PDB Chemical Component YCP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for YCP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	O	1.264	1.208
C	CA	1.601	1.508
C	OXT	1.402	1.343
N	CA	1.538	1.468
N	CE	1.480	1.469
CA	CB	1.548	1.531
CB	CG	1.584	1.531
CD	CE	1.569	1.530
CD	CG	1.558	1.531
N	H	1.000	1.009
CA	HA	1.100	1.090
CB	HB	1.100	1.090
CB	HBA	1.100	1.090
CD	HD	1.100	1.089
CD	HDA	1.100	1.091
CE	HE	1.100	1.090
CE	HEA	1.100	1.091
CG	HG	1.100	1.090
CG	HGA	1.100	1.090
OXT	HXT	0.950	0.966

Bond Angles for YCP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O	C	CA	120.5	120.0
O	C	OXT	121.9	120.0
CA	C	OXT	117.6	120.0
C	CA	N	115.4	109.5
C	CA	CB	109.1	109.5
C	CA	HA	104.9	109.4
C	OXT	HXT	109.5	117.0
CA	N	CE	118.2	111.2
N	CA	CB	107.0	109.6
CA	N	H	106.7	111.0
N	CA	HA	107.1	109.5
N	CE	CD	109.9	109.5
CE	N	H	106.7	111.0
N	CE	HE	109.3	109.4
N	CE	HEA	109.3	109.4
CA	CB	CG	111.4	109.2
CB	CA	HA	113.6	109.4
CA	CB	HB	108.8	109.4
CA	CB	HBA	108.8	109.5
CB	CG	CD	123.2	109.2
CG	CB	HB	108.9	109.6
CG	CB	HBA	108.8	109.5
CB	CG	HG	105.1	109.4
CB	CG	HGA	105.2	109.6
CE	CD	CG	116.0	109.3
CE	CD	HD	107.4	109.5
CE	CD	HDA	107.4	109.5
CD	CE	HE	109.3	109.5
CD	CE	HEA	109.3	109.5
CG	CD	HD	107.3	109.6
CG	CD	HDA	107.4	109.5
CD	CG	HG	105.1	109.5
CD	CG	HGA	105.1	109.5
HB	CB	HBA	110.1	109.5
HD	CD	HDA	111.5	109.6
HE	CE	HEA	109.6	109.5
HG	CG	HGA	113.4	109.6

Torsion Angles for YCP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CA	C	O	OXT	179.2	180.2
O	C	CA	N	238.3	340.0
O	C	CA	CB	358.6	100.1
O	C	CA	HA	120.7	220.0
O	C	OXT	HXT	360.0	359.9
O	C	CA	OXT	180.8	179.8
CA	C	OXT	HXT	180.7	179.7
C	CA	N	CE	49.8	181.8
N	CA	C	CB	239.6	239.9
C	CA	N	H	169.8	305.9
N	CA	C	HA	117.6	120.0
C	CA	CB	CG	273.7	180.8
CB	CA	C	HA	238.0	240.1
C	CA	CB	HB	33.7	300.7
C	CA	CB	HBA	153.7	60.8
O	C	OXT	CA	179.2	180.2
OXT	C	CA	N	57.5	160.2
OXT	C	CA	CB	177.9	280.3
OXT	C	CA	HA	299.9	40.2
N	CA	C	OXT	57.5	160.2
C	CA	N	CB	121.5	120.0
C	CA	N	HA	243.7	240.0
CA	N	CE	CD	51.5	298.3
CE	N	CA	H	240.0	235.9
CA	N	CE	HE	171.5	58.3
CA	N	CE	HEA	291.5	178.3
N	CA	CB	CG	39.1	300.8
CB	CA	N	HA	122.2	120.0
N	CA	CB	HB	159.1	60.8
N	CA	CB	HBA	279.0	180.9
CE	N	CA	CB	288.3	61.7
CA	N	CE	H	120.0	124.1
CE	N	CA	HA	166.2	301.7
N	CE	CD	CG	355.2	59.2
N	CE	CD	HD	115.2	179.2
N	CE	CD	HDA	235.2	299.3
CD	CE	N	HE	240.0	240.0
CD	CE	N	HEA	120.0	120.0
HE	CE	N	HEA	240.0	240.0
CB	CA	C	OXT	177.9	280.3
C	CA	CB	N	234.6	239.9
C	CA	CB	HA	116.6	119.9
CB	CA	N	CE	288.3	61.7
CB	CA	N	H	48.3	185.8
N	CA	CB	HA	242.0	240.0
CA	CB	CG	CD	0.2	57.6
CG	CB	CA	HB	240.0	240.1
CG	CB	CA	HBA	120.0	119.9
