PDB Chemical Component YI5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YI5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
N2 |
1.248 |
1.272 |
| N1 |
S1 |
1.672 |
1.566 |
| N2 |
C3 |
1.355 |
1.322 |
| C3 |
C4 |
1.408 |
1.390 |
| C3 |
C6 |
1.405 |
1.482 |
| C4 |
C7 |
1.392 |
1.478 |
| C4 |
S1 |
1.694 |
1.773 |
| C6 |
C21 |
1.396 |
1.399 |
| C6 |
C25 |
1.403 |
1.393 |
| C7 |
C12 |
1.385 |
1.397 |
| C7 |
C16 |
1.386 |
1.396 |
| C12 |
C13 |
1.397 |
1.382 |
| C13 |
C14 |
1.397 |
1.393 |
| C13 |
OAN |
1.361 |
1.360 |
| C14 |
C15 |
1.385 |
1.386 |
| C14 |
O33 |
1.361 |
1.360 |
| C15 |
C16 |
1.385 |
1.381 |
| C21 |
C22 |
1.404 |
1.385 |
| C21 |
O30 |
1.354 |
1.359 |
| C22 |
C23 |
1.388 |
1.387 |
| C23 |
C24 |
1.402 |
1.389 |
| C23 |
O29 |
1.374 |
1.359 |
| C24 |
C25 |
1.408 |
1.381 |
| C24 |
CL |
1.744 |
1.735 |
| O33 |
C34 |
1.437 |
1.429 |
| CAB |
OAN |
1.454 |
1.429 |
| C25 |
H25 |
1.080 |
1.080 |
| C12 |
H12 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.079 |
| C15 |
H15 |
1.080 |
1.080 |
| C22 |
H22 |
1.081 |
1.080 |
| O30 |
H30 |
0.950 |
0.967 |
| O29 |
H29 |
0.950 |
0.967 |
| C34 |
H341 |
1.100 |
1.089 |
| C34 |
H342 |
1.101 |
1.090 |
| C34 |
H343 |
1.100 |
1.091 |
| CAB |
HAB1 |
1.100 |
1.090 |
| CAB |
HAB2 |
1.100 |
1.090 |
| CAB |
HAB3 |
1.100 |
1.090 |
Bond Angles for YI5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
S1 |
110.0 |
110.0 |
| N1 |
N2 |
C3 |
118.0 |
119.9 |
| N1 |
S1 |
C4 |
93.3 |
95.4 |
| N2 |
C3 |
C4 |
109.9 |
111.5 |
| N2 |
C3 |
C6 |
122.6 |
124.2 |
| C4 |
C3 |
C6 |
123.1 |
124.3 |
| C3 |
C4 |
C7 |
128.1 |
128.4 |
| C3 |
C4 |
S1 |
106.2 |
103.1 |
| C3 |
C6 |
C21 |
121.9 |
120.0 |
| C3 |
C6 |
C25 |
119.5 |
120.1 |
| C7 |
C4 |
S1 |
121.2 |
128.4 |
| C4 |
C7 |
C12 |
123.1 |
120.1 |
| C4 |
C7 |
C16 |
117.3 |
120.0 |
| C21 |
C6 |
C25 |
116.8 |
119.9 |
| C6 |
C21 |
C22 |
121.7 |
119.8 |
| C6 |
C21 |
O30 |
118.0 |
120.1 |
| C6 |
C25 |
C24 |
120.8 |
119.9 |
| C6 |
C25 |
H25 |
119.6 |
120.0 |
| C12 |
C7 |
C16 |
118.6 |
119.9 |
| C7 |
C12 |
C13 |
120.2 |
119.9 |
| C7 |
C12 |
H12 |
119.9 |
120.0 |
| C7 |
C16 |
C15 |
121.5 |
119.9 |
| C7 |
C16 |
H16 |
119.3 |
