PDB Chemical Component Y8L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Y8L

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C17	C18	1.540	1.532
C17	N16	1.476	1.471
C18	N19	1.471	1.469
N19	C20	1.456	1.469
C20	C21	1.529	1.532
C21	N16	1.474	1.471
N16	C12	1.412	1.399
C12	C13	1.397	1.460
C12	C11	1.392	1.341
C13	C14	1.402	1.348
C14	C9	1.387	1.411
C11	C10	1.400	1.513
C10	C9	1.397	1.514
C9	N7	1.346	1.312
N7	C4	1.346	1.362
C4	N5	1.350	1.328
C4	N3	1.347	1.330
N5	C6	1.349	1.333
N3	C2	1.324	1.324
C2	C1	1.384	1.382
C1	C6	1.395	1.402
C6	C15	1.405	1.476
C15	S23	1.721	1.773
C15	C26	1.405	1.343
S23	C24	1.693	1.722
C24	O28	1.229	1.218
C24	N25	1.335	1.341
N25	C29	1.491	1.465
N25	C26	1.340	1.354
C26	C27	1.531	1.507
C17	H171	1.099	1.090
C17	H172	1.100	1.089
C18	H181	1.099	1.090
C18	H182	1.100	1.090
N19	H19	1.000	1.009
C20	H201	1.100	1.090
C20	H202	1.100	1.090
C21	H211	1.100	1.091
C21	H212	1.100	1.090
C13	H13	1.080	1.080
C11	H11	1.080	1.081
C14	H14	1.080	1.081
C10	H101	1.100	1.089
C10	H102	1.100	1.090
C2	H2	1.080	1.080
C1	H1	1.080	1.080
C29	H291	1.100	1.090
C29	H292	1.100	1.090
C29	H293	1.100	1.090
C27	H271	1.100	1.091
C27	H272	1.100	1.090
C27	H273	1.100	1.090

Bond Angles for Y8L

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C18	C17	N16	115.5	108.5
C17	C18	N19	112.7	109.4
C18	C17	H171	107.5	109.6
C18	C17	H172	106.2	109.7
C17	C18	H181	108.4	109.5
C17	C18	H182	107.7	109.5
C17	N16	C21	121.2	118.2
C17	N16	C12	118.6	120.9
N16	C17	H171	107.5	109.6
N16	C17	H172	106.1	109.7
C18	N19	C20	108.4	111.3
N19	C18	H181	108.4	109.5
N19	C18	H182	107.7	109.5
C18	N19	H19	109.8	111.0
N19	C20	C21	108.0	109.3
C20	N19	H19	109.8	111.0
N19	C20	H201	110.0	109.4
N19	C20	H202	110.3	109.5
C20	C21	N16	110.6	108.6
C21	C20	H201	109.9	109.5
C21	C20	H202	110.3	109.5
C20	C21	H211	109.1	109.7
C20	C21	H212	108.9	109.6
C21	N16	C12	119.5	120.9
N16	C21	H211	109.1	109.6
N16	C21	H212	108.8	109.7
N16	C12	C13	121.0	119.3
N16	C12	C11	120.2	119.3
C13	C12	C11	118.8	121.4
C12	C13	C14	121.0	122.7
C12	C13	H13	119.5	118.6
C12	C11	C10	119.4	118.8
C12	C11	H11	120.3	120.6
C13	C14	C9	120.9	121.1
C14	C13	H13	119.5	118.7
C13	C14	H14	119.6	119.5
C14	C9	C10	117.5	118.4
C14	C9	N7	123.9	120.8
C9	C14	H14	119.5	119.5
C11	C10	C9	122.5	117.6
C10	C11	H11	120.3	120.6
C11	C10	H101	105.4	107.8
C11	C10	H102	102.3	107.8
C10	C9	N7	118.6	120.8
C9	C10	H101	105.3	107.8
C9	C10	H102	102.3	107.8
C9	N7	C4	127.6	120.0
N7	C4	N5	124.7	119.2
