PDB Chemical Component YI2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YI2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O04 C31 1.433 1.429
C31 C30 1.399 1.507
C30 C02 1.414 1.310
O01 C01 1.425 1.429
C02 C01 1.580 1.512
C02 C03 1.544 1.506
C01 C10 1.560 1.535
C03 O02 1.434 1.430
C03 C04 1.546 1.534
C10 C05 1.566 1.511
C04 C05 1.552 1.512
C05 C06 1.396 1.329
C06 C07 1.401 1.471
C07 C08 1.407 1.329
C15 C14 1.527 1.530
C15 C16 1.543 1.526
C08 C14 1.580 1.501
C08 C09 1.560 1.509
C18 C13 1.581 1.530
C14 C13 1.558 1.555
C09 C11 1.543 1.527
C16 C17 1.373 1.327
C26 C28 1.542 1.531
C26 C24 1.551 1.531
C13 C17 1.549 1.480
C13 C12 1.567 1.500
C11 C12 1.575 1.539
C17 C20 1.586 1.507
C23 C24 1.541 1.530
C23 S22 1.848 1.814
C24 O03 1.437 1.429
C24 C27 1.568 1.530
C29 C27 1.546 1.529
C20 S22 1.856 1.814
C20 C21 1.543 1.530
C12 H1 1.100 1.090
C12 H2 1.100 1.090
C14 H3 1.100 1.090
C15 H4 1.100 1.090
C15 H5 1.100 1.090
C16 H6 1.080 1.080
C21 H8 1.100 1.090
C21 H9 1.100 1.090
C21 H10 1.100 1.090
C23 H11 1.100 1.090
C23 H12 1.101 1.089
C29 H13 1.100 1.090
C29 H14 1.100 1.089
C29 H15 1.100 1.090
C27 H16 1.101 1.090
C27 H17 1.101 1.090
C26 H18 1.100 1.090
C26 H19 1.100 1.090
C28 H20 1.100 1.090
C28 H21 1.100 1.089
C28 H22 1.100 1.090
O03 H23 0.950 0.967
C20 H24 1.100 1.090
C18 H26 1.100 1.090
C18 H27 1.099 1.091
C18 H28 1.100 1.091
C11 H29 1.100 1.090
C11 H30 1.100 1.090
C09 H31 1.100 1.090
C09 H32 1.101 1.090
C07 H33 1.080 1.080
C06 H34 1.080 1.080
C10 H35 1.100 1.090
C10 H36 1.100 1.090
C01 H37 1.100 1.090
O01 H38 0.950 0.968
C04 H39 1.100 1.090
C04 H40 1.100 1.089
C03 H41 1.100 1.090
O02 H42 0.950 0.967
C30 H43 1.080 1.079
C31 H44 1.100 1.090
C31 H45 1.100 1.090
O04 H46 0.950 0.967

Bond Angles for YI2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O04 C31 H44 109.6 109.5
O04 C31 H45 109.6 109.4
C31 C30 H43 113.0 120.0
O01 C01 H37 110.1 109.6
C02 C01 H37 108.0 109.6
C02 C03 H41 109.4 109.9
C01 C10 H35 108.8 109.6
C01 C10 H36 108.8 109.7
O02 C03 H41 111.0 109.6
C03 O02 H42 109.5 114.0
C03 C04 H39 108.2 109.6
C03 C04 H40 108.1 109.8
C05 C06 H34 115.6 120.0
C06 C07 H33 115.2 120.0
C15 C14 H3 109.3 111.5
C15 C16 C17 109.6 110.4
C16 C15 H4 112.6 110.8
