PDB Chemical Component Y80

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Y80

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C18	O2	1.431	1.430
O2	C15	1.364	1.358
C16	C15	1.393	1.390
C16	C17	1.390	1.376
C15	C14	1.358	1.390
C17	C12	1.386	1.401
C14	C13	1.366	1.377
C6	C5	1.401	1.382
C6	C7	1.374	1.384
C5	C4	1.390	1.385
C12	C13	1.386	1.401
C12	C11	1.457	1.468
C7	C8	1.394	1.383
C4	N2	1.349	1.399
C4	C3	1.456	1.396
C11	C10	1.353	1.361
C8	C3	1.383	1.384
N2	C1	1.380	1.346
C3	N1	1.438	1.403
C24	C23	1.377	1.379
C24	C19	1.366	1.395
C10	C19	1.504	1.481
C10	C9	1.496	1.470
C23	C22	1.372	1.384
C1	O3	1.280	1.213
C1	C2	1.484	1.507
C19	C20	1.373	1.394
N1	C9	1.406	1.347
N1	C2	1.437	1.473
C9	O1	1.211	1.217
C22	C21	1.358	1.384
C20	C21	1.406	1.380
N2	H1	1.000	0.970
C5	H2	1.080	1.080
C6	H3	1.079	1.080
C7	H4	1.081	1.080
C8	H5	1.080	1.080
C2	H6	1.100	1.090
C2	H7	1.100	1.090
C24	H8	1.080	1.080
C23	H9	1.080	1.080
C22	H10	1.080	1.080
C21	H11	1.080	1.080
C20	H12	1.080	1.080
C11	H13	1.080	1.080
C17	H14	1.080	1.080
C16	H15	1.080	1.080
C18	H16	1.100	1.090
C18	H17	1.100	1.090
C18	H18	1.100	1.090
C14	H19	1.080	1.080
C13	H20	1.080	1.080

Bond Angles for Y80

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O2	C15	C14	122.5	119.9
C16	C15	C14	120.8	120.3
C15	C16	H15	121.3	119.9
C16	C17	H14	119.6	120.1
C15	C14	C13	122.3	120.1
C15	C14	H19	118.9	120.0
C17	C12	C13	120.2	119.8
C12	C13	C14	118.0	119.9
C13	C14	H19	118.8	119.9
C14	C13	H20	121.0	120.1
C6	C5	H2	119.9	120.0
C6	C7	C8	121.0	120.2
C7	C6	H3	119.9	119.8
C6	C7	H4	119.5	119.9
C5	C4	C3	119.5	119.7
C12	C13	H20	121.0	120.1
C12	C11	H13	111.8	119.9
C7	C8	C3	121.0	119.7
C8	C7	H4	119.5	119.9
C7	C8	H5	119.5	120.2
C4	N2	H1	118.3	119.7
C4	C3	C8	118.2	120.2
C4	C3	N1	117.9	118.7
C8	C3	N1	123.8	121.1
C3	C8	H5	119.5	120.1
N2	C1	C2	121.6	120.8
C3	N1	C9	122.9	121.0
C3	N1	C2	117.1	117.8
C24	C23	C22	118.5	120.2
C23	C24	H8	119.5	120.1
C24	C23	H9	120.7	119.9
C24	C19	C20	119.9	119.8
C10	C19	C20	121.3	120.1
C23	C22	C21	122.3	120.2
C22	C23	H9	120.7	119.9
C23	C22	H10	118.9	119.9
C1	C2	N1	103.5	108.9
C1	C2	H6	110.9	109.6
C1	C2	H7	111.0	109.5
C19	C20	C21	119.9	119.8
C19	C20	H12	120.1	120.1
C2	N1	C9	119.8	121.2
N1	C9	O1	118.6	120.0
N1	C2	H6	111.0	109.8
N1	C2	H7	110.9	109.4
C21	C22	H10	118.8	119.9
C22	C21	H11	120.9	119.9
C20	C21	H11	120.9	119.9
H6	C2	H7	109.4	109.6
H16	C18	H17	109.5	109.5
H16	C18	H18	109.5	109.5
H17	C18	H18	109.5	109.5

