PDB Chemical Component Y69
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for Y69
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
CAD |
1.520 |
1.531 |
| CAD |
OAS |
1.432 |
1.429 |
| OAS |
CAO |
1.434 |
1.429 |
| CAO |
CAQ |
1.528 |
1.531 |
| CAQ |
OAU |
1.432 |
1.429 |
| OAU |
CAR |
1.438 |
1.430 |
| CAR |
CAP |
1.531 |
1.530 |
| OAB |
CAC |
1.235 |
1.208 |
| CAP |
OAT |
1.430 |
1.429 |
| CAE |
CAC |
1.536 |
1.507 |
| CAE |
CAF |
1.527 |
1.531 |
| OAT |
CAN |
1.437 |
1.429 |
| CAG |
CAF |
1.544 |
1.530 |
| CAG |
CAH |
1.535 |
1.530 |
| CAI |
CAH |
1.539 |
1.529 |
| CAI |
CAJ |
1.541 |
1.530 |
| CAN |
CAM |
1.529 |
1.530 |
| CAK |
CAJ |
1.543 |
1.529 |
| CAK |
CAL |
1.542 |
1.530 |
| CAM |
CAL |
1.537 |
1.531 |
| CAC |
H1 |
1.080 |
1.080 |
| CAE |
H2 |
1.100 |
1.090 |
| CAE |
H3 |
1.100 |
1.090 |
| CAF |
H4 |
1.100 |
1.089 |
| CAF |
H5 |
1.100 |
1.091 |
| CAG |
H6 |
1.100 |
1.089 |
| CAG |
H7 |
1.100 |
1.091 |
| CAH |
H8 |
1.100 |
1.091 |
| CAH |
H9 |
1.100 |
1.090 |
| CAI |
H10 |
1.100 |
1.090 |
| CAI |
H11 |
1.099 |
1.090 |
| CAJ |
H12 |
1.100 |
1.090 |
| CAJ |
H13 |
1.100 |
1.090 |
| CAK |
H14 |
1.100 |
1.091 |
| CAK |
H15 |
1.100 |
1.090 |
| CAL |
H16 |
1.100 |
1.089 |
| CAL |
H17 |
1.100 |
1.091 |
| CAM |
H18 |
1.100 |
1.089 |
| CAM |
H19 |
1.100 |
1.091 |
| CAN |
H20 |
1.099 |
1.090 |
| CAN |
H21 |
1.100 |
1.090 |
| CAP |
H22 |
1.100 |
1.090 |
| CAP |
H23 |
1.100 |
1.090 |
| CAR |
H24 |
1.100 |
1.091 |
| CAR |
H25 |
1.100 |
1.090 |
| CAQ |
H26 |
1.100 |
1.090 |
| CAQ |
H27 |
1.100 |
1.090 |
| CAO |
H28 |
1.099 |
1.090 |
| CAO |
H29 |
1.100 |
1.090 |
| CAD |
H30 |
1.100 |
1.090 |
| CAD |
H31 |
1.100 |
1.090 |
| CAA |
H32 |
1.100 |
1.090 |
| CAA |
H33 |
1.100 |
1.090 |
| CAA |
H34 |
1.100 |
1.091 |
Bond Angles for Y69
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAA |
CAD |
H30 |
109.2 |
109.5 |
| CAA |
CAD |
H31 |
109.2 |
109.4 |
| OAS |
CAO |
H28 |
108.9 |
109.5 |
| OAS |
CAO |
H29 |
109.0 |
109.5 |
| CAO |
CAQ |
H26 |
109.8 |
109.5 |
| CAO |
CAQ |
H27 |
109.7 |
109.4 |
| OAU |
CAR |
H24 |
109.3 |
109.5 |
| OAU |
CAR |
H25 |
109.3 |
109.5 |
| CAR |
CAP |
H22 |
109.5 |
109.5 |
| CAR |
CAP |
H23 |
109.5 |
109.5 |
| OAB |
CAC |
H1 |
119.3 |
120.0 |
| CAE |
CAC |
H1 |
119.3 |
120.0 |
| CAF |
CAE |
H2 |
109.2 |
109.4 |
| CAF |
CAE |
H3 |
109.3 |
109.4 |
| CAE |
CAF |
H4 |
109.3 |
109.5 |
| CAE |
CAF |
H5 |
109.3 |
109.5 |
| OAT |
CAN |
H20 |
109.6 |