C16 C15 H5 112.6 110.8
C15 C16 H6 125.2 124.8
C08 C14 H3 108.6 111.5
C08 C09 H31 108.6 109.5
C08 C09 H32 108.6 108.6
C14 C13 C17 95.7 104.2
C09 C11 H29 108.5 108.9
C09 C11 H30 108.5 108.9
C13 C17 C16 109.5 108.6
C16 C17 C20 126.6 125.7
C17 C16 H6 125.2 124.8
C28 C26 H18 107.5 109.5
C28 C26 H19 107.5 109.5
C26 C28 H20 109.5 109.5
C26 C28 H21 109.5 109.5
C26 C28 H22 109.5 109.4
C26 C24 O03 108.9 109.4
C13 C17 C20 123.9 125.7
C13 C12 H1 108.7 109.9
C13 C12 H2 108.7 109.9
C11 C12 H1 108.8 109.9
C11 C12 H2 108.8 109.9
C17 C20 H24 108.8 109.5
C24 C23 S22 118.7 109.4
C23 C24 O03 103.9 109.5
C23 C24 C27 112.4 109.5
C24 C23 H11 107.1 109.5
C24 C23 H12 107.1 109.5
S22 C23 H11 107.1 109.5
S22 C23 H12 107.1 109.5
C27 C24 O03 107.6 109.5
C24 O03 H23 109.5 113.9
C24 C27 C29 118.8 109.5
C24 C27 H16 107.1 109.5
C24 C27 H17 107.1 109.4
C27 C29 H13 109.5 109.4
C27 C29 H14 109.5 109.5
C27 C29 H15 109.4 109.5
C29 C27 H16 107.1 109.5
C29 C27 H17 107.1 109.5
C20 C21 H8 109.5 109.5
C20 C21 H9 109.5 109.4
C20 C21 H10 109.5 109.4
H1 C12 H2 109.5 109.9
H4 C15 H5 109.5 110.8
H8 C21 H9 109.5 109.5
H8 C21 H10 109.4 109.5
H9 C21 H10 109.4 109.5
H11 C23 H12 109.5 109.5
H13 C29 H14 109.5 109.5
H13 C29 H15 109.5 109.4
H14 C29 H15 109.5 109.5
H16 C27 H17 109.5 109.5
H18 C26 H19 109.5 109.5
H20 C28 H21 109.5 109.5
H20 C28 H22 109.5 109.5
H21 C28 H22 109.5 109.5
H26 C18 H27 109.5 109.5
H26 C18 H28 109.4 109.5
H27 C18 H28 109.5 109.4
H29 C11 H30 109.5 108.9
H31 C09 H32 109.5 109.2
H35 C10 H36 109.4 109.6
H39 C04 H40 109.5 109.6
H44 C31 H45 109.5 109.5

Torsion Angles for YI2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O04 C31 C30 H43 357.1 313.6
H44 C31 O04 H45 239.8 120.0
C30 C02 C01 H37 119.9 5.0
C30 C02 C03 H41 2.3 115.4
C02 C01 O01 H37 120.5 120.5
O01 C01 C10 H35 312.7 169.8
O01 C01 C10 H36 71.8 49.4
O01 C01 C02 H37 238.3 239.5
C02 C01 C10 H35 75.7 289.7
C02 C01 C10 H36 194.9 169.3
C03 C02 C01 H37 299.2 184.7
O02 C03 C02 H41 236.2 239.6
C02 C03 O02 H42 180.0 180.9
C02 C03 C04 H39 169.7 190.7
C02 C03 C04 H40 288.1 70.2
H35 C10 C01 H36 240.8 120.4
C02 C03 O02 H41 122.9 120.6
O02 C03 C04 H39 48.7 71.1
O02 C03 C04 H40 167.2 310.7
H39 C04 C03 H40 241.5 120.5
