PDB Chemical Component YES
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for YES
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.393 |
1.429 |
| C1 |
H1 |
1.100 |
1.089 |
| C2 |
C1 |
1.447 |
1.529 |
| C2 |
C4 |
1.547 |
1.530 |
| C2 |
C5 |
1.611 |
1.530 |
| C3 |
C2 |
1.551 |
1.530 |
| C3 |
H3 |
1.100 |
1.090 |
| O3 |
C3 |
1.485 |
1.429 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| O4 |
C4 |
1.549 |
1.430 |
| O4 |
HO4 |
0.950 |
0.966 |
| C5 |
C6 |
1.594 |
1.530 |
| C5 |
H5 |
1.100 |
1.089 |
| C6 |
C7 |
1.493 |
1.531 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| O7 |
C7 |
1.425 |
1.428 |
| O7 |
HO7 |
0.950 |
0.967 |
| C8 |
C5 |
1.573 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C9 |
C8 |
1.473 |
1.530 |
| C9 |
H9 |
1.100 |
1.090 |
| O9 |
C9 |
1.400 |
1.430 |
| O1 |
H15 |
0.950 |
0.967 |
| C1 |
H16 |
1.100 |
1.090 |
| C3 |
H17 |
1.100 |
1.090 |
| O3 |
H18 |
0.950 |
0.967 |
| C9 |
H19 |
1.100 |
1.090 |
| O9 |
H20 |
0.950 |
0.967 |
Bond Angles for YES
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
O1 |
H15 |
109.5 |
113.9 |
| C2 |
C1 |
H1 |
105.2 |
109.5 |
| H1 |
C1 |
H16 |
120.7 |
109.5 |
| C2 |
C1 |
H16 |
102.1 |
109.5 |
| C4 |
C2 |
C5 |
107.2 |
109.5 |
| C3 |
C2 |
C4 |
116.0 |
109.5 |
| C2 |
C4 |
H4 |
108.7 |
109.5 |
| C2 |
C4 |
H4A |
108.2 |
109.4 |
| C3 |
C2 |
C5 |
112.8 |
109.4 |
| C2 |
C5 |
C6 |
116.8 |
109.5 |
| C2 |
C5 |
H5 |
98.1 |
109.5 |
| O3 |
C3 |
H3 |
107.6 |
109.5 |
| H3 |
C3 |
H17 |
114.2 |
109.4 |
| O3 |
C3 |
H17 |
106.2 |
109.4 |
| H4 |
C4 |
H4A |
111.2 |
109.5 |
| O4 |
C4 |
H4 |
108.8 |
109.5 |
| O4 |
C4 |
H4A |
108.3 |
109.5 |
| C6 |
C5 |
H5 |
109.2 |
109.5 |
| C5 |
C6 |
C7 |
113.5 |
109.5 |
| C5 |
C6 |
H6 |
108.1 |
109.5 |
| C5 |
C6 |
H6A |
107.2 |
109.5 |
| C8 |
C5 |
H5 |
110.5 |
109.5 |
| C7 |
C6 |
H6 |
108.1 |
109.4 |
| C7 |
C6 |
H6A |
107.2 |
109.5 |
| C6 |
C7 |
H7 |
108.4 |
109.5 |
| C6 |
C7 |
H7A |
107.7 |
109.5 |
| H6 |
C6 |
H6A |
112.7 |
109.5 |
| H7 |
C7 |
H7A |
111.9 |
109.5 |
| O7 |
C7 |
H7 |
108.5 |
109.5 |
| O7 |
C7 |
H7A |
107.8 |
109.5 |
| H8 |
C8 |
H8A |
108.1 |
109.5 |
| C9 |
C8 |
H8 |
110.1 |
109.5 |
| C9 |
C8 |
H8A |
110.5 |
109.5 |
| O9 |
C9 |
H9 |
105.2 |
109.4 |
| H9 |
C9 |
H19 |
120.6 |
109.5 |
| O9 |
C9 |
H19 |
102.1 |
109.4 |
Torsion Angles for YES
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
