PDB Chemical Component YI4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YI4

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O04 C33 1.423 1.430
C33 C32 1.402 1.507
C32 C02 1.411 1.310
O01 C01 1.427 1.430
C02 C01 1.573 1.512
C02 C03 1.554 1.507
C01 C10 1.548 1.534
C03 O02 1.435 1.430
C03 C04 1.542 1.534
C10 C05 1.556 1.512
C04 C05 1.546 1.512
C05 C06 1.400 1.329
C06 C07 1.403 1.472
C07 C08 1.406 1.329
C15 C14 1.538 1.531
C15 C16 1.540 1.555
C08 C14 1.600 1.499
C08 C09 1.599 1.522
C14 C13 1.538 1.556
C18 C13 1.591 1.530
C16 C17 1.555 1.551
C09 C28 1.558 1.530
C09 C11 1.579 1.528
C28 C29 1.408 1.506
C13 C17 1.570 1.522
C13 C12 1.548 1.511
C27 C25 1.532 1.530
C29 C30 1.388 1.311
C17 C20 1.581 1.530
C24 C25 1.537 1.530
C24 C23 1.550 1.530
C11 C12 1.561 1.538
C22 C23 1.532 1.531
C22 C20 1.541 1.530
C25 O03 1.431 1.429
C25 C26 1.537 1.530
C20 C21 1.538 1.530
O03 H1 0.950 0.967
C26 H2 1.100 1.090
C26 H3 1.100 1.089
C26 H4 1.099 1.089
C27 H5 1.100 1.090
C27 H6 1.100 1.090
C27 H7 1.100 1.090
C24 H8 1.100 1.091
C24 H9 1.100 1.090
C23 H10 1.100 1.090
C23 H11 1.100 1.090
C22 H12 1.100 1.090
C22 H13 1.100 1.090
C20 H14 1.100 1.090
C21 H15 1.100 1.089
C21 H16 1.100 1.090
C21 H17 1.100 1.090
C17 H18 1.100 1.090
C16 H19 1.100 1.090
C16 H20 1.100 1.090
C15 H21 1.100 1.091
C15 H22 1.100 1.089
C14 H23 1.100 1.091
C18 H24 1.100 1.091
C18 H25 1.100 1.090
C18 H26 1.100 1.090
C12 H27 1.100 1.090
C12 H28 1.100 1.089
C11 H29 1.100 1.090
C11 H30 1.100 1.090
C09 H31 1.100 1.090
C28 H32 1.100 1.090
C28 H33 1.100 1.090
C29 H35 1.080 1.080
C30 H36 1.080 1.080
C30 H37 1.080 1.079
C07 H39 1.080 1.079
C06 H40 1.080 1.080
C10 H41 1.100 1.090
C10 H42 1.100 1.089
C01 H43 1.100 1.090
O01 H44 0.950 0.966
C04 H45 1.100 1.091
C04 H46 1.100 1.089
C03 H47 1.100 1.090
O02 H48 0.950 0.967
C32 H49 1.080 1.080
C33 H50 1.100 1.090
C33 H51 1.100 1.090
O04 H52 0.950 0.967

Bond Angles for YI4

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O04 C33 H50 109.2 109.5
O04 C33 H51 109.3 109.5
C33 C32 H49 113.7 120.0
O01 C01 H43 109.8 109.6
C02 C01 H43 107.9 109.6
C02 C03 H47 108.5 109.9
C01 C10 H41 108.4 109.6
C01 C10 H42 108.5 109.8
O02 C03 H47 110.2 109.6
C03 O02 H48 109.5 114.0
C03 C04 H45 108.6 109.6
C03 C04 H46 108.6 109.8
C05 C06 H40 113.7 120.0
C06 C07 H39 113.9 120.0
