PDB Chemical Component YI0
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YI0
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
N2 |
1.299 |
1.273 |
| N1 |
S1 |
1.619 |
1.566 |
| N2 |
C3 |
1.363 |
1.323 |
| C3 |
C4 |
1.409 |
1.391 |
| C3 |
C6 |
1.442 |
1.482 |
| C4 |
C7 |
1.406 |
1.477 |
| C4 |
S1 |
1.758 |
1.774 |
| C6 |
C21 |
1.380 |
1.399 |
| C6 |
C25 |
1.426 |
1.394 |
| C7 |
C12 |
1.373 |
1.396 |
| C7 |
C16 |
1.384 |
1.397 |
| C12 |
C13 |
1.363 |
1.379 |
| C13 |
C14 |
1.382 |
1.389 |
| C14 |
C15 |
1.387 |
1.389 |
| C14 |
O33 |
1.357 |
1.359 |
| C15 |
C16 |
1.382 |
1.379 |
| C21 |
C22 |
1.435 |
1.385 |
| C21 |
O30 |
1.343 |
1.359 |
| C22 |
C23 |
1.405 |
1.388 |
| C23 |
C24 |
1.398 |
1.389 |
| C23 |
O29 |
1.358 |
1.359 |
| C24 |
C25 |
1.351 |
1.380 |
| C24 |
CL |
1.810 |
1.735 |
| O33 |
C34 |
1.450 |
1.429 |
| C25 |
H25 |
1.080 |
1.079 |
| C12 |
H12 |
1.080 |
1.080 |
| C16 |
H16 |
1.079 |
1.080 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C22 |
H22 |
1.080 |
1.079 |
| O30 |
H30 |
0.950 |
0.968 |
| O29 |
H29 |
0.950 |
0.966 |
| C34 |
H341 |
1.099 |
1.090 |
| C34 |
H342 |
1.100 |
1.090 |
| C34 |
H343 |
1.100 |
1.091 |
Bond Angles for YI0
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
S1 |
117.0 |
110.0 |
| N1 |
N2 |
C3 |
110.3 |
119.8 |
| N1 |
S1 |
C4 |
92.2 |
95.5 |
| N2 |
C3 |
C4 |
116.2 |
111.6 |
| N2 |
C3 |
C6 |
121.6 |
124.2 |
| C4 |
C3 |
C6 |
122.2 |
124.2 |
| C3 |
C4 |
C7 |
133.0 |
128.5 |
| C3 |
C4 |
S1 |
104.4 |
103.0 |
| C3 |
C6 |
C21 |
122.0 |
120.1 |
| C3 |
C6 |
C25 |
118.1 |
120.1 |
| C7 |
C4 |
S1 |
122.6 |
128.5 |
| C4 |
C7 |
C12 |
120.2 |
120.1 |
| C4 |
C7 |
C16 |
125.2 |
120.1 |
| C21 |
C6 |
C25 |
119.8 |
119.8 |
| C6 |
C21 |
C22 |
124.7 |
119.8 |
| C6 |
C21 |
O30 |
119.9 |
120.1 |
| C6 |
C25 |
C24 |
114.6 |
120.0 |
| C6 |
C25 |
H25 |
122.7 |
120.0 |
| C12 |
C7 |
C16 |
114.4 |
119.8 |
| C7 |
C12 |
C13 |
125.4 |
119.9 |
| C7 |
C12 |
H12 |
117.3 |
120.0 |
| C7 |
C16 |
C15 |
123.0 |
119.9 |
| C7 |
C16 |
H16 |
118.5 |
120.1 |
| C12 |
C13 |
C14 |
118.4 |
120.1 |
| C13 |
C12 |
H12 |
117.3 |
120.0 |
| C12 |
C13 |
H13 |
120.8 |
120.0 |
| C13 |
C14 |
C15 |
119.2 |
120.2 |
| C13 |
C14 |
O33 |
126.3 |
119.9 |
| C14 |
C13 |
H13 |
120.8 |
120.0 |
| C15 |
C14 |
O33 |
114.3 |
119.9 |
| C14 |
C15 |
C16 |
119.4 |
120.1 |
| C14 |
C15 |
H15 |
120.3 |
119.9 |
| C14 |
O33 |
C34 |
116.3 |
117.0 |
| C15 |
C16 |
H16 |
118.5 |
120.0 |