N7	C4	N3	116.4	119.1
N5	C4	N3	118.7	121.6
C4	N5	C6	122.0	120.5
C4	N3	C2	122.2	121.0
N5	C6	C1	118.3	119.0
N5	C6	C15	122.4	120.5
N3	C2	C1	119.7	119.4
N3	C2	H2	120.2	120.3
C2	C1	C6	118.9	118.6
C1	C2	H2	120.1	120.3
C2	C1	H1	120.6	120.8
C1	C6	C15	119.0	120.5
C6	C1	H1	120.5	120.7
C6	C15	S23	126.7	127.4
C6	C15	C26	126.8	127.5
S23	C15	C26	106.4	105.1
C15	S23	C24	93.9	94.8
C15	C26	N25	114.5	116.4
C15	C26	C27	124.2	121.8
S23	C24	O28	125.8	126.9
S23	C24	N25	109.7	106.1
O28	C24	N25	124.3	127.0
C24	N25	C29	121.8	121.2
C24	N25	C26	115.4	117.6
C29	N25	C26	122.8	121.2
N25	C29	H291	109.5	109.5
N25	C29	H292	109.4	109.5
N25	C29	H293	109.4	109.5
N25	C26	C27	121.3	121.8
C26	C27	H271	109.5	109.5
C26	C27	H272	109.5	109.5
C26	C27	H273	109.5	109.5
H171	C17	H172	114.3	109.8
H181	C18	H182	112.0	109.4
H201	C20	H202	108.3	109.5
H211	C21	H212	110.4	109.7
H101	C10	H102	120.3	107.6
H291	C29	H292	109.5	109.5
H291	C29	H293	109.5	109.5
H292	C29	H293	109.5	109.4
H271	C27	H272	109.5	109.4
H271	C27	H273	109.5	109.5
H272	C27	H273	109.5	109.5

Torsion Angles for Y8L

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	C17	N16	C21	26.5	51.2
C18	C17	N16	C12	196.8	231.1
N16	C17	C18	H171	240.0	240.3
N16	C17	C18	H172	117.3	119.7
C17	C18	N19	C20	310.9	63.1
N19	C18	C17	H181	240.0	240.0
N19	C18	C17	H182	118.6	120.0
C17	C18	N19	H19	70.8	187.3
H171	C17	C18	H172	237.3	239.4
H181	C18	C17	H182	238.6	240.0
N16	C17	C18	N19	359.6	306.2
C18	C17	N16	H171	120.0	119.7
C18	C17	N16	H172	242.7	240.3
N16	C17	C18	H181	119.6	66.2
N16	C17	C18	H182	241.0	186.2
C20	C21	N16	C17	358.2	308.8
C21	N16	C17	C12	189.7	180.0
C17	N16	C21	H211	238.2	189.1
C17	N16	C21	H212	117.8	68.5
C17	N16	C12	C13	179.9	173.6
C17	N16	C12	C11	359.1	353.3
H171	C17	N16	H172	122.7	120.6
N19	C18	C17	N16	359.6	306.2
N19	C18	C17	H171	119.6	65.9
N19	C18	C17	H172	242.3	186.4
C17	C18	N19	H181	120.0	120.0
C17	C18	N19	H182	241.4	240.0
C18	N19	C20	C21	75.9	296.9
C20	N19	C18	H19	240.0	235.8
C18	N19	C20	H201	195.9	56.9
C18	N19	C20	H202	315.3	176.9
H181	C18	N19	H182	121.4	120.0
C20	N19	C18	H181	190.9	303.1
C20	N19	C18	H182	69.5	183.1
C18	N19	C20	H19	120.0	124.2
N19	C20	C21	N16	311.7	53.8
C21	C20	N19	H201	240.0	240.1
C21	C20	N19	H202	120.6	120.0
N19	C20	C21	H211	71.7	173.5
N19	C20	C21	H212	192.1	294.1
H201	C20	N19	H202	240.6	240.0
C17	N16	C21	C20	358.2	308.8
C21	C20	N19	H19	315.9	172.7
N19	C20	C21	H201	120.0	119.9
N19	C20	C21	H202	239.4	240.0
C20	C21	N16	C12	188.0	128.9