CA	CB	CG	HG	120.2	177.5
CA	CB	CG	HGA	240.2	297.7
HB	CB	CA	HBA	240.0	239.9
CG	CB	CA	HA	157.1	60.9
CA	CB	CG	HB	120.0	119.9
CA	CB	CG	HBA	240.0	240.1
CE	CD	CG	CB	340.5	302.3
CB	CG	CD	HD	220.5	182.4
CB	CG	CD	HDA	100.5	62.2
CD	CG	CB	HG	240.0	240.1
CD	CG	CB	HGA	120.0	119.9
HB	CB	CG	HBA	120.0	120.2
HG	CG	CB	HGA	240.0	239.8
CD	CE	N	H	291.5	174.1
N	CE	CD	HE	120.0	120.0
N	CE	CD	HEA	240.0	240.0
CB	CG	CD	CE	340.5	302.3
CG	CD	CE	HD	240.0	240.0
CG	CD	CE	HDA	120.0	119.9
CE	CD	CG	HG	220.5	182.5
CE	CD	CG	HGA	100.5	62.3
HD	CD	CE	HDA	240.0	239.9
HE	CE	CD	HEA	120.0	120.0
CD	CG	CB	HB	240.2	297.8
CD	CG	CB	HBA	120.2	177.6
CB	CG	CD	HG	120.0	119.8
CB	CG	CD	HGA	240.0	240.0
CE	CD	CG	HD	120.0	120.0
CE	CD	CG	HDA	240.0	240.1
CG	CD	CE	HE	235.2	299.2
CG	CD	CE	HEA	115.2	179.1
HD	CD	CG	HDA	120.0	120.2
HG	CG	CD	HGA	120.0	120.2
CA	N	H	CE	232.8	235.8
H	N	CA	CB	48.3	185.8
H	N	CA	HA	286.2	65.8
H	N	CE	CD	291.5	174.1
H	N	CE	HE	51.5	294.2
H	N	CE	HEA	171.5	54.2
HA	CA	C	OXT	299.9	40.2
C	CA	HA	N	123.1	120.0
C	CA	HA	CB	241.0	240.1
HA	CA	N	CE	166.2	301.7
N	CA	HA	CB	117.9	120.1
HA	CA	N	H	286.2	65.8
HA	CA	CB	CG	157.1	60.9
HA	CA	CB	HB	277.1	180.8
HA	CA	CB	HBA	37.0	300.9
CA	CB	HB	CG	238.4	240.2
HB	CB	CA	HA	277.1	180.8
CA	CB	HB	HBA	119.2	120.1
HB	CB	CG	CD	240.2	297.8
CG	CB	HB	HBA	240.8	239.8
HB	CB	CG	HG	0.2	57.7
HB	CB	CG	HGA	120.2	177.8
CA	CB	HBA	CG	121.6	119.8
HBA	CB	CA	HA	37.0	300.9
CA	CB	HBA	HB	240.8	240.0
HBA	CB	CG	CD	120.2	177.6
CG	CB	HBA	HB	119.2	120.2
HBA	CB	CG	HG	240.2	297.5
HBA	CB	CG	HGA	0.2	57.7
CE	CD	HD	CG	234.7	240.2
CE	CD	HD	HDA	117.3	120.1
HD	CD	CE	HE	355.2	59.2
HD	CD	CE	HEA	235.2	299.1
CG	CD	HD	HDA	242.7	239.9
HD	CD	CG	HG	100.5	62.5
HD	CD	CG	HGA	340.5	302.3
CE	CD	HDA	CG	125.4	119.8
CE	CD	HDA	HD	242.6	239.9
HDA	CD	CE	HE	115.2	179.3
HDA	CD	CE	HEA	355.2	59.2
CG	CD	HDA	HD	117.3	120.2
HDA	CD	CG	HG	340.5	302.4
HDA	CD	CG	HGA	220.5	182.2
N	CE	HE	CD	239.7	239.9
HE	CE	N	H	51.5	294.2
N	CE	HE	HEA	119.8	119.9
HE	CE	CD	CG	235.2	299.2
HE	CE	CD	HD	355.2	59.2
HE	CE	CD	HDA	115.2	179.3
CD	CE	HE	HEA	240.2	240.0
N	CE	HEA	CD	120.3	120.0
HEA	CE	N	H	171.5	54.2
N	CE	HEA	HE	240.2	240.1
HEA	CE	CD	CG	115.2	179.1
HEA	CE	CD	HD	235.2	299.1
HEA	CE	CD	HDA	355.2	59.2
CD	CE	HEA	HE	119.8	120.0
CB	CG	HG	CD	228.7	240.3
HG	CG	CB	HB	0.2	57.7
HG	CG	CB	HBA	240.2	297.5
CB	CG	HG	HGA	114.4	120.2
HG	CG	CD	HD	100.5	62.5
HG	CG	CD	HDA	340.5	302.4
CD	CG	HG	HGA	245.7	239.8
CB	CG	HGA	CD	131.3	119.7
HGA	CG	CB	HB	120.2	177.8
HGA	CG	CB	HBA	0.2	57.7
CB	CG	HGA	HG	245.7	239.9
HGA	CG	CD	HD	340.5	302.3
HGA	CG	CD	HDA	220.5	182.2
CD	CG	HGA	HG	114.3	120.2