| C16 |
C15 |
H15 |
120.3 |
120.0 |
| C22 |
C21 |
O30 |
115.2 |
120.1 |
| C21 |
C22 |
C23 |
113.5 |
120.0 |
| C21 |
C22 |
H22 |
123.3 |
120.0 |
| C21 |
O30 |
H30 |
109.5 |
113.9 |
| C22 |
C23 |
C24 |
119.7 |
120.2 |
| C22 |
C23 |
O29 |
118.7 |
119.9 |
| C23 |
C22 |
H22 |
123.3 |
120.0 |
| C24 |
C23 |
O29 |
120.5 |
119.9 |
| C23 |
C24 |
C25 |
127.1 |
120.2 |
| C23 |
C24 |
CL |
116.7 |
119.9 |
| C23 |
O29 |
H29 |
109.5 |
114.0 |
| C25 |
C24 |
CL |
116.1 |
119.9 |
| C24 |
C25 |
H25 |
122.7 |
120.1 |
| O33 |
C34 |
H341 |
109.5 |
109.5 |
| O33 |
C34 |
H342 |
109.5 |
109.5 |
| O33 |
C34 |
H343 |
109.5 |
109.4 |
| H341 |
C34 |
H342 |
109.5 |
109.5 |
| H341 |
C34 |
H343 |
109.5 |
109.4 |
| H342 |
C34 |
H343 |
109.4 |
109.4 |
Torsion Angles for YI0
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
N1 |
S1 |
C4 |
359.8 |
0.0 |
| N1 |
N2 |
C3 |
C4 |
358.7 |
360.0 |
| N1 |
N2 |
C3 |
C6 |
179.7 |
180.0 |
| S1 |
N1 |
N2 |
C3 |
0.9 |
360.0 |
| C3 |
C4 |
S1 |
N1 |
359.5 |
360.0 |
| C7 |
C4 |
S1 |
N1 |
179.7 |
180.0 |
| C3 |
N2 |
N1 |
S1 |
0.9 |
360.0 |
| C4 |
C3 |
N2 |
C6 |
179.0 |
180.0 |
| N2 |
C3 |
C4 |
C7 |
180.8 |
179.9 |
| N2 |
C3 |
C4 |
S1 |
1.1 |
0.0 |
| N2 |
C3 |
C6 |
C21 |
309.6 |
293.5 |
| N2 |
C3 |
C6 |
C25 |
125.9 |
113.3 |
| N1 |
S1 |
C4 |
C3 |
359.5 |
360.0 |
| N2 |
C3 |
C4 |
C6 |
181.0 |
180.0 |
| C4 |
C3 |
C6 |
C21 |
130.7 |
113.5 |
| C4 |
C3 |
C6 |
C25 |
307.0 |
293.3 |
| C7 |
C4 |
C3 |
S1 |
179.8 |
179.9 |
| C3 |
C4 |
C7 |
C12 |
302.0 |
173.4 |
| C3 |
C4 |
C7 |
C16 |
117.4 |
353.2 |
| N2 |
C3 |
C6 |
C4 |
178.9 |
180.0 |
| C6 |
C3 |
C4 |
C7 |
359.8 |
359.9 |
| C6 |
C3 |
C4 |
S1 |
180.1 |
180.0 |
| C21 |
C6 |
C3 |
C25 |
183.8 |
180.3 |
| C3 |
C6 |
C21 |
C22 |
184.0 |
180.0 |
| C3 |
C6 |
C21 |
O30 |
358.7 |
360.0 |
| C3 |
C6 |
C25 |
C24 |
180.7 |
179.7 |
| C3 |
C6 |
C25 |
H25 |
0.7 |
0.0 |
| N1 |
S1 |
C4 |
C7 |
179.7 |
180.0 |
| C7 |
C4 |
C3 |
C6 |
359.8 |
359.9 |
| C3 |
C4 |
C7 |
S1 |
180.3 |
180.1 |
| C12 |
C7 |
C4 |
C16 |
184.6 |
180.2 |
| C4 |
C7 |
C12 |
C13 |
179.3 |
180.0 |
| C4 |
C7 |
C12 |
H12 |
359.3 |
0.0 |
| C4 |
C7 |
C16 |
C15 |
183.5 |
179.7 |
| C4 |
C7 |
C16 |
H16 |
3.5 |
360.0 |
| S1 |
C4 |
C3 |
C6 |
180.1 |
180.0 |
| C3 |
C4 |
S1 |
C7 |
179.8 |
179.9 |
| S1 |
C4 |
C7 |
C12 |
121.7 |
353.3 |
| S1 |
C4 |
C7 |
C16 |
297.1 |
173.1 |
| C3 |
C6 |
C21 |
C25 |
176.2 |
179.7 |
| C21 |
C6 |
C25 |
C24 |
357.0 |
359.4 |
| C21 |
C6 |
C25 |
H25 |