N16	C21	C20	H211	240.0	240.3
N16	C21	C20	H212	119.5	119.7
H201	C20	C21	H202	119.4	120.1
H211	C21	C20	H212	239.5	239.5
C17	N16	C21	C12	170.2	180.0
C21	N16	C17	H171	266.5	291.5
C21	N16	C17	H172	143.8	170.9
N16	C21	C20	H201	191.7	293.9
N16	C21	C20	H202	72.3	173.8
C20	C21	N16	H211	120.0	119.8
C20	C21	N16	H212	240.5	240.3
C21	N16	C12	C13	350.4	353.6
C21	N16	C12	C11	169.6	173.3
H211	C21	N16	H212	120.5	120.5
C17	N16	C12	C21	189.5	180.0
C12	N16	C17	H171	76.8	111.4
C12	N16	C17	H172	314.1	350.9
C12	N16	C21	H211	68.0	9.1
C12	N16	C21	H212	307.5	248.6
C13	C12	N16	C11	180.8	180.3
N16	C12	C13	C14	177.6	180.0
N16	C12	C13	H13	357.6	360.0
N16	C12	C11	C10	181.1	180.0
N16	C12	C11	H11	1.1	0.0
N16	C12	C13	C11	179.2	179.7
C13	C12	C11	C10	0.3	359.7
C13	C12	C11	H11	180.3	179.7
C12	C13	C14	C9	1.0	360.0
C14	C13	C12	H13	180.0	180.0
C12	C13	C14	H14	181.0	179.9
N16	C12	C11	C13	180.8	180.3
C11	C12	C13	C14	358.4	0.3
C11	C12	C13	H13	178.4	180.3
C12	C11	C10	C9	1.8	0.1
C10	C11	C12	H11	180.0	180.0
C12	C11	C10	H101	121.7	122.1
C12	C11	C10	H102	248.3	238.0
C14	C13	C12	C11	358.4	0.3
C12	C13	C14	H13	180.0	180.0
C13	C14	C9	C10	1.0	359.8
C13	C14	C9	N7	178.4	180.0
C9	C14	C13	H14	180.0	180.0
C9	C14	C13	H13	181.0	180.0
C13	C14	C9	H14	180.0	180.0
C11	C10	C9	C14	357.6	0.2
C10	C9	C14	N7	182.6	179.8
C14	C9	C10	H101	237.6	238.1
C14	C9	C10	H102	111.1	122.3
C14	C9	N7	C4	342.4	5.1
C12	C11	C10	H11	180.0	180.0
C14	C9	C10	C11	357.6	0.2
C11	C10	C9	N7	180.1	180.0
C9	C10	C11	H101	240.0	238.0
C9	C10	C11	H102	113.4	122.1
H101	C10	C11	H102	233.4	244.1
C14	C9	C10	N7	177.6	180.2
C10	C9	C14	H14	181.0	179.8
C9	C10	C11	H11	181.7	180.0
C11	C10	C9	H101	120.0	122.0
C11	C10	C9	H102	246.6	237.9
C10	C9	N7	C4	159.8	185.2
H101	C10	C9	H102	126.6	115.9
C14	C9	N7	C10	182.6	179.8
N7	C9	C14	H14	358.4	0.0
N7	C9	C10	H101	60.1	58.0
N7	C9	C10	H102	293.5	302.1
C9	N7	C4	N5	356.0	274.9
C9	N7	C4	N3	171.6	94.6
N5	C4	N7	N3	184.4	180.3
N7	C4	N5	C6	180.8	180.0
N7	C4	N3	C2	180.6	180.0
N7	C4	N5	N3	175.5	179.7
N5	C4	N3	C2	356.5	359.8
C4	N5	C6	C1	355.3	360.0
C4	N5	C6	C15	181.5	179.9
N7	C4	N3	N5	184.1	180.3
N3	C4	N5	C6	5.3	0.3
C4	N3	C2	C1	1.2	359.9
C4	N3	C2	H2	181.2	180.0
C6	N5	C4	N3	5.3	0.3
C2	C1	C6	N5	2.3	359.7
C1	C6	N5	C15	173.8	180.0
N5	C6	C1	H1	182.3	180.1
N5	C6	C15	S23	176.6	180.0
N5	C6	C15	C26	1.0	359.8
N3	C2	C1	C6	359.4	0.3
C1	C2	N3	H2	180.0	180.0
N3	C2	C1	H1	179.5	180.0
N5	C6	C1	C2	2.3	359.7
N3	C2	C1	H2	180.0	180.0
C2	C1	C6	C15	176.3	179.8