120.1 |
| C12 |
C13 |
C14 |
120.1 |
120.0 |
| C12 |
C13 |
OAN |
118.9 |
120.0 |
| C13 |
C12 |
H12 |
119.9 |
120.1 |
| C14 |
C13 |
OAN |
121.0 |
120.0 |
| C13 |
C14 |
C15 |
119.4 |
120.2 |
| C13 |
C14 |
O33 |
123.0 |
120.0 |
| C13 |
OAN |
CAB |
113.2 |
117.0 |
| C15 |
C14 |
O33 |
117.6 |
119.9 |
| C14 |
C15 |
C16 |
119.7 |
120.2 |
| C14 |
C15 |
H15 |
120.1 |
119.9 |
| C14 |
O33 |
C34 |
110.3 |
117.0 |
| C15 |
C16 |
H16 |
119.3 |
120.0 |
| C16 |
C15 |
H15 |
120.2 |
119.9 |
| C22 |
C21 |
O30 |
119.0 |
120.1 |
| C21 |
C22 |
C23 |
120.1 |
120.0 |
| C21 |
C22 |
H22 |
119.9 |
120.0 |
| C21 |
O30 |
H30 |
109.5 |
114.0 |
| C22 |
C23 |
C24 |
118.5 |
120.2 |
| C22 |
C23 |
O29 |
120.8 |
119.9 |
| C23 |
C22 |
H22 |
119.9 |
120.0 |
| C24 |
C23 |
O29 |
120.8 |
119.9 |
| C23 |
C24 |
C25 |
120.8 |
120.1 |
| C23 |
C24 |
CL |
118.3 |
119.9 |
| C23 |
O29 |
H29 |
109.5 |
114.0 |
| C25 |
C24 |
CL |
120.9 |
119.9 |
| C24 |
C25 |
H25 |
119.6 |
120.0 |
| O33 |
C34 |
H341 |
109.5 |
109.5 |
| O33 |
C34 |
H342 |
109.5 |
109.5 |
| O33 |
C34 |
H343 |
109.4 |
109.4 |
| OAN |
CAB |
HAB1 |
109.5 |
109.5 |
| OAN |
CAB |
HAB2 |
109.5 |
109.5 |
| OAN |
CAB |
HAB3 |
109.5 |
109.5 |
| H341 |
C34 |
H342 |
109.4 |
109.5 |
| H341 |
C34 |
H343 |
109.5 |
109.5 |
| H342 |
C34 |
H343 |
109.5 |
109.5 |
| HAB1 |
CAB |
HAB2 |
109.5 |
109.5 |
| HAB1 |
CAB |
HAB3 |
109.5 |
109.5 |
| HAB2 |
CAB |
HAB3 |
109.5 |
109.4 |
Torsion Angles for YI5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
S1 |
C4 |
5.2 |
0.0 |
| N1 |
N2 |
C3 |
C4 |
345.3 |
0.0 |
| N1 |
N2 |
C3 |
C6 |
188.3 |
180.1 |
| S1 |
N1 |
N2 |
C3 |
4.7 |
360.0 |
| C3 |
C4 |
S1 |
N1 |
347.4 |
0.0 |
| C7 |
C4 |
S1 |
N1 |
189.5 |
180.0 |
| C3 |
N2 |
N1 |
S1 |
4.7 |
360.0 |
| C4 |
C3 |
N2 |
C6 |
157.0 |
180.0 |
| N2 |
C3 |
C4 |
C7 |
172.6 |
180.0 |
| N2 |
C3 |
C4 |
S1 |
16.8 |
360.0 |
| N2 |
C3 |
C6 |
C21 |
308.2 |
293.5 |
| N2 |
C3 |
C6 |
C25 |
112.1 |
113.3 |
| N1 |
S1 |
C4 |
C3 |
347.4 |
0.0 |
| N2 |
C3 |
C4 |
C6 |
203.2 |
180.0 |
| C4 |
C3 |
C6 |
C21 |
154.3 |
113.6 |
| C4 |
C3 |
C6 |
C25 |
318.2 |
293.3 |
| C7 |
C4 |
C3 |
S1 |
155.8 |
180.0 |
| C3 |
C4 |
C7 |
C12 |
167.1 |
173.5 |
| C3 |