C15 C14 C13 105.7 101.3
C14 C15 H21 111.6 110.7
C14 C15 H22 111.6 110.7
C15 C14 H23 108.6 110.7
C15 C16 H19 110.3 110.0
C15 C16 H20 110.3 110.1
C08 C14 H23 107.8 111.1
C08 C09 H31 106.2 109.2
C14 C13 C12 110.7 107.6
C13 C14 H23 108.5 110.8
C18 C13 C12 106.2 108.9
C16 C17 H18 105.5 110.4
C09 C28 C29 117.8 109.5
C28 C09 H31 106.6 109.2
C09 C28 H32 107.3 109.4
C09 C28 H33 107.4 109.4
C09 C11 H29 107.3 109.0
C09 C11 H30 107.3 108.9
C28 C29 C30 120.3 120.0
C29 C28 H32 107.3 109.5
C29 C28 H33 107.3 109.5
C28 C29 H35 119.8 120.0
C13 C17 H18 105.4 110.3
C13 C12 H27 107.0 109.8
C13 C12 H28 106.9 109.9
C30 C29 H35 119.9 119.9
C29 C30 H36 120.0 119.9
C29 C30 H37 120.0 120.0
C17 C20 H14 107.5 109.5
C23 C24 H8 107.0 109.5
C23 C24 H9 107.1 109.5
C24 C23 H10 108.8 109.5
C24 C23 H11 108.8 109.5
C11 C12 H27 107.0 109.8
C11 C12 H28 107.0 109.9
C22 C23 H10 108.8 109.4
C22 C23 H11 108.8 109.5
C22 C20 C21 106.5 109.5
C20 C22 H12 108.7 109.5
C20 C22 H13 108.7 109.5
C22 C20 H14 107.9 109.5
C25 O03 H1 109.5 114.0
C25 C26 H2 109.5 109.4
C25 C26 H3 109.5 109.5
C25 C26 H4 109.5 109.5
C21 C20 H14 108.0 109.5
C20 C21 H15 109.5 109.5
C20 C21 H16 109.5 109.4
C20 C21 H17 109.4 109.4
H2 C26 H3 109.4 109.5
H2 C26 H4 109.4 109.5
H3 C26 H4 109.5 109.5
H5 C27 H6 109.5 109.5
H5 C27 H7 109.5 109.5
H6 C27 H7 109.5 109.5
H8 C24 H9 109.5 109.4
H10 C23 H11 109.5 109.5
H12 C22 H13 109.5 109.5
H15 C21 H16 109.5 109.5
H15 C21 H17 109.5 109.5
H16 C21 H17 109.4 109.4
H19 C16 H20 109.4 110.1
H21 C15 H22 109.5 110.8
H24 C18 H25 109.5 109.5
H24 C18 H26 109.5 109.5
H25 C18 H26 109.5 109.5
H27 C12 H28 109.5 109.8
H29 C11 H30 109.5 109.0
H32 C28 H33 109.5 109.5
H36 C30 H37 120.0 120.1
H41 C10 H42 109.5 109.7
H45 C04 H46 109.4 109.6
H50 C33 H51 109.5 109.5

Torsion Angles for YI4

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O04 C33 C32 H49 14.1 316.1
H50 C33 O04 H51 240.2 120.1
C32 C02 C01 H43 116.0 4.9
C32 C02 C03 H47 4.5 115.4
C02 C01 O01 H43 119.3 120.4
O01 C01 C10 H41 314.2 169.8
O01 C01 C10 H42 73.0 49.4
O01 C01 C02 H43 239.6 239.6
C02 C01 C10 H41 76.6 289.8
C02 C01 C10 H42 195.5 169.3
C03 C02 C01 H43 296.0 184.7
O02 C03 C02 H47 237.5 239.6
C02 C03 O02 H48 180.0 180.8
C02 C03 C04 H45 169.6 190.7
C02 C03 C04 H46 288.5 70.2
H41 C10 C01 H42 241.2 120.5
C02 C03 O02 H47 121.6 120.6