177.0 |
179.8 |
| C22 |
C21 |
C6 |
O30 |
185.3 |
180.0 |
| C6 |
C21 |
C22 |
C23 |
350.3 |
0.0 |
| C6 |
C21 |
C22 |
H22 |
170.3 |
180.1 |
| C6 |
C21 |
O30 |
H30 |
180.0 |
90.0 |
| C3 |
C6 |
C25 |
C21 |
183.7 |
180.3 |
| C25 |
C6 |
C21 |
C22 |
7.8 |
0.2 |
| C25 |
C6 |
C21 |
O30 |
182.5 |
180.2 |
| C23 |
C24 |
C25 |
C6 |
1.1 |
0.6 |
| C6 |
C25 |
C24 |
CL |
177.3 |
180.3 |
| C24 |
C25 |
C6 |
H25 |
180.0 |
179.6 |
| C12 |
C7 |
C4 |
S1 |
121.7 |
353.3 |
| C4 |
C7 |
C12 |
C16 |
175.9 |
179.8 |
| C12 |
C7 |
C16 |
C15 |
359.1 |
359.4 |
| C12 |
C7 |
C16 |
H16 |
179.2 |
179.8 |
| C7 |
C12 |
C13 |
C14 |
354.4 |
0.1 |
| C13 |
C12 |
C7 |
H12 |
180.0 |
180.0 |
| C7 |
C12 |
C13 |
H13 |
174.4 |
180.0 |
| C16 |
C7 |
C4 |
S1 |
297.1 |
173.1 |
| C4 |
C7 |
C16 |
C12 |
184.3 |
180.2 |
| C16 |
C7 |
C12 |
C13 |
3.4 |
0.2 |
| C16 |
C7 |
C12 |
H12 |
183.4 |
180.2 |
| C14 |
C15 |
C16 |
C7 |
0.7 |
0.6 |
| C15 |
C16 |
C7 |
H16 |
180.0 |
179.7 |
| C7 |
C16 |
C15 |
H15 |
180.7 |
180.4 |
| C13 |
C12 |
C7 |
C16 |
3.4 |
0.2 |
| C7 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
C15 |
5.0 |
360.0 |
| C12 |
C13 |
C14 |
O33 |
179.0 |
180.0 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
H12 |
174.4 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
| C15 |
C14 |
C13 |
O33 |
186.1 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
357.2 |
359.7 |
| C13 |
C14 |
C15 |
H15 |
177.2 |
179.9 |
| C13 |
C14 |
O33 |
C34 |
9.2 |
180.0 |
| C7 |
C16 |
C15 |
C14 |
0.7 |
0.6 |
| C13 |
C14 |
C15 |
O33 |
174.6 |
180.0 |
| C15 |
C14 |
C13 |
H13 |
185.0 |
180.0 |
| C15 |
C14 |
O33 |
C34 |
183.4 |
0.0 |
| C14 |
C15 |
C16 |
H16 |
180.7 |
180.3 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.8 |
| C13 |
C14 |
O33 |
C15 |
185.8 |
180.0 |
| O33 |
C14 |
C13 |
H13 |
358.9 |
0.0 |
| O33 |
C14 |
C15 |
C16 |
182.6 |
179.7 |
| O33 |
C14 |
C15 |
H15 |
2.6 |
359.9 |
| C14 |
O33 |
C34 |
H341 |
180.0 |
299.9 |
| C14 |
O33 |
C34 |
H342 |
300.0 |
60.0 |
| C14 |
O33 |
C34 |
H343 |
60.0 |
180.0 |
| C7 |
C16 |
C15 |
H16 |
180.0 |
180.3 |
| C16 |
C15 |
C14 |
O33 |
182.6 |
179.7 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.2 |
| C22 |
C21 |
C6 |
C25 |
7.8 |
0.2 |
| C6 |
C21 |
C22 |
O30 |
174.9 |
180.0 |
| C22 |
C21 |
O30 |
H30 |
355.2 |
270.0 |
| C21 |
C22 |
C23 |
C24 |
7.3 |
0.0 |
| C21 |
C22 |
C23 |
O29 |
175.3 |
180.0 |
| C23 |
C22 |
C21 |
H22 |
180.0 |
180.0 |
| O30 |
C21 |
C6 |
C25 |
182.5 |
