY H2AY 32.6 296.5
H1AY CAY CAX H1AX 32.6 295.5
H1AY CAY CAX H2AX 272.6 175.4
CAX CAY H1AY H2AY 118.5 121.0
CAZ CAY H1AY H2AY 241.5 238.9
H2AY CAY CAX H1AX 152.6 56.5
H2AY CAY CAX H2AX 32.6 296.5
CAX CAY H2AY H1AY 241.5 239.0
CAZ CAY H2AY H1AY 118.5 121.1
NAD NAE HAE CBA 180.0 179.9
HAE NAE CBA NAG 181.5 180.0
HAE NAE CBA NAF 0.6 359.9