C6	C1	C2	H1	180.0	180.3
N5	C6	C1	C15	186.0	180.0
C6	C1	C2	H2	179.4	180.3
C2	C1	C6	H1	180.0	179.7
C1	C6	C15	S23	2.8	359.9
C1	C6	C15	C26	187.2	179.7
N5	C6	C15	C1	173.8	180.0
C15	C6	C1	H1	356.3	0.1
S23	C15	C6	C26	175.7	180.2
C6	C15	S23	C24	184.8	180.0
C6	C15	C26	N25	175.8	179.8
C6	C15	C26	C27	355.0	359.9
C6	C15	S23	C26	183.6	179.8
S23	C15	C26	N25	359.4	359.7
S23	C15	C26	C27	178.6	179.7
C15	S23	C24	O28	182.5	180.1
C15	S23	C24	N25	358.5	0.0
C6	C15	C26	S23	176.4	180.2
C26	C15	S23	C24	1.2	0.2
C24	N25	C26	C15	359.4	0.4
C29	N25	C26	C15	179.5	180.1
N25	C26	C15	C27	180.8	179.9
C15	C26	C27	H271	141.5	90.1
C15	C26	C27	H272	261.5	210.1
C15	C26	C27	H273	21.5	330.1
C24	S23	C15	C26	1.2	0.2
O28	C24	S23	N25	184.0	180.0
S23	C24	N25	C29	181.4	180.0
S23	C24	N25	C26	1.5	359.8
S23	C24	O28	N25	175.4	180.0
O28	C24	N25	C29	357.5	360.0
O28	C24	N25	C26	177.5	179.7
C15	C26	N25	C24	359.4	0.4
S23	C24	N25	O28	183.9	180.0
C29	N25	C24	C26	179.9	180.3
C24	N25	C29	H291	305.1	360.0
C24	N25	C29	H292	65.1	120.0
C24	N25	C29	H293	185.1	239.9
C24	N25	C26	C27	180.2	180.3
C15	C26	N25	C29	179.5	180.1
C24	N25	C29	C26	180.1	179.7
C29	N25	C26	C27	0.3	0.1
H291	C29	N25	H292	240.0	240.0
H291	C29	N25	H293	120.0	120.0
H292	C29	N25	H293	240.0	240.1
C15	C26	N25	C27	179.2	180.1
C24	N25	C26	C29	179.9	180.3
C26	N25	C29	H291	125.0	180.3
C26	N25	C29	H292	245.0	300.3
C26	N25	C29	H293	5.0	60.2
N25	C26	C27	H271	320.7	270.2
N25	C26	C27	H272	80.7	30.2
N25	C26	C27	H273	200.7	150.2
C15	C26	C27	N25	180.9	179.9
H271	C27	C26	H272	240.0	240.0
H271	C27	C26	H273	120.0	120.0
H272	C27	C26	H273	240.0	240.0
C18	C17	H171	N16	235.1	241.0
H171	C17	C18	N19	119.6	65.9
C18	C17	H171	H172	117.5	120.5
H171	C17	C18	H181	239.6	185.9
H171	C17	C18	H182	1.0	305.9
H171	C17	N16	C21	266.5	291.5
H171	C17	N16	C12	76.8	111.4
N16	C17	H171	H172	242.5	239.5
C18	C17	H172	N16	123.4	119.0
H172	C17	C18	N19	242.3	186.4
C18	C17	H172	H171	241.7	239.5
H172	C17	C18	H181	2.3	306.5
H172	C17	C18	H182	123.7	66.5
H172	C17	N16	C21	143.8	170.9
H172	C17	N16	C12	314.1	350.9
N16	C17	H172	H171	118.3	120.5
H181	C18	C17	N16	119.6	66.2
C17	C18	H181	N19	237.4	240.1
H181	C18	C17	H171	239.6	185.9
H181	C18	C17	H172	2.3	306.5
C17	C18	H181	H182	118.7	120.0
H181	C18	N19	C20	190.9	303.1
N19	C18	H181	H182	241.3	239.9
H181	C18	N19	H19	310.9	67.3
H182	C18	C17	N16	241.0	186.2
C17	C18	H182	N19	121.8	119.9
H182	C18	C17	H171	1.0	305.9
H182	C18	C17	H172	123.7	66.5
C17	C18	H182	H181	240.9	240.0