180.2 |
| C6 |
C21 |
O30 |
C22 |
184.8 |
180.0 |
| O30 |
C21 |
C22 |
C23 |
175.4 |
180.1 |
| O30 |
C21 |
C22 |
H22 |
355.4 |
0.1 |
| C23 |
C22 |
C21 |
O30 |
175.4 |
180.1 |
| C21 |
C22 |
C23 |
H22 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
O29 |
192.0 |
180.0 |
| C22 |
C23 |
C24 |
C25 |
356.3 |
359.6 |
| C22 |
C23 |
C24 |
CL |
180.2 |
180.0 |
| C22 |
C23 |
O29 |
H29 |
180.0 |
90.0 |
| C6 |
C25 |
C24 |
C23 |
1.1 |
0.6 |
| C22 |
C23 |
C24 |
O29 |
167.8 |
180.0 |
| C24 |
C23 |
C22 |
H22 |
187.3 |
180.0 |
| C24 |
C23 |
O29 |
H29 |
347.9 |
269.9 |
| C25 |
C24 |
C23 |
CL |
176.1 |
179.6 |
| C23 |
C24 |
C25 |
H25 |
181.1 |
180.3 |
| C22 |
C23 |
O29 |
C24 |
192.1 |
180.0 |
| O29 |
C23 |
C22 |
H22 |
355.3 |
360.0 |
| O29 |
C23 |
C24 |
C25 |
188.5 |
179.7 |
| O29 |
C23 |
C24 |
CL |
12.4 |
0.0 |
| C6 |
C25 |
C24 |
H25 |
180.0 |
180.4 |
| C25 |
C24 |
C23 |
O29 |
188.5 |
179.7 |
| C23 |
C24 |
C25 |
CL |
183.9 |
180.4 |
| CL |
C24 |
C23 |
O29 |
12.4 |
0.0 |
| C23 |
C24 |
CL |
C25 |
176.6 |
179.6 |
| CL |
C24 |
C25 |
H25 |
357.3 |
359.9 |
| H341 |
C34 |
O33 |
H342 |
240.0 |
239.9 |
| H341 |
C34 |
O33 |
H343 |
120.0 |
119.9 |
| H342 |
C34 |
O33 |
H343 |
240.0 |
240.0 |
| C6 |
C25 |
H25 |
C24 |
180.0 |
179.6 |
| H25 |
C25 |
C24 |
CL |
357.3 |
359.9 |
| H12 |
C12 |
C7 |
C16 |
183.4 |
180.2 |
| C7 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
C14 |
174.4 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
354.4 |
360.0 |
| C7 |
C16 |
H16 |
C15 |
180.0 |
179.7 |
| H16 |
C16 |
C15 |
H15 |
0.7 |
0.0 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C13 |
C12 |
H12 |
354.4 |
360.0 |
| H13 |
C13 |
C14 |
C15 |
185.0 |
180.0 |
| H13 |
C13 |
C14 |
O33 |
358.9 |
0.0 |
| H15 |
C15 |
C14 |
O33 |
2.6 |
359.9 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.8 |
| H15 |
C15 |
C16 |
H16 |
0.7 |
0.0 |
| H22 |
C22 |
C21 |
O30 |
355.4 |
0.1 |
| C21 |
C22 |
H22 |
C23 |
180.0 |
180.0 |
| H22 |
C22 |
C23 |
C24 |
187.3 |
180.0 |
| H22 |
C22 |
C23 |
O29 |
355.3 |
360.0 |
| O33 |
C34 |
H341 |
H342 |
120.0 |
120.1 |
| O33 |
C34 |
H341 |
H343 |
240.0 |
240.1 |
| H342 |
C34 |
H341 |
H343 |
120.0 |
119.9 |
| O33 |
C34 |
H342 |
H341 |
240.0 |
239.9 |
| O33 |
C34 |
H342 |
H343 |
120.0 |
120.0 |
| H341 |
C34 |
H342 |
H343 |
240.0 |
240.1 |
| O33 |
C34 |
H343 |
H341 |
120.0 |
120.0 |
| O33 |
C34 |
H343 |
H342 |
240.0 |
240.0 |
| H341 |
C34 |
H343 |
H342 |
120.0 |
120.0 |