PDB Chemical Component Y94
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Y94
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C22 |
C18 |
1.397 |
1.361 |
C22 |
C20 |
1.402 |
1.393 |
C18 |
C11 |
1.391 |
1.406 |
C20 |
C14 |
1.394 |
1.362 |
C11 |
C12 |
1.393 |
1.406 |
C11 |
C8 |
1.474 |
1.417 |
C14 |
C8 |
1.372 |
1.405 |
C12 |
C9 |
1.395 |
1.361 |
C27 |
N25 |
1.467 |
1.465 |
C27 |
C28 |
1.532 |
1.507 |
N25 |
C24 |
1.367 |
1.348 |
C8 |
C5 |
1.470 |
1.406 |
O7 |
C1 |
1.219 |
1.215 |
C24 |
O26 |
1.209 |
1.216 |
C24 |
N01 |
1.308 |
1.348 |
N01 |
C19 |
1.345 |
1.400 |
C9 |
C4 |
1.389 |
1.392 |
C28 |
C29 |
1.338 |
1.311 |
C13 |
C19 |
1.410 |
1.386 |
C13 |
C3 |
1.359 |
1.395 |
C19 |
C21 |
1.397 |
1.389 |
C5 |
C4 |
1.391 |
1.361 |
C5 |
C6 |
1.491 |
1.507 |
C1 |
C3 |
1.480 |
1.479 |
C1 |
N2 |
1.350 |
1.347 |
C3 |
C10 |
1.471 |
1.396 |
C21 |
C17 |
1.415 |
1.382 |
C10 |
C17 |
1.402 |
1.381 |
C10 |
C16 |
1.506 |
1.507 |
C6 |
N2 |
1.415 |
1.465 |
C6 |
C01 |
1.546 |
1.529 |
N25 |
H1 |
1.000 |
0.969 |
C27 |
H2 |
1.100 |
1.091 |
C27 |
H3 |
1.100 |
1.090 |
C28 |
H4 |
1.080 |
1.080 |
C29 |
H5 |
1.080 |
1.080 |
C29 |
H6 |
1.080 |
1.080 |
N01 |
H7 |
1.000 |
0.970 |
C13 |
H8 |
1.080 |
1.080 |
C21 |
H9 |
1.080 |
1.080 |
C17 |
H10 |
1.080 |
1.080 |
C16 |
H11 |
1.100 |
1.090 |
C16 |
H12 |
1.099 |
1.090 |
C16 |
H13 |
1.100 |
1.091 |
N2 |
H14 |
1.000 |
0.970 |
C6 |
H15 |
1.100 |
1.090 |
C01 |
H16 |
1.100 |
1.090 |
C01 |
H17 |
1.100 |
1.090 |
C01 |
H18 |
1.101 |
1.091 |
C14 |
H19 |
1.079 |
1.080 |
C20 |
H20 |
1.080 |
1.080 |
C22 |
H21 |
1.080 |
1.081 |
C18 |
H22 |
1.080 |
1.080 |
C12 |
H23 |
1.080 |
1.080 |
C9 |
H24 |
1.080 |
1.080 |
C4 |
H25 |
1.080 |
1.080 |
Bond Angles for Y94
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C22 |
C18 |
C11 |
119.6 |
119.6 |
C18 |
C22 |
H21 |
120.6 |
119.5 |
C22 |
C18 |
H22 |
120.2 |
120.2 |
C22 |
C20 |
H20 |
118.3 |
119.5 |
C18 |
C11 |
C12 |
120.1 |
121.3 |
C11 |
C18 |
H22 |
120.2 |
120.2 |
C20 |
C14 |
H19 |
120.5 |
120.2 |
C11 |
C12 |
C9 |
121.7 |
119.6 |
C11 |
C12 |
H23 |
119.2 |
120.2 |
C12 |
C9 |
C4 |
119.8 |
121.0 |
C9 |
C12 |
H23 |
119.1 |
120.2 |
C12 |
C9 |
H24 |
120.1 |
119.5 |
C27 |
N25 |
H1 |
116.9 |
120.0 |
C27 |
C28 |
C29 |
122.4 |
120.0 |
C28 |
C27 |
H2 |
108.9 |
109.5 |
C28 |
C27 |
H3 |
108.9 |
109.5 |
C27 |
C28 |
H4 |
118.8 |
120.0 |
N25 |
C24 |
N01 |
112.9 |