C4 |
C7 |
C16 |
335.7 |
353.1 |
| N2 |
C3 |
C6 |
C4 |
153.9 |
180.0 |
| C6 |
C3 |
C4 |
C7 |
329.5 |
360.0 |
| C6 |
C3 |
C4 |
S1 |
173.6 |
180.0 |
| C21 |
C6 |
C3 |
C25 |
196.1 |
180.2 |
| C3 |
C6 |
C21 |
C22 |
178.8 |
180.0 |
| C3 |
C6 |
C21 |
O30 |
345.5 |
0.0 |
| C3 |
C6 |
C25 |
C24 |
184.5 |
179.7 |
| C3 |
C6 |
C25 |
H25 |
4.6 |
359.9 |
| N1 |
S1 |
C4 |
C7 |
189.5 |
180.0 |
| C7 |
C4 |
C3 |
C6 |
329.5 |
360.0 |
| C3 |
C4 |
C7 |
S1 |
207.3 |
180.0 |
| C12 |
C7 |
C4 |
C16 |
191.4 |
180.3 |
| C4 |
C7 |
C12 |
C13 |
176.9 |
180.0 |
| C4 |
C7 |
C12 |
H12 |
356.9 |
359.9 |
| C4 |
C7 |
C16 |
C15 |
183.5 |
179.7 |
| C4 |
C7 |
C16 |
H16 |
3.5 |
0.1 |
| S1 |
C4 |
C3 |
C6 |
173.6 |
180.0 |
| C3 |
C4 |
S1 |
C7 |
157.9 |
180.0 |
| S1 |
C4 |
C7 |
C12 |
319.8 |
353.5 |
| S1 |
C4 |
C7 |
C16 |
128.3 |
173.1 |
| C3 |
C6 |
C21 |
C25 |
164.3 |
179.8 |
| C21 |
C6 |
C25 |
C24 |
349.2 |
359.4 |
| C21 |
C6 |
C25 |
H25 |
169.3 |
179.7 |
| C22 |
C21 |
C6 |
O30 |
193.3 |
180.0 |
| C6 |
C21 |
C22 |
C23 |
349.2 |
0.0 |
| C6 |
C21 |
C22 |
H22 |
169.1 |
180.0 |
| C6 |
C21 |
O30 |
H30 |
207.1 |
90.0 |
| C3 |
C6 |
C25 |
C21 |
195.3 |
180.2 |
| C25 |
C6 |
C21 |
C22 |
14.5 |
0.3 |
| C25 |
C6 |
C21 |
O30 |
181.2 |
180.3 |
| C23 |
C24 |
C25 |
C6 |
3.5 |
0.6 |
| C6 |
C25 |
C24 |
CL |
183.0 |
180.3 |
| C24 |
C25 |
C6 |
H25 |
180.0 |
179.7 |
| C12 |
C7 |
C4 |
S1 |
319.8 |
353.5 |
| C4 |
C7 |
C12 |
C16 |
168.4 |
179.7 |
| C12 |
C7 |
C16 |
C15 |
352.6 |
359.4 |
| C12 |
C7 |
C16 |
H16 |
172.6 |
179.7 |
| C7 |
C12 |
C13 |
C14 |
354.3 |
0.1 |
| C7 |
C12 |
C13 |
OAN |
175.6 |
180.0 |
| C13 |
C12 |
C7 |
H12 |
180.0 |
180.0 |
| C16 |
C7 |
C4 |
S1 |
128.3 |
173.1 |
| C4 |
C7 |
C16 |
C12 |
190.9 |
180.3 |
| C16 |
C7 |
C12 |
C13 |
8.5 |
0.3 |
| C16 |
C7 |
C12 |
H12 |
188.5 |
180.3 |
| C14 |
C15 |
C16 |
C7 |
3.3 |
0.6 |
| C15 |
C16 |
C7 |
H16 |
180.0 |
179.6 |
| C7 |
C16 |
C15 |
H15 |
183.2 |
180.3 |
| C13 |
C12 |
C7 |
C16 |
8.5 |
0.3 |
| C7 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
OAN |
178.7 |
180.1 |
| C12 |
C13 |
C14 |
C15 |
1.5 |
359.9 |
| C12 |
C13 |
C14 |
O33 |
181.9 |
179.9 |
| C12 |
C13 |
OAN |
CAB |
22.9 |
0.0 |
| C12 |