C10 C05 C06 H34 179.6 6.2
C04 C05 C06 H34 359.4 185.9
C05 C06 C07 H33 11.9 5.4
C07 C08 C14 H3 126.4 118.8
C07 C08 C09 H31 247.9 7.7
C07 C08 C09 H32 6.9 248.6
C08 C14 C15 H3 126.2 131.2
C15 C14 C13 C17 47.7 38.1
C16 C15 C14 H3 67.6 81.6
C13 C17 C16 C15 0.0 1.9
C15 C16 C17 C20 180.6 181.9
C17 C16 C15 H6 180.0 180.1
H4 C15 C16 H5 124.4 123.5
C15 C14 C08 H3 233.4 228.8
C09 C08 C14 H3 305.1 297.9
C08 C09 C11 H29 164.3 286.6
C08 C09 C11 H30 283.2 168.0
H31 C09 C08 H32 241.0 119.1
C18 C13 C12 H1 49.0 73.4
C18 C13 C12 H2 168.1 194.4
C14 C13 C17 C16 330.9 333.8
C14 C13 C17 C20 150.3 153.8
C14 C13 C12 H1 180.5 187.3
C14 C13 C12 H2 299.7 308.3
C09 C11 C12 H1 190.6 183.4
C09 C11 C12 H2 71.4 62.4
H29 C11 C09 H30 241.2 118.7
C17 C16 C15 H4 271.9 265.1
C17 C16 C15 H5 147.6 141.6
C15 C16 C17 H6 180.0 179.9
C13 C17 C16 C20 179.4 180.0
C16 C17 C20 H24 119.2 230.0
C28 C26 C24 O03 58.8 65.0
H18 C26 C28 H19 242.2 120.0
H20 C28 C26 H21 240.0 240.0
H20 C28 C26 H22 120.0 120.0
H21 C28 C26 H22 240.0 240.0
C26 C24 C23 S22 165.5 174.6
C23 C24 C26 O03 113.0 120.0
C26 C24 C23 H11 286.8 294.6
C26 C24 C23 H12 44.2 54.7
C27 C24 C26 O03 239.9 240.0
C26 C24 O03 H23 180.0 60.0
C26 C24 C27 H16 58.6 63.4
C26 C24 C27 H17 176.0 183.4
C15 C16 C17 C13 0.0 1.9
C16 C17 C13 C20 180.6 180.0
C13 C17 C16 H6 180.0 182.0
C17 C13 C12 H1 286.2 308.9
C17 C13 C12 H2 45.4 69.9
C13 C17 C20 H24 299.9 50.0
C11 C12 C13 H1 239.6 240.5
C11 C12 C13 H2 120.4 119.5
H1 C12 C13 H2 240.8 239.0
C13 C12 C11 H1 120.4 119.5
C13 C12 C11 H2 239.6 240.5
H1 C12 C11 H2 119.2 121.0
C13 C17 C20 C16 180.7 180.0
C20 C17 C16 H6 0.6 2.0
C17 C20 C21 H8 180.0 300.0
C17 C20 C21 H9 300.0 60.0
C17 C20 C21 H10 60.0 180.0
C26 C24 C23 O03 243.8 240.0
S22 C23 C24 H11 238.7 240.0
S22 C23 C24 H12 121.3 120.0
C27 C24 C23 O03 116.0 120.0
C23 C24 O03 H23 63.4 300.1
C23 C24 C27 C29 62.7 63.4
C23 C24 C27 H16 184.0 183.4
C23 C24 C27 H17 301.4 303.4
H11 C23 C24 H12 242.6 240.0
S22 C23 C24 O03 281.7 294.6
S22 C23 C24 C27 37.7 54.6
C24 C23 S22 H11 121.3 120.0
C24 C23 S22 H12 238.7 240.0
H11 C23 S22 H12 117.4 120.0
O03 C24 C23 S22 281.7 294.6
C23 C24 O03 C27 119.3 120.1
O03 C24 C23 H11 43.0 54.6
O03 C24 C23 H12 160.4 174.6