109.4 |
| OAT |
CAN |
H21 |
109.6 |
109.5 |
| CAG |
CAF |
H4 |
109.4 |
109.5 |
| CAG |
CAF |
H5 |
109.4 |
109.4 |
| CAH |
CAG |
H6 |
109.3 |
109.4 |
| CAH |
CAG |
H7 |
109.3 |
109.4 |
| CAG |
CAH |
H8 |
109.2 |
109.5 |
| CAG |
CAH |
H9 |
109.2 |
109.5 |
| CAI |
CAH |
H8 |
109.2 |
109.4 |
| CAI |
CAH |
H9 |
109.2 |
109.5 |
| CAJ |
CAI |
H10 |
109.4 |
109.5 |
| CAJ |
CAI |
H11 |
109.4 |
109.4 |
| CAI |
CAJ |
H12 |
109.3 |
109.5 |
| CAI |
CAJ |
H13 |
109.3 |
109.5 |
| CAN |
CAM |
H18 |
109.2 |
109.5 |
| CAN |
CAM |
H19 |
109.2 |
109.5 |
| CAK |
CAJ |
H12 |
109.3 |
109.5 |
| CAK |
CAJ |
H13 |
109.3 |
109.5 |
| CAL |
CAK |
H14 |
109.0 |
109.4 |
| CAL |
CAK |
H15 |
109.0 |
109.4 |
| CAK |
CAL |
H16 |
109.1 |
109.5 |
| CAK |
CAL |
H17 |
109.2 |
109.5 |
| CAM |
CAL |
H16 |
109.1 |
109.5 |
| CAM |
CAL |
H17 |
109.1 |
109.4 |
| H2 |
CAE |
H3 |
109.5 |
109.5 |
| H4 |
CAF |
H5 |
109.4 |
109.5 |
| H6 |
CAG |
H7 |
109.5 |
109.5 |
| H8 |
CAH |
H9 |
109.5 |
109.5 |
| H10 |
CAI |
H11 |
109.5 |
109.4 |
| H12 |
CAJ |
H13 |
109.4 |
109.4 |
| H14 |
CAK |
H15 |
109.5 |
109.5 |
| H16 |
CAL |
H17 |
109.5 |
109.5 |
| H18 |
CAM |
H19 |
109.5 |
109.5 |
| H20 |
CAN |
H21 |
109.5 |
109.5 |
| H22 |
CAP |
H23 |
109.5 |
109.5 |
| H24 |
CAR |
H25 |
109.4 |
109.5 |
| H26 |
CAQ |
H27 |
109.4 |
109.5 |
| H28 |
CAO |
H29 |
109.5 |
109.5 |
| H30 |
CAD |
H31 |
109.5 |
109.5 |
| H32 |
CAA |
H33 |
109.5 |
109.5 |
| H32 |
CAA |
H34 |
109.5 |
109.5 |
| H33 |
CAA |
H34 |
109.5 |
109.5 |
Torsion Angles for Y69
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H30 |
CAD |
CAA |
H31 |
240.4 |
120.0 |
| CAD |
OAS |
CAO |
H28 |
314.7 |
60.0 |
| CAD |
OAS |
CAO |
H29 |
74.1 |
299.9 |
| OAS |
CAO |
CAQ |
H26 |
289.4 |
305.0 |
| OAS |
CAO |
CAQ |
H27 |
49.7 |
185.0 |
| H28 |
CAO |
OAS |
H29 |
240.6 |
120.0 |
| H26 |
CAQ |
CAO |
H27 |
239.7 |
120.0 |
| CAQ |
OAU |
CAR |
H24 |
22.5 |
60.0 |
| CAQ |
OAU |
CAR |
H25 |
142.2 |
300.0 |
| OAU |
CAR |
CAP |
H22 |
281.6 |
305.0 |
| OAU |
CAR |
CAP |
H23 |
41.7 |
185.0 |
| H24 |
CAR |
OAU |
H25 |
240.2 |
120.0 |
| H22 |
CAP |
CAR |
H23 |
239.9 |
120.0 |
| CAE |
CAC |
OAB |
H1 |
180.0 |
180.2 |
| CAP |
OAT |
CAN |
H20 |
272.0 |
60.0 |
| CAP |
OAT |
CAN |
H21 |
32.2 |
300.0 |
| OAB |
CAC |
CAE |
H1 |
180.0 |
179.8 |
| CAF |
CAE |
CAC |
H1 |
46.7 |
305.2 |
| CAG |
CAF |
CAE |
H4 |
239.9 |
240.0 |
| CAG |
CAF |
CAE |
H5 |
120.1 |
119.9 |
| H2 |
CAE |
CAF |
H3 |
119.7 |
120.0 |
| H4 |