120.0 |
C8 |
C5 |
C4 |
118.5 |
119.7 |
O7 |
C1 |
N2 |
125.7 |
120.0 |
C24 |
N01 |
C19 |
135.8 |
120.0 |
C24 |
N01 |
H7 |
112.1 |
120.0 |
N01 |
C19 |
C21 |
130.3 |
120.0 |
C19 |
N01 |
H7 |
112.1 |
120.0 |
C5 |
C4 |
C9 |
123.0 |
121.0 |
C4 |
C9 |
H24 |
120.1 |
119.5 |
C9 |
C4 |
H25 |
118.5 |
119.5 |
C29 |
C28 |
H4 |
118.8 |
120.0 |
C28 |
C29 |
H5 |
120.0 |
120.0 |
C28 |
C29 |
H6 |
120.0 |
120.0 |
C13 |
C19 |
C21 |
121.2 |
120.0 |
C13 |
C3 |
C10 |
119.8 |
119.8 |
C3 |
C13 |
H8 |
119.7 |
120.0 |
C19 |
C21 |
C17 |
119.3 |
120.2 |
C19 |
C21 |
H9 |
120.4 |
119.9 |
C5 |
C4 |
H25 |
118.5 |
119.5 |
C5 |
C6 |
H15 |
108.2 |
109.5 |
C1 |
N2 |
H14 |
119.0 |
120.0 |
C17 |
C21 |
H9 |
120.4 |
119.9 |
C21 |
C17 |
H10 |
119.8 |
119.9 |
C10 |
C17 |
H10 |
119.8 |
119.9 |
C10 |
C16 |
H11 |
109.5 |
109.5 |
C10 |
C16 |
H12 |
109.5 |
109.5 |
C10 |
C16 |
H13 |
109.4 |
109.5 |
C6 |
N2 |
H14 |
119.1 |
120.0 |
C01 |
C6 |
H15 |
107.5 |
109.5 |
C6 |
C01 |
H16 |
109.5 |
109.5 |
C6 |
C01 |
H17 |
109.5 |
109.5 |
C6 |
C01 |
H18 |
109.5 |
109.5 |
H2 |
C27 |
H3 |
109.5 |
109.5 |
H5 |
C29 |
H6 |
120.0 |
120.0 |
H11 |
C16 |
H12 |
109.4 |
109.5 |
H11 |
C16 |
H13 |
109.5 |
109.4 |
H12 |
C16 |
H13 |
109.5 |
109.5 |
H16 |
C01 |
H17 |
109.4 |
109.5 |
H16 |
C01 |
H18 |
109.5 |
109.4 |
H17 |
C01 |
H18 |
109.5 |
109.4 |
Torsion Angles for Y94
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C18 |
C22 |
C20 |
H20 |
180.0 |
180.1 |
C22 |
C18 |
C11 |
C12 |
179.7 |
180.0 |
C11 |
C18 |
C22 |
H22 |
180.0 |
179.9 |
C22 |
C20 |
C14 |
H19 |
180.3 |
180.0 |
C11 |
C18 |
C22 |
H21 |
180.4 |
180.0 |
C22 |
C18 |
C11 |
H22 |
180.0 |
180.1 |
C18 |
C11 |
C12 |
C9 |
179.4 |
180.0 |
C18 |
C11 |
C12 |
H23 |
359.4 |
360.0 |
C12 |
C11 |
C18 |
H22 |
359.8 |
360.0 |
C11 |
C12 |
C9 |
C4 |
358.4 |
360.0 |
C9 |
C12 |
C11 |
H23 |
180.0 |
180.0 |
C11 |
C12 |
C9 |
H24 |
178.4 |
180.0 |
C11 |
C8 |
C5 |
C4 |
358.1 |
0.0 |
C14 |
C8 |
C5 |
C4 |
179.2 |
180.0 |
C11 |
C12 |
C9 |
H23 |
180.0 |
180.0 |
C5 |
C4 |
C9 |
C12 |
1.3 |
0.0 |
C4 |
C9 |
C12 |
H24 |
180.0 |
180.0 |
C12 |
C9 |
C4 |
H25 |
181.3 |
180.3 |
C27 |
N25 |
C24 |
N01 |
193.5 |
180.3 |
C28 |
C27 |
N25 |
H1 |
269.3 |
0.0 |
C29 |
C28 |
C27 |
H4 |
180.0 |
180.1 |
C27 |
C28 |
C29 |
H5 |
180.0 |
180.0 |
C27 |
C28 |
C29 |
H6 |
0.0 |
359.9 |
H2 |
C27 |
C28 |
H3 |
119.4 |
120.0 |
N25 |
C24 |
N01 |
C19 |
180.3 |
174.7 |
N25 |