O02 C03 C04 H45 46.9 71.0
O02 C03 C04 H46 165.8 310.6
H45 C04 C03 H46 241.1 120.4
C10 C05 C06 H40 179.8 7.8
C04 C05 C06 H40 359.6 187.5
C05 C06 C07 H39 16.5 6.6
C07 C08 C14 H23 124.9 117.9
C07 C08 C09 H31 23.8 9.5
C14 C15 C16 H19 122.7 265.0
C14 C15 C16 H20 243.6 143.4
C08 C14 C15 H23 123.2 128.4
C15 C14 C13 C12 171.5 171.4
C13 C14 C15 H23 243.7 242.4
H21 C15 C14 H22 237.2 123.3
C15 C16 C17 H18 279.9 245.0
H19 C16 C15 H20 239.0 121.6
C08 C14 C15 H21 321.4 85.4
C08 C14 C15 H22 84.2 322.1
C15 C14 C08 H23 236.4 231.8
C13 C14 C08 H23 116.8 120.1
C09 C08 C14 H23 304.0 297.9
C28 C09 C08 H31 242.2 240.6
C08 C09 C28 H32 67.8 293.8
C08 C09 C28 H33 185.4 53.7
C08 C09 C11 H29 140.7 287.9
C08 C09 C11 H30 258.2 169.1
C13 C14 C15 H21 81.9 199.4
C13 C14 C15 H22 204.7 76.0
C15 C14 C13 H23 116.3 117.6
C08 C14 C13 H23 243.7 239.7
C18 C13 C14 C12 122.1 118.0
C14 C13 C17 H18 61.0 88.9
C14 C13 C12 H27 166.6 187.6
C14 C13 C12 H28 283.8 308.5
C14 C13 C18 C12 235.6 242.8
C18 C13 C14 H23 177.3 171.9
C18 C13 C17 H18 183.3 204.9
C18 C13 C12 H27 38.2 69.3
C18 C13 C12 H28 155.4 190.3
C13 C17 C16 H18 110.1 118.9
C16 C17 C20 H14 202.0 302.9
C08 C09 C28 H31 117.6 119.3
C28 C09 C11 H29 11.3 167.7
C28 C09 C11 H30 128.8 48.8
C09 C28 C29 C30 201.9 125.0
C29 C28 C09 H32 238.8 240.0
C29 C28 C09 H33 121.2 120.0
C09 C28 C29 H35 21.9 305.0
H32 C28 C09 H33 242.4 240.0
C09 C11 C12 H27 215.2 181.5
C09 C11 C12 H28 98.0 60.5
H29 C11 C09 H30 242.5 118.9
C29 C28 C09 H31 189.0 54.4
C09 C28 C29 H32 121.2 120.0
C09 C28 C29 H33 238.8 240.0
C30 C29 C28 H35 180.0 179.9
C28 C29 C30 H36 180.0 0.1
C28 C29 C30 H37 360.0 180.0
H32 C28 C29 H33 117.6 120.0
C16 C17 C13 H18 249.8 241.0
C13 C17 C20 H14 326.5 58.6
C12 C13 C14 H23 55.2 53.8
C12 C13 C17 H18 306.2 330.2
C11 C12 C13 H27 238.6 240.5
C11 C12 C13 H28 121.4 119.6
H27 C12 C13 H28 242.8 239.1
C27 C25 O03 H1 180.0 60.0
C27 C25 C26 H2 180.0 300.0
C27 C25 C26 H3 300.0 60.0
C27 C25 C26 H4 60.0 180.0
C30 C29 C28 H32 80.7 5.0
C30 C29 C28 H33 323.1 245.0
C28 C29 C30 H35 180.0 180.1
H36 C30 C29 H37 180.0 180.1
C17 C20 C22 H12 99.6 65.1
C17 C20 C22 H13 340.5 305.0
C22 C20 C17 H14 119.5 120.0
C21 C20 C17 H14 241.1 240.0
C17 C20 C21 H15 180.0 300.0
C17 C20 C21 H16 300.0 60.1
C17 C20 C21 H17 60.0 180.0
C24 C25 O03 H1 60.1 180.0
