PDB Chemical Component YEX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YEX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.415	1.403
C1	C5	1.365	1.352
C7	C8	1.379	1.365
C7	C6	1.380	1.399
C8	C9	1.389	1.400
C2	C3	1.377	1.363
C19	C6	1.382	1.395
C19	C18	1.388	1.385
C5	N4	1.363	1.363
C6	C3	1.466	1.477
C9	C18	1.390	1.406
C9	C10	1.400	1.467
C18	N17	1.345	1.392
C3	N4	1.371	1.372
C11	C10	1.375	1.350
C11	C12	1.382	1.464
C10	C20	1.494	1.507
C12	N13	1.348	1.312
C12	N17	1.343	1.383
C15	N14	1.358	1.347
C15	N17	1.408	1.350
C15	O16	1.223	1.219
N13	N14	1.434	1.401
C1	H1	1.080	1.080
C2	H2	1.080	1.080
C5	H5	1.080	1.080
C7	H7	1.080	1.080
C8	H8	1.080	1.079
C19	H19	1.080	1.080
N4	H4	0.999	0.970
C11	H11	1.081	1.080
C20	H201	1.099	1.090
C20	H202	1.100	1.090
C20	H203	1.100	1.090
N14	H14	1.000	0.970

Bond Angles for YEX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	107.5	107.7
C1	C2	C3	108.1	107.3
C2	C1	H1	126.3	126.2
C1	C2	H2	125.9	126.4
C1	C5	N4	107.3	108.5
C5	C1	H1	126.2	126.1
C1	C5	H5	126.4	125.7
C8	C7	C6	121.2	120.4
C7	C8	C9	121.4	120.0
C8	C7	H7	119.4	119.8
C7	C8	H8	119.3	120.0
C7	C6	C19	117.6	120.2
C7	C6	C3	121.1	119.9
C6	C7	H7	119.4	119.9
C8	C9	C18	117.5	120.0
C8	C9	C10	120.9	120.3
C9	C8	H8	119.3	120.0
C2	C3	C6	129.6	126.1
C2	C3	N4	106.1	107.9
C3	C2	H2	126.0	126.3
C6	C19	C18	121.8	119.7
C19	C6	C3	121.3	119.9
C6	C19	H19	119.1	120.1
C19	C18	C9	120.4	119.7
C19	C18	N17	121.4	120.1
C18	C19	H19	119.1	120.2
C5	N4	C3	111.0	108.6
N4	C5	H5	126.4	125.8
C5	N4	H4	124.5	125.7
C6	C3	N4	124.3	126.0
C18	C9	C10	121.6	119.7
C9	C18	N17	118.2	120.2
C9	C10	C11	118.7	119.4
C9	C10	C20	123.7	120.3
C18	N17	C12	120.5	120.5
C18	N17	C15	130.6	131.3
C3	N4	H4	124.5	125.7
C10	C11	C12	117.4	119.9
C11	C10	C20	117.6	120.3
C10	C11	H11	121.3	120.1
C11	C12	N13	124.8	131.4
C11	C12	N17	123.6	120.3
C12	C11	H11	121.3	120.1
C10	C20	H201	109.5	109.5
C10	C20	H202	109.4	109.5
C10	C20	H203	109.5	109.5
N13	C12	N17	111.6	108.3
C12	N13	N14	103.9	108.0
C12	N17	C15	108.9	108.2
N14	C15	N17	104.8	107.9
N14	C15	O16	128.6	126.1
C15	N14	N13	110.7	107.6
C15	N14	H14	124.6	126.3
N17	C15	O16	126.6	126.1
N13	N14	H14	124.6	126.2
H201	C20	H202	109.5	109.5
H201	C20	H203	109.4	109.5
H202	C20	H203	109.5	109.4

Torsion Angles for YEX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C5	N4	359.9	360.0
C5	C1	C2	H1	180.0	180.3
C2	C1	C5	H5	179.9	180.0
C1	C2	C3	C6	177.6	180.0
C1	C2	C3	N4	359.8	-0.0
C3	C2	C1	H2	180.0	180.0