O1 |
H15 |
182.7 |
300.0 |
| C2 |
C1 |
H1 |
H16 |
245.5 |
240.0 |
| C2 |
C1 |
O1 |
H15 |
62.6 |
180.0 |
| H1 |
C1 |
C2 |
H16 |
126.8 |
120.1 |
| C4 |
C2 |
C1 |
H1 |
51.1 |
60.0 |
| C4 |
C2 |
C1 |
H16 |
284.3 |
299.9 |
| C3 |
C2 |
C4 |
C5 |
127.1 |
240.1 |
| C4 |
C2 |
C5 |
C6 |
310.5 |
298.2 |
| C4 |
C2 |
C5 |
H5 |
194.1 |
178.2 |
| H4 |
C4 |
C2 |
H4A |
239.1 |
240.0 |
| O4 |
C4 |
C2 |
H4 |
240.0 |
240.0 |
| O4 |
C4 |
C2 |
H4A |
119.1 |
120.0 |
| C5 |
C2 |
C1 |
H1 |
296.7 |
180.0 |
| C5 |
C2 |
C1 |
H16 |
169.8 |
60.0 |
| C3 |
C2 |
C5 |
C4 |
231.0 |
120.0 |
| C5 |
C2 |
C4 |
H4 |
53.0 |
185.9 |
| C5 |
C2 |
C4 |
H4A |
173.9 |
305.9 |
| C6 |
C5 |
C2 |
H5 |
116.4 |
120.0 |
| C2 |
C5 |
C6 |
C7 |
213.3 |
207.9 |
| C2 |
C5 |
C6 |
H6 |
333.3 |
327.9 |
| C2 |
C5 |
C6 |
H6A |
95.1 |
87.9 |
| C8 |
C5 |
C2 |
H5 |
242.5 |
240.0 |
| C3 |
C2 |
C1 |
H1 |
177.1 |
300.0 |
| C3 |
C2 |
C1 |
H16 |
50.3 |
179.9 |
| C4 |
C2 |
C3 |
C5 |
235.7 |
120.0 |
| C3 |
C2 |
C4 |
H4 |
180.1 |
66.0 |
| C3 |
C2 |
C4 |
H4A |
301.0 |
186.0 |
| C3 |
C2 |
C5 |
C6 |
181.5 |
58.2 |
| C3 |
C2 |
C5 |
H5 |
65.1 |
298.1 |
| H3 |
C3 |
C2 |
C4 |
179.3 |
60.0 |
| H3 |
C3 |
C2 |
C5 |
303.5 |
300.1 |
| O3 |
C3 |
H3 |
H17 |
242.4 |
240.1 |
| O3 |
C3 |
C2 |
C4 |
59.2 |
300.0 |
| O3 |
C3 |
C2 |
C5 |
183.5 |
180.0 |
| H3 |
C3 |
O3 |
H17 |
122.7 |
119.9 |
| H4 |
C4 |
C2 |
C5 |
53.0 |
185.9 |
| C2 |
C4 |
H4 |
H4A |
119.0 |
120.0 |
| O4 |
C4 |
H4 |
H4A |
240.9 |
240.0 |
| H4A |
C4 |
C2 |
C5 |
173.9 |
305.9 |
| C2 |
C4 |
H4A |
H4 |
240.7 |
240.0 |
| O4 |
C4 |
H4A |
H4 |
119.4 |
120.0 |
| O4 |
C4 |
C2 |
C5 |
292.9 |
65.9 |
| C2 |
C4 |
O4 |
H4 |
120.0 |
120.0 |
| C2 |
C4 |
O4 |
H4A |
240.9 |
240.0 |
| H4 |
C4 |
O4 |
H4A |
120.9 |
120.0 |
| HO4 |
O4 |
C4 |
H4 |
9.6 |
60.0 |
| HO4 |
O4 |
C4 |
H4A |
248.7 |
300.0 |
| C2 |
C5 |
C6 |
H5 |
249.9 |
240.0 |
| C8 |
C5 |
C6 |
H5 |
119.2 |
120.0 |
| C7 |
C6 |
C5 |
H6 |
240.0 |
240.0 |
| C7 |
C6 |
C5 |
H6A |
118.2 |
120.0 |
| C5 |
C6 |
C7 |
H7 |
164.2 |
302.1 |
| C5 |
C6 |
C7 |
H7A |
285.5 |
62.1 |
| H6 |
C6 |
C5 |
H6A |
238.2 |
240.0 |
| C2 |
C5 |
H5 |
C6 |
122.1 |
120.0 |
| H5 |
C5 |
C6 |
C7 |
323.4 |
328.0 |
| H5 |
C5 |
C6 |
H6 |
83.3 |
87.9 |
| H5 |
C5 |
C6 |
H6A |
205.1 |
207.9 |
| C7 |
C6 |
C5 |
H5 |
323.4 |
328.0 |
| C5 |
C6 |
C7 |
H6 |
120.0 |
120.0 |
| C5 |
C6 |
C7 |