C24 C25 C26 H2 304.9 180.0
C24 C25 C26 H3 64.9 300.0
C24 C25 C26 H4 184.9 60.0
C22 C23 C24 H10 239.6 240.1
C22 C23 C24 H11 120.4 120.0
H8 C24 C23 H9 117.3 120.0
H10 C23 C24 H11 240.8 240.0
C13 C12 C11 H27 121.4 119.4
C13 C12 C11 H28 238.6 240.4
H27 C12 C11 H28 117.2 121.0
C22 C23 C24 H8 24.3 60.0
C22 C23 C24 H9 267.0 300.0
C24 C23 C22 H10 120.4 119.9
C24 C23 C22 H11 239.6 240.0
H10 C23 C22 H11 119.2 120.0
C17 C20 C22 H14 240.8 240.0
C20 C22 C23 H10 50.7 60.1
C20 C22 C23 H11 291.5 300.0
C21 C20 C22 H14 115.7 120.0
C22 C20 C21 H15 305.7 60.0
C22 C20 C21 H16 65.7 180.1
C22 C20 C21 H17 185.7 299.9
H12 C22 C20 H13 119.1 120.0
C26 C25 O03 H1 299.7 299.9
H2 C26 C25 H3 240.0 240.0
H2 C26 C25 H4 120.0 120.0
H3 C26 C25 H4 240.0 240.0
C17 C20 C21 H14 118.6 120.0
C21 C20 C22 H12 334.5 305.0
C21 C20 C22 H13 215.5 185.0
C22 C20 C21 H14 244.3 240.0
H15 C21 C20 H16 240.0 239.9
H15 C21 C20 H17 120.0 120.1
H16 C21 C20 H17 240.0 240.1
C25 C26 H2 H3 120.0 120.0
C25 C26 H2 H4 240.0 240.0
H3 C26 H2 H4 120.0 120.0
C25 C26 H3 H2 240.0 240.0
C25 C26 H3 H4 120.0 120.0
H2 C26 H3 H4 240.0 240.0
C25 C26 H4 H2 120.1 120.0
C25 C26 H4 H3 240.0 240.0
H2 C26 H4 H3 119.9 120.0
H6 C27 H5 H7 120.0 120.0
H5 C27 H6 H7 240.0 240.0
H5 C27 H7 H6 120.0 120.0
C23 C24 H8 H9 244.3 240.0
H8 C24 C23 H10 144.7 180.0
H8 C24 C23 H11 263.9 300.0
C23 C24 H9 H8 115.7 120.0
H9 C24 C23 H10 27.4 60.0
H9 C24 C23 H11 146.6 180.0
H10 C23 C24 H8 144.7 180.0
H10 C23 C24 H9 27.4 60.0
C24 C23 H10 H11 118.8 120.0
C22 C23 H10 H11 241.3 239.9
H11 C23 C24 H8 263.9 300.0
H11 C23 C24 H9 146.6 180.0
C24 C23 H11 H10 241.2 240.0
C22 C23 H11 H10 118.7 120.0
H12 C22 C23 H10 171.2 180.0
H12 C22 C23 H11 52.0 60.0
H12 C22 C20 C21 334.5 305.0
C20 C22 H12 H13 241.4 240.0
H12 C22 C20 H14 218.8 185.0
H13 C22 C23 H10 290.2 300.0
H13 C22 C23 H11 171.1 180.0
H13 C22 C20 C21 215.5 185.0
C20 C22 H13 H12 118.6 120.0
H13 C22 C20 H14 99.7 65.0
C22 C20 H14 C21 114.7 120.0
H14 C20 C22 H12 218.8 185.0
H14 C20 C22 H13 99.7 65.0
H14 C20 C21 H15 61.3 180.0
H14 C20 C21 H16 181.4 300.1
H14 C20 C21 H17 301.3 60.0
H15 C21 C20 H14 61.3 180.0
C20 C21 H15 H16 120.0 120.0
C20 C21 H15 H17 240.0 240.0
H16 C21 H15 H17 120.0 120.0
H16 C21 C20 H14 181.4 300.1
C20 C21 H16 H15 239.9 240.0
C20 C21 H16 H17 120.0 119.9
H15 C21 H16 H17 240.0 239.9