C5	C1	C2	C3	0.2	-0.0
C2	C1	C5	H1	180.0	179.7
C5	C1	C2	H2	180.2	180.0
C1	C5	N4	C3	360.0	-0.0
N4	C5	C1	H5	180.0	180.0
C1	C5	N4	H4	179.9	179.9
C8	C7	C6	C19	359.3	359.9
C8	C7	C6	C3	180.7	180.0
C6	C7	C8	H7	180.0	180.4
C7	C8	C9	C18	360.0	359.9
C7	C8	C9	C10	180.0	180.0
C9	C8	C7	H8	180.0	180.1
C6	C7	C8	C9	0.7	0.1
C8	C7	C6	H7	180.0	179.6
C6	C7	C8	H8	180.7	180.0
C2	C3	C6	C7	8.3	360.0
C7	C6	C19	C18	0.2	0.1
C19	C6	C7	C3	178.5	180.0
C7	C6	C19	H19	180.2	180.0
C7	C6	C3	N4	185.8	180.0
C9	C8	C7	C6	0.7	0.1
C9	C8	C7	H7	180.7	179.7
C7	C8	C9	H8	180.0	179.9
C19	C18	C9	C8	359.5	0.1
C18	C9	C8	C10	179.9	180.0
C8	C9	C18	N17	180.8	180.0
C8	C9	C10	C11	178.6	180.0
C8	C9	C10	C20	357.8	360.0
C3	C2	C1	C5	0.2	360.0
C3	C2	C1	H1	180.2	179.7
C1	C2	C3	H2	180.0	180.0
C7	C6	C3	C2	8.3	360.0
C19	C6	C3	C2	189.8	180.0
C5	N4	C3	C2	0.2	360.0
C6	C3	C2	N4	177.8	180.0
C2	C3	N4	H4	180.2	180.1
C7	C6	C19	C3	181.5	180.0
C19	C6	C7	H7	179.2	180.3
C2	C3	C6	C19	189.8	180.0
C6	C19	C18	C9	0.4	359.9
C6	C19	C18	N17	179.1	180.0
C18	C19	C6	H19	180.0	180.1
C19	C6	C3	N4	7.3	-0.0
C8	C9	C18	C19	359.5	0.1
C18	C19	C6	C3	178.8	180.0
C6	C19	C18	H19	180.0	179.9
C19	C18	C9	C10	179.5	180.0
C9	C18	C19	N17	181.3	179.9
C19	C18	N17	C12	182.7	180.0
C19	C18	N17	C15	359.2	0.0
N4	C5	C1	H1	179.9	180.3
C1	C5	N4	H5	180.0	180.0
C2	C3	N4	C5	0.2	-0.0
C6	C3	N4	C5	182.2	180.0
C3	N4	C5	H4	180.0	180.1
C7	C6	C3	C19	178.5	180.0
C3	C6	C7	H7	0.7	0.4
C2	C3	C6	N4	182.6	180.0
C6	C3	C2	H2	357.5	-0.0
C3	C6	C19	C18	178.8	180.0
C3	C6	C19	H19	358.7	359.9
C5	N4	C3	C6	182.2	180.0
C6	C3	N4	H4	2.2	0.1
C8	C9	C18	C10	180.1	180.0
C18	C9	C8	H8	180.0	180.0
C19	C18	C9	N17	178.7	180.1
C9	C18	C19	H19	180.4	180.0
C18	C9	C10	C11	358.7	360.0
C18	C9	C10	C20	177.9	180.0
C9	C18	N17	C12	1.4	0.0
C9	C18	N17	C15	178.0	180.1
C8	C9	C10	C18	179.9	180.0
C10	C9	C8	H8	0.0	0.1
C10	C9	C18	N17	0.7	360.0
C9	C10	C11	C12	359.8	0.0
C11	C10	C9	C20	180.8	180.0
C9	C10	C11	H11	179.8	180.0
C9	C10	C20	H201	180.0	90.0
C9	C10	C20	H202	300.0	210.0
C9	C10	C20	H203	60.0	330.0
C19	C18	N17	C9	181.3	179.9
N17	C18	C19	H19	359.1	0.1
N17	C18	C9	C10	0.7	360.0
C11	C12	N17	C18	356.9	-0.0
N13	C12	N17	C18	177.2	180.0
C12	N17	C18	C15	183.5	179.9
N14	C15	N17	C18	184.2	180.0
C18	N17	C15	O16	3.3	0.0
C2	C3	N4	C6	177.9	180.0
N4	C3	C2	H2	179.7	180.0
C3	N4	C5	H5	180.0	180.0
C5	N4	C3	H4	180.0	179.9
C9	C10	C11	C20	179.2	180.0
C10	C11	C12	N13	182.1	180.0
C10	C11	C12	N17	2.4	360.0
C12	C11	C10	H11	180.0	180.0