H6A |
241.8 |
240.0 |
| H6 |
C6 |
C7 |
H6A |
121.8 |
120.0 |
| H7 |
C7 |
C6 |
H7A |
238.7 |
240.0 |
| O7 |
C7 |
C6 |
H7 |
240.0 |
240.0 |
| O7 |
C7 |
C6 |
H7A |
118.7 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
83.3 |
87.9 |
| C5 |
C6 |
H6 |
C7 |
236.7 |
240.0 |
| C5 |
C6 |
H6 |
H6A |
118.4 |
120.0 |
| C7 |
C6 |
H6 |
H6A |
241.6 |
240.0 |
| H6 |
C6 |
C7 |
H7 |
44.2 |
182.1 |
| H6 |
C6 |
C7 |
H7A |
165.5 |
302.1 |
| H6A |
C6 |
C5 |
H5 |
205.1 |
207.9 |
| C5 |
C6 |
H6A |
C7 |
122.2 |
120.0 |
| C5 |
C6 |
H6A |
H6 |
241.1 |
240.0 |
| C7 |
C6 |
H6A |
H6 |
118.9 |
120.0 |
| H6A |
C6 |
C7 |
H7 |
282.4 |
62.1 |
| H6A |
C6 |
C7 |
H7A |
43.7 |
182.1 |
| H7 |
C7 |
C6 |
H6 |
44.2 |
182.1 |
| H7 |
C7 |
C6 |
H6A |
282.4 |
62.1 |
| C6 |
C7 |
H7 |
H7A |
118.7 |
120.0 |
| O7 |
C7 |
H7 |
H7A |
241.2 |
239.9 |
| H7A |
C7 |
C6 |
H6 |
165.5 |
302.1 |
| H7A |
C7 |
C6 |
H6A |
43.7 |
182.1 |
| C6 |
C7 |
H7A |
H7 |
240.9 |
240.0 |
| O7 |
C7 |
H7A |
H7 |
119.2 |
120.0 |
| O7 |
C7 |
C6 |
H6 |
284.2 |
62.1 |
| O7 |
C7 |
C6 |
H6A |
162.4 |
302.2 |
| C6 |
C7 |
O7 |
H7 |
120.0 |
120.0 |
| C6 |
C7 |
O7 |
H7A |
241.4 |
240.0 |
| H7 |
C7 |
O7 |
H7A |
121.4 |
120.0 |
| HO7 |
O7 |
C7 |
H7 |
195.3 |
60.1 |
| HO7 |
O7 |
C7 |
H7A |
73.9 |
300.0 |
| C2 |
C5 |
C8 |
H5 |
110.3 |
120.0 |
| C6 |
C5 |
C8 |
H5 |
241.6 |
240.0 |
| C8 |
C5 |
C6 |
H6 |
202.5 |
207.9 |
| C8 |
C5 |
C6 |
H6A |
324.3 |
328.0 |
| H8 |
C8 |
C5 |
H5 |
126.4 |
173.5 |
| C9 |
C8 |
H8 |
H8A |
239.3 |
240.0 |
| H8A |
C8 |
C5 |
H5 |
245.8 |
293.5 |
| C9 |
C8 |
H8A |
H8 |
120.5 |
120.0 |
| C9 |
C8 |
C5 |
H5 |
6.5 |
53.5 |
| H8 |
C8 |
C9 |
H8A |
119.3 |
120.0 |
| H9 |
C9 |
C8 |
H8 |
311.9 |
185.6 |
| H9 |
C9 |
C8 |
H8A |
192.6 |
65.6 |
| O9 |
C9 |
H9 |
H19 |
245.5 |
240.1 |
| O9 |
C9 |
C8 |
H8 |
191.8 |
65.6 |
| O9 |
C9 |
C8 |
H8A |
72.5 |
305.6 |
| H9 |
C9 |
O9 |
H19 |
126.8 |
119.9 |
| H16 |
C1 |
O1 |
H15 |
309.5 |
60.0 |
| C2 |
C1 |
H16 |
H1 |
116.1 |
120.1 |
| H17 |
C3 |
C2 |
C4 |
301.9 |
180.0 |
| H17 |
C3 |
C2 |
C5 |
66.2 |
60.0 |
| O3 |
C3 |
H17 |
H3 |
118.4 |
120.0 |
| H18 |
O3 |
C3 |
H3 |
259.3 |
60.0 |
| H18 |
O3 |
C3 |
H17 |
136.7 |
300.0 |
| H19 |
C9 |
C8 |
H8 |
78.6 |
305.6 |
| H19 |
C9 |
C8 |
H8A |
319.3 |
185.7 |
| O9 |
C9 |
H19 |
H9 |
116.1 |
119.9 |
| H20 |
O9 |
C9 |
H9 |
158.4 |
60.0 |
| H20 |
O9 |
C9 |
H19 |
31.7 |
300.0 |