C13 |
C14 |
OAN |
181.3 |
179.9 |
| C14 |
C13 |
C12 |
H12 |
174.3 |
180.1 |
| C14 |
C13 |
OAN |
CAB |
204.2 |
179.9 |
| C15 |
C14 |
C13 |
O33 |
179.6 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
359.8 |
359.7 |
| C13 |
C14 |
C15 |
H15 |
179.8 |
180.0 |
| C13 |
C14 |
O33 |
C34 |
33.7 |
179.9 |
| C12 |
C13 |
OAN |
C14 |
178.7 |
180.1 |
| OAN |
C13 |
C12 |
H12 |
355.6 |
360.0 |
| OAN |
C13 |
C14 |
C15 |
180.1 |
180.0 |
| OAN |
C13 |
C14 |
O33 |
0.6 |
0.0 |
| C13 |
OAN |
CAB |
HAB1 |
303.2 |
180.0 |
| C13 |
OAN |
CAB |
HAB2 |
63.2 |
300.0 |
| C13 |
OAN |
CAB |
HAB3 |
183.2 |
60.0 |
| C7 |
C16 |
C15 |
C14 |
3.3 |
0.6 |
| C15 |
C14 |
C13 |
OAN |
180.1 |
180.0 |
| C13 |
C14 |
C15 |
O33 |
180.4 |
180.0 |
| C15 |
C14 |
O33 |
C34 |
214.1 |
360.0 |
| C14 |
C15 |
C16 |
H16 |
183.3 |
180.3 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.7 |
| O33 |
C14 |
C13 |
OAN |
0.6 |
0.0 |
| C13 |
C14 |
O33 |
C15 |
179.6 |
180.0 |
| O33 |
C14 |
C15 |
C16 |
179.4 |
179.7 |
| O33 |
C14 |
C15 |
H15 |
359.4 |
360.0 |
| C14 |
O33 |
C34 |
H341 |
348.7 |
180.0 |
| C14 |
O33 |
C34 |
H342 |
108.7 |
300.0 |
| C14 |
O33 |
C34 |
H343 |
228.7 |
60.0 |
| C7 |
C16 |
C15 |
H16 |
180.0 |
180.4 |
| C16 |
C15 |
C14 |
O33 |
179.4 |
179.7 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.3 |
| C22 |
C21 |
C6 |
C25 |
14.5 |
0.3 |
| C6 |
C21 |
C22 |
O30 |
166.6 |
180.0 |
| C22 |
C21 |
O30 |
H30 |
14.2 |
270.0 |
| C21 |
C22 |
C23 |
C24 |
2.9 |
360.0 |
| C21 |
C22 |
C23 |
O29 |
183.1 |
180.0 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
| O30 |
C21 |
C6 |
C25 |
181.2 |
180.3 |
| C6 |
C21 |
O30 |
C22 |
192.9 |
180.0 |
| O30 |
C21 |
C22 |
C23 |
182.6 |
180.0 |
| O30 |
C21 |
C22 |
H22 |
2.6 |
0.0 |
| C23 |
C22 |
C21 |
O30 |
182.6 |
180.0 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
O29 |
179.7 |
180.0 |
| C22 |
C23 |
C24 |
C25 |
0.7 |
359.7 |
| C22 |
C23 |
C24 |
CL |
181.2 |
180.0 |
| C22 |
C23 |
O29 |
H29 |
265.9 |
89.9 |
| C6 |
C25 |
C24 |
C23 |
3.5 |
0.6 |
| C22 |
C23 |
C24 |
O29 |
180.3 |
180.0 |
| C24 |
C23 |
C22 |
H22 |
182.9 |
180.0 |
| C24 |
C23 |
O29 |
H29 |
86.2 |
269.9 |
| C25 |
C24 |
C23 |
CL |
179.5 |