C11	C10	C20	H201	359.2	270.0
C11	C10	C20	H202	119.2	30.0
C11	C10	C20	H203	239.2	150.0
C18	N17	C12	C11	356.9	360.0
C12	C11	C10	C20	180.5	180.0
C10	C11	C12	H11	180.0	180.0
N13	C12	C11	N17	179.7	180.1
C11	C12	N13	N14	179.4	180.1
C11	C12	N17	C15	179.7	180.0
C9	C10	C20	C11	180.8	180.0
C20	C10	C11	C12	180.5	180.0
C20	C10	C11	H11	0.5	360.0
H201	C20	C10	H202	240.0	240.0
H201	C20	C10	H203	119.9	120.0
H202	C20	C10	H203	240.0	240.0
C18	N17	C12	N13	177.2	180.0
C11	C12	N13	N17	180.3	179.9
N13	C12	C11	H11	2.1	0.1
N13	C12	N17	C15	360.0	359.9
C15	N14	N13	C12	1.5	359.9
C12	N13	N14	H14	181.6	179.9
C18	N17	C12	C15	177.2	180.0
C11	C12	N17	N13	179.7	180.0
N17	C12	C11	H11	182.4	180.0
N17	C12	N13	N14	359.1	0.1
N14	C15	N17	C12	1.0	0.0
C12	N17	C15	O16	180.2	180.1
C18	N17	C15	N14	184.2	180.0
C12	N13	N14	C15	1.5	359.9
C12	N17	C15	N14	1.0	0.0
N17	C15	N14	O16	179.2	180.1
N13	N14	C15	H14	180.0	180.0
C18	N17	C15	C12	183.2	179.9
N14	C15	N17	O16	180.8	179.9
N17	C15	N14	N13	358.5	0.0
N17	C15	N14	H14	178.4	180.0
N14	C15	O16	N17	179.0	180.1
O16	C15	N14	N13	179.3	180.0
O16	C15	N14	H14	359.3	360.0
N14	N13	C12	N17	359.1	0.1
N13	N14	C15	N17	358.5	0.0
N13	N14	C15	O16	179.3	180.0
C15	N14	N13	H14	180.0	180.0
C2	C1	H1	C5	180.0	180.3
H1	C1	C2	C3	180.2	179.7
H1	C1	C2	H2	0.3	359.7
H1	C1	C5	N4	179.9	180.3
H1	C1	C5	H5	359.9	0.3
H2	C2	C1	C5	180.2	180.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C1	H1	0.3	359.7
H2	C2	C3	C6	357.5	-0.0
H2	C2	C3	N4	179.7	180.0
C1	C5	H5	N4	180.0	180.0
H5	C5	C1	H1	359.9	0.3
H5	C5	N4	C3	180.0	180.0
H5	C5	N4	H4	360.0	359.9
C8	C7	H7	C6	180.0	180.4
H7	C7	C8	C9	180.7	179.7
H7	C7	C8	H8	0.7	359.6
H7	C7	C6	C19	179.2	180.3
H7	C7	C6	C3	0.7	0.4
H8	C8	C7	C6	180.7	180.0
C7	C8	H8	C9	180.0	180.1
H8	C8	C7	H7	0.7	359.6
H8	C8	C9	C18	180.0	180.0
H8	C8	C9	C10	0.0	0.1
C6	C19	H19	C18	180.0	180.1
H19	C19	C6	C3	358.7	359.9
H19	C19	C18	C9	180.4	180.0
H19	C19	C18	N17	359.1	0.1
C5	N4	H4	C3	180.0	180.1
H4	N4	C5	H5	360.0	359.9
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	C20	0.5	360.0
H11	C11	C12	N13	2.1	0.1
H11	C11	C12	N17	182.4	180.0
C10	C20	H201	H202	120.0	120.0
C10	C20	H201	H203	240.0	240.0
H202	C20	H201	H203	120.0	120.0
C10	C20	H202	H201	240.0	240.0
C10	C20	H202	H203	120.0	120.0
H201	C20	H202	H203	240.0	240.0
C10	C20	H203	H201	120.0	120.0
C10	C20	H203	H202	240.0	240.0
H201	C20	H203	H202	120.0	120.0
H14	N14	C15	N17	178.4	180.0
H14	N14	C15	O16	359.3	360.0
C15	N14	H14	N13	180.0	180.0