H182	C18	N19	C20	69.5	183.1
N19	C18	H182	H181	119.1	120.0
H182	C18	N19	H19	189.5	307.3
C18	N19	H19	C20	240.9	235.6
H19	N19	C18	H181	310.9	67.3
H19	N19	C18	H182	189.5	307.3
H19	N19	C20	C21	315.9	172.7
H19	N19	C20	H201	75.9	292.7
H19	N19	C20	H202	195.3	52.7
N19	C20	H201	C21	241.2	240.2
H201	C20	N19	H19	75.9	292.7
N19	C20	H201	H202	120.6	120.1
H201	C20	C21	N16	191.7	293.9
C21	C20	H201	H202	239.4	239.9
H201	C20	C21	H211	311.7	53.6
H201	C20	C21	H212	72.1	174.1
N19	C20	H202	C21	119.2	119.9
H202	C20	N19	H19	195.3	52.7
N19	C20	H202	H201	239.6	240.0
H202	C20	C21	N16	72.3	173.8
C21	C20	H202	H201	120.4	120.1
H202	C20	C21	H211	192.3	293.5
H202	C20	C21	H212	312.7	54.1
C20	C21	H211	N16	239.1	240.9
H211	C21	C20	H201	311.7	53.6
H211	C21	C20	H202	192.3	293.5
C20	C21	H211	H212	119.5	120.5
H211	C21	N16	C12	68.0	9.1
N16	C21	H211	H212	240.5	239.5
C20	C21	H212	N16	120.6	119.1
H212	C21	C20	H201	72.1	174.1
H212	C21	C20	H202	312.7	54.1
C20	C21	H212	H211	240.3	239.5
H212	C21	N16	C12	307.5	248.6
N16	C21	H212	H211	119.7	120.4
H13	C13	C12	C11	178.4	180.3
C12	C13	H13	C14	180.0	180.0
H13	C13	C14	C9	181.0	180.0
H13	C13	C14	H14	1.0	360.0
C12	C11	H11	C10	180.0	180.0
H11	C11	C10	C9	181.7	180.0
H11	C11	C10	H101	301.7	302.0
H11	C11	C10	H102	68.3	57.9
C13	C14	H14	C9	180.0	180.0
H14	C14	C13	H13	1.0	360.0
H14	C14	C9	C10	181.0	179.8
H14	C14	C9	N7	358.4	0.0
C11	C10	H101	C9	229.3	232.1
H101	C10	C11	H11	301.7	302.0
C11	C10	H101	H102	114.7	116.1
H101	C10	C9	N7	60.1	58.0
C9	C10	H101	H102	245.4	244.0
C11	C10	H102	C9	127.6	128.0
H102	C10	C11	H11	68.3	57.9
C11	C10	H102	H101	243.8	244.0
H102	C10	C9	N7	293.5	302.1
C9	C10	H102	H101	116.2	116.0
N3	C2	H2	C1	180.0	180.0
H2	C2	C1	C6	179.4	180.3
H2	C2	C1	H1	359.5	360.0
C2	C1	H1	C6	180.0	180.3
H1	C1	C2	H2	359.5	360.0
H1	C1	C6	C15	356.3	0.1
H291	C29	N25	C26	125.0	180.3
N25	C29	H291	H292	120.0	120.0
N25	C29	H291	H293	240.0	240.0
H292	C29	H291	H293	120.0	120.0
H292	C29	N25	C26	245.0	300.3
N25	C29	H292	H291	240.0	240.0
N25	C29	H292	H293	120.0	120.0
H291	C29	H292	H293	240.0	240.0
H293	C29	N25	C26	5.0	60.2
N25	C29	H293	H291	120.0	120.0
N25	C29	H293	H292	240.0	240.0
H291	C29	H293	H292	120.0	120.0
C26	C27	H271	H272	120.0	120.0
C26	C27	H271	H273	240.0	240.0
H272	C27	H271	H273	120.0	120.0
C26	C27	H272	H271	240.0	240.0
C26	C27	H272	H273	120.0	120.0
H271	C27	H272	H273	240.0	240.0
C26	C27	H273	H271	120.0	120.0
C26	C27	H273	H272	240.0	240.0
H271	C27	H273	H272	120.0	120.0