O03 C24 C27 C29 176.4 183.4
O03 C24 C27 H16 297.7 303.5
O03 C24 C27 H17 55.1 63.4
C26 C24 C27 O03 120.8 120.0
C27 C24 C23 S22 37.7 54.6
C23 C24 C27 O03 246.3 239.9
C27 C24 C23 H11 159.0 174.6
C27 C24 C23 H12 276.4 294.7
C27 C24 O03 H23 304.0 180.0
C24 C27 C29 H13 180.0 175.9
C24 C27 C29 H14 300.0 295.9
C24 C27 C29 H15 60.0 56.0
C29 C27 C24 H16 238.7 240.0
C29 C27 C24 H17 121.3 120.0
H16 C27 C24 H17 242.6 240.0
C29 C27 C24 O03 176.4 183.4
C24 C27 C29 H16 121.3 120.0
C24 C27 C29 H17 238.7 240.0
H13 C29 C27 H14 240.0 240.0
H13 C29 C27 H15 120.0 119.9
H14 C29 C27 H15 240.0 240.0
H16 C27 C29 H17 117.4 120.0
C16 C17 C20 S22 235.3 350.0
C13 C17 C20 S22 56.0 170.0
C20 S22 C23 H11 8.4 60.0
C20 S22 C23 H12 251.1 300.0
S22 C20 C21 H8 303.5 60.0
S22 C20 C21 H9 63.6 180.0
S22 C20 C21 H10 183.5 299.9
C16 C17 C20 C21 359.3 109.9
C13 C17 C20 C21 180.0 289.9
H8 C21 C20 H9 240.0 240.0
H8 C21 C20 H10 120.0 120.1
H9 C21 C20 H10 240.0 240.0
C13 C12 H1 H2 118.7 121.0
C11 C12 H1 H2 241.3 239.0
C13 C12 H2 H1 241.3 239.0
C11 C12 H2 H1 118.7 121.0
H3 C14 C13 C17 291.9 280.9
H4 C15 C14 H3 185.4 199.9
H4 C15 C16 C17 271.9 265.1
C16 C15 H4 H5 233.9 236.5
H4 C15 C16 H6 91.9 85.0
H5 C15 C14 H3 309.8 323.3
H5 C15 C16 C17 147.6 141.6
C16 C15 H5 H4 126.1 123.5
H5 C15 C16 H6 327.6 321.6
C15 C16 H6 C17 180.0 180.1
H6 C16 C15 H4 91.9 85.0
H6 C16 C15 H5 327.6 321.6
H6 C16 C17 C20 0.6 2.0
C20 C21 H8 H9 120.0 120.0
C20 C21 H8 H10 240.0 240.0
H9 C21 H8 H10 120.0 120.0
C20 C21 H9 H8 239.9 240.0
C20 C21 H9 H10 120.0 119.9
H8 C21 H9 H10 240.0 239.9
C20 C21 H10 H8 120.1 120.0
C20 C21 H10 H9 240.0 240.1
H8 C21 H10 H9 120.0 120.0
C24 C23 H11 S22 231.6 240.0
H11 C23 C24 O03 43.0 54.6
H11 C23 C24 C27 159.0 174.6
C24 C23 H11 H12 115.8 120.0
S22 C23 H11 H12 244.2 240.0
C24 C23 H12 S22 128.4 120.0
H12 C23 C24 O03 160.4 174.6
H12 C23 C24 C27 276.4 294.7
C24 C23 H12 H11 244.2 240.0
S22 C23 H12 H11 115.8 120.0
C27 C29 H13 H14 120.0 120.0
C27 C29 H13 H15 240.0 240.0
H13 C29 C27 H16 58.7 55.9
H13 C29 C27 H17 301.3 295.9
H14 C29 H13 H15 120.0 120.0
C27 C29 H14 H13 240.0 240.0
C27 C29 H14 H15 120.0 120.0
H14 C29 C27 H16 178.7 175.9
H14 C29 C27 H17 61.3 55.9
H13 C29 H14 H15 240.0 240.0
C27 C29 H15 H13 120.0 119.9