C24 |
N01 |
H7 |
0.3 |
354.8 |
C8 |
C5 |
C4 |
C9 |
0.5 |
360.0 |
C8 |
C5 |
C4 |
H25 |
180.5 |
179.7 |
C8 |
C5 |
C6 |
H15 |
2.0 |
327.2 |
O7 |
C1 |
N2 |
H14 |
179.8 |
180.0 |
C24 |
N01 |
C19 |
C21 |
349.0 |
215.3 |
C19 |
N01 |
C24 |
H7 |
180.0 |
179.9 |
C24 |
N01 |
C19 |
H7 |
180.0 |
180.1 |
C13 |
C19 |
N01 |
C21 |
178.0 |
180.3 |
N01 |
C19 |
C21 |
C17 |
178.0 |
180.0 |
N01 |
C19 |
C21 |
H9 |
358.0 |
0.0 |
C4 |
C9 |
C12 |
H23 |
178.4 |
180.0 |
C12 |
C9 |
C4 |
H24 |
180.0 |
180.0 |
C5 |
C4 |
C9 |
H25 |
180.0 |
179.7 |
C29 |
C28 |
C27 |
H2 |
345.6 |
5.1 |
C29 |
C28 |
C27 |
H3 |
226.2 |
245.1 |
C27 |
C28 |
C29 |
H4 |
180.0 |
179.9 |
H5 |
C29 |
C28 |
H6 |
180.0 |
180.1 |
N01 |
C19 |
C13 |
C21 |
181.8 |
179.7 |
C13 |
C19 |
N01 |
H7 |
346.9 |
215.5 |
C13 |
C19 |
C21 |
C17 |
0.3 |
359.8 |
C13 |
C19 |
C21 |
H9 |
180.2 |
179.7 |
C3 |
C13 |
C19 |
C21 |
359.4 |
0.2 |
C21 |
C19 |
N01 |
H7 |
168.9 |
35.2 |
C17 |
C21 |
C19 |
H9 |
180.0 |
180.0 |
C19 |
C21 |
C17 |
H10 |
179.0 |
180.0 |
C12 |
C9 |
C4 |
C5 |
1.3 |
0.0 |
C5 |
C4 |
C9 |
H24 |
181.3 |
180.0 |
C9 |
C4 |
C5 |
H25 |
180.0 |
180.3 |
C4 |
C5 |
C6 |
H15 |
184.8 |
146.9 |
C5 |
C6 |
N2 |
H14 |
263.6 |
339.0 |
C01 |
C6 |
C5 |
H15 |
118.3 |
120.0 |
C5 |
C6 |
C01 |
H16 |
180.0 |
59.9 |
C5 |
C6 |
C01 |
H17 |
300.0 |
180.0 |
C5 |
C6 |
C01 |
H18 |
60.0 |
300.0 |
C1 |
C3 |
C13 |
H8 |
358.8 |
0.0 |
C6 |
N2 |
C1 |
H14 |
180.0 |
180.0 |
C10 |
C3 |
C13 |
H8 |
181.6 |
180.0 |
C3 |
C10 |
C17 |
H10 |
181.9 |
180.3 |
C3 |
C10 |
C16 |
H11 |
89.2 |
277.2 |
C3 |
C10 |
C16 |
H12 |
209.2 |
37.2 |
C3 |
C10 |
C16 |
H13 |
329.2 |
157.2 |
C19 |
C21 |
C17 |
H9 |
180.0 |
180.0 |
C10 |
C17 |
C21 |
H10 |
180.0 |
180.0 |
C13 |
C3 |
C10 |
C17 |
357.8 |
359.7 |
C10 |
C17 |
C21 |
H9 |
179.0 |
180.0 |
C21 |
C17 |
C10 |
H10 |
180.0 |
180.0 |
C13 |
C3 |
C10 |
C16 |
179.5 |
180.0 |
C16 |
C10 |
C17 |
H10 |
0.1 |
0.0 |
H11 |
C16 |
C10 |
H12 |
240.0 |
240.0 |
H11 |
C16 |
C10 |
H13 |
120.0 |
120.0 |
H12 |
C16 |
C10 |
H13 |
240.0 |
240.0 |
C1 |
N2 |
C6 |
H14 |
180.0 |
180.0 |
C5 |
C6 |
C01 |
H15 |
241.2 |
240.0 |
C01 |
C6 |
N2 |
H14 |
27.3 |
99.0 |
H16 |
C01 |
C6 |
H17 |
240.0 |
239.9 |
H16 |
C01 |
C6 |
H18 |
120.0 |
119.9 |
H17 |
C01 |
C6 |
H18 |
240.0 |
240.0 |
H1 |
N25 |
C24 |
N01 |
13.5 |
0.2 |
H2 |
C27 |
N25 |
H1 |
29.7 |
120.0 |
H2 |
C27 |
C28 |
C29 |
345.6 |
5.1 |
C28 |
C27 |
H2 |
H3 |
241.0 |