179.7 |
| C23 |
C24 |
C25 |
H25 |
183.4 |
180.3 |
| C22 |
C23 |
O29 |
C24 |
179.7 |
180.0 |
| O29 |
C23 |
C22 |
H22 |
3.2 |
359.9 |
| O29 |
C23 |
C24 |
C25 |
180.4 |
179.7 |
| O29 |
C23 |
C24 |
CL |
0.9 |
0.0 |
| C6 |
C25 |
C24 |
H25 |
180.0 |
180.3 |
| C25 |
C24 |
C23 |
O29 |
180.4 |
179.7 |
| C23 |
C24 |
C25 |
CL |
180.5 |
180.3 |
| CL |
C24 |
C23 |
O29 |
0.9 |
0.0 |
| C23 |
C24 |
CL |
C25 |
179.5 |
179.7 |
| CL |
C24 |
C25 |
H25 |
2.9 |
0.0 |
| H341 |
C34 |
O33 |
H342 |
240.0 |
240.0 |
| H341 |
C34 |
O33 |
H343 |
120.0 |
120.0 |
| H342 |
C34 |
O33 |
H343 |
240.0 |
240.0 |
| HAB1 |
CAB |
OAN |
HAB2 |
240.0 |
240.0 |
| HAB1 |
CAB |
OAN |
HAB3 |
120.0 |
120.0 |
| HAB2 |
CAB |
OAN |
HAB3 |
240.0 |
240.0 |
| C6 |
C25 |
H25 |
C24 |
180.0 |
179.7 |
| H25 |
C25 |
C24 |
CL |
2.9 |
0.0 |
| H12 |
C12 |
C7 |
C16 |
188.5 |
180.3 |
| C7 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
C14 |
174.3 |
180.1 |
| H12 |
C12 |
C13 |
OAN |
355.6 |
360.0 |
| C7 |
C16 |
H16 |
C15 |
180.0 |
179.6 |
| H16 |
C16 |
C15 |
H15 |
3.3 |
360.0 |
| H15 |
C15 |
C14 |
O33 |
359.4 |
360.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.7 |
| H15 |
C15 |
C16 |
H16 |
3.3 |
360.0 |
| H22 |
C22 |
C21 |
O30 |
2.6 |
0.0 |
| C21 |
C22 |
H22 |
C23 |
180.0 |
180.0 |
| H22 |
C22 |
C23 |
C24 |
182.9 |
180.0 |
| H22 |
C22 |
C23 |
O29 |
3.2 |
359.9 |
| O33 |
C34 |
H341 |
H342 |
120.0 |
120.0 |
| O33 |
C34 |
H341 |
H343 |
240.0 |
240.1 |
| H342 |
C34 |
H341 |
H343 |
120.0 |
120.0 |
| O33 |
C34 |
H342 |
H341 |
240.0 |
240.0 |
| O33 |
C34 |
H342 |
H343 |
120.0 |
119.9 |
| H341 |
C34 |
H342 |
H343 |
240.0 |
239.9 |
| O33 |
C34 |
H343 |
H341 |
120.0 |
120.0 |
| O33 |
C34 |
H343 |
H342 |
240.0 |
240.0 |
| H341 |
C34 |
H343 |
H342 |
120.0 |
120.1 |
| OAN |
CAB |
HAB1 |
HAB2 |
120.0 |
120.1 |
| OAN |
CAB |
HAB1 |
HAB3 |
240.0 |
240.0 |
| HAB2 |
CAB |
HAB1 |
HAB3 |
120.0 |
119.9 |
| OAN |
CAB |
HAB2 |
HAB1 |
240.0 |
239.9 |
| OAN |
CAB |
HAB2 |
HAB3 |
120.0 |
120.0 |
| HAB1 |
CAB |
HAB2 |
HAB3 |
240.0 |
240.0 |
| OAN |
CAB |
HAB3 |
HAB1 |
120.0 |
120.0 |
| OAN |
CAB |
HAB3 |
HAB2 |
240.0 |
240.0 |
| HAB1 |
CAB |
HAB3 |
HAB2 |
120.0 |
119.9 |