C27 C29 H15 H14 240.0 240.0
H15 C29 C27 H16 298.7 296.0
H15 C29 C27 H17 181.3 176.0
H13 C29 H15 H14 120.0 120.0
H16 C27 C24 O03 297.7 303.5
C24 C27 H16 C29 231.6 240.0
C24 C27 H16 H17 115.8 120.0
H16 C27 C29 H13 58.7 55.9
H16 C27 C29 H14 178.7 175.9
H16 C27 C29 H15 298.7 296.0
C29 C27 H16 H17 244.2 240.0
H17 C27 C24 O03 55.1 63.4
C24 C27 H17 C29 128.4 120.0
C24 C27 H17 H16 244.2 240.0
H17 C27 C29 H13 301.3 295.9
H17 C27 C29 H14 61.3 55.9
H17 C27 C29 H15 181.3 176.0
C29 C27 H17 H16 115.8 120.0
C28 C26 H18 H19 116.6 240.0
H18 C26 C28 H20 301.1 180.1
H18 C26 C28 H21 61.1 300.1
H18 C26 C28 H22 181.1 60.0
H18 C26 C24 O03 297.7 185.0
C28 C26 H19 H18 243.4 120.0
H19 C26 C28 H20 59.0 60.0
H19 C26 C28 H21 179.0 180.0
H19 C26 C28 H22 298.9 300.0
H19 C26 C24 O03 179.9 305.0
H20 C28 C26 H18 301.1 180.1
H20 C28 C26 H19 59.0 60.0
C26 C28 H20 H21 120.0 120.0
C26 C28 H20 H22 240.0 240.0
H21 C28 H20 H22 120.0 120.1
H21 C28 C26 H18 61.1 300.1
H21 C28 C26 H19 179.0 180.0
C26 C28 H21 H20 240.0 240.0
C26 C28 H21 H22 120.0 119.9
H20 C28 H21 H22 240.0 239.9
H22 C28 C26 H18 181.1 60.0
H22 C28 C26 H19 298.9 300.0
C26 C28 H22 H20 120.1 120.0
C26 C28 H22 H21 240.0 240.1
H20 C28 H22 H21 120.0 120.1
H24 C20 C21 H8 60.4 180.0
H24 C20 C21 H9 180.5 300.0
H24 C20 C21 H10 300.4 59.9
H27 C18 H26 H28 120.0 120.0
H26 C18 H27 H28 240.0 240.0
H26 C18 H28 H27 120.0 120.0
C09 C11 H29 H30 118.2 241.4
H29 C11 C12 H1 70.0 304.1
H29 C11 C12 H2 310.8 183.1
C09 C11 H30 H29 241.8 118.7
H30 C11 C12 H1 311.1 62.9
H30 C11 C12 H2 191.9 301.9
C08 C09 H31 H32 118.4 241.2
H31 C09 C11 H29 43.8 47.6
H31 C09 C11 H30 162.6 288.9
C08 C09 H32 H31 241.5 119.3
H32 C09 C11 H29 284.8 166.9
H32 C09 C11 H30 43.7 48.2
H34 C06 C07 H33 191.9 185.4
C01 C10 H35 H36 118.8 239.5
C01 C10 H36 H35 241.2 120.4
H37 C01 C10 H35 193.8 49.4
H37 C01 C10 H36 313.0 289.0
H38 O01 C01 H37 59.5 60.4
C03 C04 H39 H40 117.6 239.5
C03 C04 H40 H39 242.4 120.4
H41 C03 O02 H42 57.2 60.4
H41 C03 C04 H39 288.6 310.8
H41 C03 C04 H40 47.1 190.3
H42 O02 C03 H41 57.2 60.4
O04 C31 H44 H45 120.3 240.0
H44 C31 C30 H43 237.2 73.6
O04 C31 H45 H44 239.7 120.0
H45 C31 C30 H43 117.0 193.6
H46 O04 C31 H44 299.9 60.0
H46 O04 C31 H45 60.0 300.0