240.0 |
H2 |
C27 |
C28 |
H4 |
165.6 |
185.0 |
H3 |
C27 |
N25 |
H1 |
149.0 |
240.0 |
H3 |
C27 |
C28 |
C29 |
226.2 |
245.1 |
C28 |
C27 |
H3 |
H2 |
119.0 |
120.0 |
H3 |
C27 |
C28 |
H4 |
46.2 |
65.0 |
C27 |
C28 |
H4 |
C29 |
180.0 |
180.1 |
H4 |
C28 |
C27 |
H2 |
165.6 |
185.0 |
H4 |
C28 |
C27 |
H3 |
46.2 |
65.0 |
H4 |
C28 |
C29 |
H5 |
0.0 |
0.1 |
H4 |
C28 |
C29 |
H6 |
180.0 |
180.0 |
H5 |
C29 |
C28 |
H4 |
0.0 |
0.1 |
C28 |
C29 |
H5 |
H6 |
180.0 |
179.9 |
H6 |
C29 |
C28 |
H4 |
180.0 |
180.0 |
C28 |
C29 |
H6 |
H5 |
180.0 |
180.1 |
C24 |
N01 |
H7 |
C19 |
180.0 |
179.9 |
H7 |
N01 |
C19 |
C21 |
168.9 |
35.2 |
H8 |
C13 |
C19 |
C21 |
179.4 |
180.2 |
H8 |
C13 |
C3 |
C10 |
181.6 |
180.0 |
C19 |
C21 |
H9 |
C17 |
180.0 |
180.0 |
H9 |
C21 |
C17 |
H10 |
359.0 |
0.0 |
H10 |
C17 |
C21 |
H9 |
359.0 |
0.0 |
C10 |
C16 |
H11 |
H12 |
120.0 |
120.0 |
C10 |
C16 |
H11 |
H13 |
240.0 |
240.0 |
H12 |
C16 |
H11 |
H13 |
120.0 |
120.0 |
C10 |
C16 |
H12 |
H11 |
240.0 |
240.0 |
C10 |
C16 |
H12 |
H13 |
120.0 |
120.0 |
H11 |
C16 |
H12 |
H13 |
240.0 |
240.0 |
C10 |
C16 |
H13 |
H11 |
120.0 |
120.0 |
C10 |
C16 |
H13 |
H12 |
240.0 |
240.0 |
H11 |
C16 |
H13 |
H12 |
120.0 |
120.0 |
H15 |
C6 |
N2 |
H14 |
145.7 |
219.0 |
H15 |
C6 |
C01 |
H16 |
298.8 |
180.0 |
H15 |
C6 |
C01 |
H17 |
58.7 |
300.0 |
H15 |
C6 |
C01 |
H18 |
178.8 |
60.1 |
H16 |
C01 |
C6 |
H15 |
298.8 |
180.0 |
C6 |
C01 |
H16 |
H17 |
120.0 |
120.1 |
C6 |
C01 |
H16 |
H18 |
240.0 |
240.0 |
H17 |
C01 |
H16 |
H18 |
120.0 |
119.9 |
H17 |
C01 |
C6 |
H15 |
58.7 |
300.0 |
C6 |
C01 |
H17 |
H16 |
240.0 |
239.9 |
C6 |
C01 |
H17 |
H18 |
120.0 |
120.0 |
H16 |
C01 |
H17 |
H18 |
240.0 |
240.1 |
H18 |
C01 |
C6 |
H15 |
178.8 |
60.1 |
C6 |
C01 |
H18 |
H16 |
120.0 |
120.0 |
C6 |
C01 |
H18 |
H17 |
240.0 |
239.9 |
H16 |
C01 |
H18 |
H17 |
119.9 |
120.0 |
H20 |
C20 |
C14 |
H19 |
0.3 |
359.9 |
H21 |
C22 |
C18 |
C11 |
180.4 |
180.0 |
H21 |
C22 |
C18 |
H22 |
0.3 |
0.1 |
H21 |
C22 |
C20 |
H20 |
0.1 |
0.0 |
C22 |
C18 |
H22 |
C11 |
180.0 |
179.9 |
H22 |
C18 |
C22 |
H21 |
0.3 |
0.1 |
H22 |
C18 |
C11 |
C12 |
359.8 |
360.0 |
C11 |
C12 |
H23 |
C9 |
180.0 |
180.0 |
H23 |
C12 |
C9 |
C4 |
178.4 |
180.0 |
H23 |
C12 |
C9 |
H24 |
358.4 |
0.0 |
C12 |
C9 |
H24 |
C4 |
180.0 |
180.0 |
H24 |
C9 |
C12 |
H23 |
358.4 |
0.0 |
H24 |
C9 |
C4 |
H25 |
1.3 |
0.3 |
C5 |
C4 |
H25 |
C9 |
180.0 |
180.3 |
H25 |
C4 |
C9 |
H24 |
1.3 |
0.3 |