H17 C21 C20 H14 301.3 60.0
C20 C21 H17 H15 120.0 120.0
C20 C21 H17 H16 240.0 240.1
H15 C21 H17 H16 120.0 120.1
H18 C17 C20 H14 86.8 180.7
C15 C16 H19 H20 121.4 238.4
H19 C16 C17 H18 160.4 4.2
C15 C16 H20 H19 238.5 121.5
H20 C16 C17 H18 39.4 125.7
H21 C15 C14 C13 81.9 199.4
C14 C15 H21 H22 124.0 236.7
H21 C15 C14 H23 198.2 317.0
H21 C15 C16 H19 4.1 23.3
H21 C15 C16 H20 125.0 261.7
H22 C15 C14 C13 204.7 76.0
C14 C15 H22 H21 236.0 123.3
H22 C15 C14 H23 320.9 193.7
H22 C15 C16 H19 241.3 146.7
H22 C15 C16 H20 2.2 25.2
C15 C14 H23 C13 245.6 248.4
H23 C14 C15 H21 198.2 317.0
H23 C14 C15 H22 320.9 193.7
H23 C14 C13 C12 55.2 53.8
H24 C18 C13 C12 304.4 185.0
H25 C18 H24 H26 120.0 120.0
H25 C18 C13 C12 64.4 304.9
H24 C18 H25 H26 240.0 240.0
H26 C18 C13 C12 184.4 64.9
H24 C18 H26 H25 120.0 120.0
C13 C12 H27 H28 115.5 120.9
C11 C12 H27 H28 244.4 239.0
C13 C12 H28 H27 244.5 239.1
C11 C12 H28 H27 115.6 121.0
C09 C11 H29 H30 116.1 241.2
H29 C11 C12 H27 93.9 302.1
H29 C11 C12 H28 336.7 181.1
C09 C11 H30 H29 243.9 118.9
H30 C11 C12 H27 336.4 61.0
H30 C11 C12 H28 219.2 300.0
H31 C09 C28 C29 189.0 54.4
H31 C09 C28 H32 310.2 174.4
H31 C09 C28 H33 67.8 294.4
H31 C09 C11 H29 256.8 48.2
H31 C09 C11 H30 14.4 289.4
C09 C28 H32 C29 232.4 240.0
H32 C28 C09 H31 310.2 174.4
C09 C28 H32 H33 116.2 120.0
H32 C28 C29 C30 80.7 5.0
C29 C28 H32 H33 243.8 240.0
H32 C28 C29 H35 260.7 185.1
C09 C28 H33 C29 127.6 120.0
H33 C28 C09 H31 67.8 294.4
C09 C28 H33 H32 243.8 240.0
H33 C28 C29 C30 323.1 245.0
C29 C28 H33 H32 116.2 120.0
H33 C28 C29 H35 143.1 65.0
C28 C29 H35 C30 180.0 179.9
H35 C29 C28 H32 260.7 185.1
H35 C29 C28 H33 143.1 65.0
H35 C29 C30 H36 360.0 180.0
H35 C29 C30 H37 180.0 359.9
H36 C30 C29 H35 360.0 180.0
C29 C30 H36 H37 180.0 179.9
H37 C30 C29 H35 180.0 359.9
C29 C30 H37 H36 180.0 180.1
H40 C06 C07 H39 196.5 186.6
C01 C10 H41 H42 118.2 239.4
C01 C10 H42 H41 241.9 120.4
H43 C01 C10 H41 194.7 49.6
H43 C01 C10 H42 313.5 289.1
H44 O01 C01 H43 60.7 60.4
C03 C04 H45 H46 118.4 239.5
C03 C04 H46 H45 241.6 120.4
H47 C03 O02 H48 58.4 60.3
H47 C03 C04 H45 288.3 310.8
H47 C03 C04 H46 47.2 190.4
H48 O02 C03 H47 58.4 60.3
O04 C33 H50 H51 119.6 240.0
H50 C33 C32 H49 253.9 76.1
O04 C33 H51 H50 240.4 120.0
H51 C33 C32 H49 134.2 196.2
H52 O04 C33 H50 300.1 60.1
H52 O04 C33 H51 59.9 300.0