Torsion Angles for Y80

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C18	O2	C15	C14	4.7	360.0
C16	C15	O2	C14	178.2	180.1
O2	C15	C16	H15	359.5	359.9
O2	C15	C14	C13	178.4	180.0
O2	C15	C14	H19	358.5	0.0
O2	C15	C16	C14	181.8	179.9
C15	C16	C17	H14	186.8	180.0
C16	C15	C14	C13	0.3	359.9
C16	C15	C14	H19	180.3	179.9
C16	C17	C12	C13	350.6	0.0
C14	C15	C16	H15	177.7	180.0
C12	C13	C14	C15	357.3	360.0
C13	C14	C15	H19	180.0	180.0
C15	C14	C13	H20	177.3	180.3
C17	C12	C13	C14	7.1	0.0
C17	C12	C13	H20	187.1	179.7
C17	C12	C11	H13	25.1	216.3
C15	C14	C13	H19	180.0	180.0
C12	C13	C14	H20	180.0	179.7
C6	C5	C4	C3	359.7	0.2
C7	C6	C5	H2	178.4	180.1
C6	C7	C8	C3	0.3	0.1
C8	C7	C6	H4	180.0	179.9
C6	C7	C8	H5	180.2	180.0
C5	C4	N2	H1	20.5	14.1
C5	C4	C3	C8	2.1	359.7
C5	C4	C3	N1	178.6	179.4
C15	C14	C13	C12	357.3	360.0
C12	C13	C14	H19	177.3	180.0
C14	C13	C12	H20	180.0	180.3
C13	C12	C11	H13	218.6	36.0
C8	C7	C6	H3	181.7	179.9
C6	C7	C8	H4	180.0	180.1
C4	C3	C8	C7	357.9	0.2
C7	C8	C3	N1	181.6	180.5
C3	C8	C7	H5	180.0	180.1
C4	N2	C1	C2	358.8	2.7
C7	C8	C3	C4	357.9	0.2
C3	C4	N2	H1	201.5	194.2
C8	C3	C4	N1	183.5	180.3
C4	C3	C8	H5	177.9	180.2
C4	C3	N1	C9	136.6	150.8
C4	C3	N1	C2	321.4	330.6
C3	C8	C7	H4	180.3	180.0
C7	C8	C3	H5	180.0	179.9
C4	C3	C8	N1	176.3	179.7
C8	C3	N1	C9	312.9	330.5
C8	C3	N1	C2	137.7	150.3
N2	C1	C2	N1	324.6	330.4
N2	C1	C2	H6	83.7	90.5
N2	C1	C2	H7	205.6	210.8
C4	C3	N1	C8	183.7	180.3
N1	C3	C8	H5	1.6	0.6
C1	C2	N1	C3	53.5	42.4
C2	N1	C3	C9	184.8	179.8
C3	N1	C9	O1	176.6	357.0
C3	N1	C2	H6	294.4	282.4
C3	N1	C2	H7	172.5	162.1
C23	C24	C19	C20	357.1	0.2
C24	C23	C22	C21	358.9	0.0
C22	C23	C24	H9	180.0	180.0
C24	C23	C22	H10	178.9	179.9
C10	C19	C24	C20	177.1	179.8
C24	C19	C20	C21	0.3	359.5
C24	C19	C20	H12	180.3	179.7
C24	C19	C10	C20	182.9	180.2
C10	C19	C20	C21	183.3	179.7
C10	C19	C20	H12	3.3	359.9
C22	C23	C24	H8	183.3	180.0
C24	C23	C22	H9	180.0	180.0
C21	C22	C23	H10	180.0	180.1
C23	C22	C21	H11	178.6	179.9
C3	N1	C2	C1	53.5	42.4
C1	C2	N1	C9	238.1	222.2
N1	C2	C1	H6	240.9	239.9
N1	C2	C1	H7	119.0	119.6
H6	C2	C1	H7	238.1	239.7
C19	C20	C21	H11	181.8	180.3
C3	N1	C9	C2	184.9	179.8
C9	N1	C2	H6	119.1	102.2
C9	N1	C2	H7	357.2	341.9
C3	N1	C2	C9	175.3	180.2
C1	C2	N1	H6	119.0	120.0
C1	C2	N1	H7	240.9	240.3
C2	N1	C9	O1	351.6	177.3
H6	C2	N1	H7	121.9	120.3
C21	C22	C23	H9	178.9	180.0
C23	C22	C21	H10	180.0	179.9
C19	C20	C21	C22	1.8	0.5
C20	C21	C22	H11	180.0	179.8
C19	C20	C21	H12	180.0	180.2
C20	C21	C22	H10	178.6	179.8
C22	C21	C20	H11	180.0	180.2
H1	N2	C1	C2	178.8	182.7
H2	C5	C4	C3	179.8	180.2
H3	C6	C5	H2	358.4	360.0
H3	C6	C7	C8	181.7	179.9
H3	C6	C7	H4	1.7	360.0
C6	C7	H4	C8	180.0	179.9
H4	C7	C6	H3	1.7	360.0
H4	C7	C8	C3	180.3	180.0
H4	C7	C8	H5	0.2	359.9
C7	C8	H5	C3	180.0	180.1
H5	C8	C7	H4	0.2	359.9
H5	C8	C3	N1	1.6	0.6
C1	C2	H6	N1	245.6	240.5
C1	C2	H6	H7	122.8	120.2
H6	C2	N1	C9	119.1	102.2
N1	C2	H6	H7	237.2	239.8
C1	C2	H7	N1	114.4	119.3
C1	C2	H7	H6	237.2	239.7
H7	C2	N1	C9	357.2	341.9
N1	C2	H7	H6	122.8	120.4
H8	C24	C23	C22	183.3	180.0
H8	C24	C23	H9	3.2	0.0
H8	C24	C19	C20	177.1	180.2
C24	C23	H9	C22	180.0	180.0
H9	C23	C24	H8	3.2	0.0
H9	C23	C22	C21	178.9	180.0
H9	C23	C22	H10	359.0	359.9
C23	C22	H10	C21	180.0	180.1
H10	C22	C23	H9	359.0	359.9
H10	C22	C21	H11	358.6	0.0
H11	C21	C22	H10	358.6	0.0
C19	C20	H12	C21	180.0	179.8
H12	C20	C21	H11	1.8	0.1
H14	C17	C12	C13	170.6	180.0
H15	C16	C15	C14	177.7	180.0
H15	C16	C17	H14	6.8	0.1
H17	C18	H16	H18	120.0	120.1
H16	C18	H17	H18	240.0	239.9
H16	C18	H18	H17	120.0	120.0
C15	C14	H19	C13	180.0	180.0
H19	C14	C13	H20	357.3	0.3
C12	C13	H20	C14	180.0	180.3
H20	C13	C14	H19	357.3	0.3