CAF |
CAE |
H5 |
240.2 |
240.0 |
| OAT |
CAN |
CAM |
H18 |
214.4 |
60.0 |
| OAT |
CAN |
CAM |
H19 |
334.1 |
300.0 |
| H20 |
CAN |
OAT |
H21 |
239.9 |
120.0 |
| CAG |
CAF |
CAE |
H2 |
20.1 |
60.0 |
| CAG |
CAF |
CAE |
H3 |
260.4 |
300.0 |
| CAE |
CAF |
CAG |
H4 |
120.1 |
120.0 |
| CAE |
CAF |
CAG |
H5 |
239.9 |
240.0 |
| H4 |
CAF |
CAG |
H5 |
119.8 |
120.0 |
| CAH |
CAG |
CAF |
H4 |
50.1 |
60.0 |
| CAH |
CAG |
CAF |
H5 |
290.3 |
300.0 |
| CAI |
CAH |
CAG |
H8 |
239.8 |
240.0 |
| CAI |
CAH |
CAG |
H9 |
120.2 |
120.0 |
| H6 |
CAG |
CAH |
H7 |
119.9 |
119.9 |
| H8 |
CAH |
CAG |
H9 |
240.3 |
240.0 |
| CAI |
CAH |
CAG |
H6 |
38.0 |
60.0 |
| CAI |
CAH |
CAG |
H7 |
278.1 |
300.0 |
| CAG |
CAH |
CAI |
H8 |
120.2 |
120.0 |
| CAG |
CAH |
CAI |
H9 |
239.8 |
240.0 |
| H8 |
CAH |
CAI |
H9 |
119.7 |
120.0 |
| CAJ |
CAI |
CAH |
H8 |
77.0 |
60.0 |
| CAJ |
CAI |
CAH |
H9 |
317.3 |
300.0 |
| CAK |
CAJ |
CAI |
H12 |
239.9 |
240.0 |
| CAK |
CAJ |
CAI |
H13 |
120.1 |
120.0 |
| H10 |
CAI |
CAJ |
H11 |
119.9 |
119.9 |
| H12 |
CAJ |
CAI |
H13 |
240.3 |
240.0 |
| CAN |
CAM |
CAL |
H16 |
119.3 |
60.0 |
| CAN |
CAM |
CAL |
H17 |
359.8 |
300.0 |
| H18 |
CAM |
CAN |
H19 |
240.3 |
120.0 |
| CAK |
CAJ |
CAI |
H10 |
97.8 |
60.0 |
| CAK |
CAJ |
CAI |
H11 |
338.0 |
300.0 |
| CAI |
CAJ |
CAK |
H12 |
120.1 |
120.0 |
| CAI |
CAJ |
CAK |
H13 |
239.9 |
240.0 |
| H12 |
CAJ |
CAK |
H13 |
119.8 |
119.9 |
| CAL |
CAK |
CAJ |
H12 |
72.2 |
60.0 |
| CAL |
CAK |
CAJ |
H13 |
312.5 |
300.0 |
| CAM |
CAL |
CAK |
H16 |
239.8 |
240.0 |
| CAM |
CAL |
CAK |
H17 |
120.2 |
120.0 |
| H14 |
CAK |
CAL |
H15 |
119.5 |
119.9 |
| H16 |
CAL |
CAK |
H17 |
240.4 |
240.0 |
| CAM |
CAL |
CAK |
H14 |
29.4 |
59.9 |
| CAM |
CAL |
CAK |
H15 |
269.9 |
300.0 |
| CAK |
CAL |
CAM |
H16 |
120.2 |
120.0 |
| CAK |
CAL |
CAM |
H17 |
239.8 |
240.0 |
| H16 |
CAL |
CAM |
H17 |
119.5 |
120.0 |
| H2 |
CAE |
CAC |
H1 |
166.8 |
65.2 |
| CAF |
CAE |
H2 |
H3 |
240.4 |
240.1 |
| H2 |
CAE |
CAF |
H4 |
140.2 |
180.0 |
| H2 |
CAE |
CAF |
H5 |
260.0 |
300.0 |
| H3 |
CAE |
CAC |
H1 |
286.6 |
185.3 |
| CAF |
CAE |
H3 |
H2 |
119.6 |
119.9 |
| H3 |
CAE |
CAF |
H4 |
20.5 |
60.0 |
| H3 |
CAE |
CAF |
H5 |
140.3 |
180.0 |
| H4 |
CAF |
CAE |
H2 |
140.2 |
180.0 |
| H4 |
CAF |
CAE |
H3 |
20.5 |
60.0 |
| CAE |
CAF |
H4 |
H5 |
119.7 |
120.0 |
| CAG |
CAF |
H4 |
H5 |
240.2 |
240.0 |
| H5 |
CAF |
CAE |
H2 |
260.0 |
300.0 |
| H5 |
CAF |
CAE |
H3 |
140.3 |
180.0 |
| CAE |
CAF |
H5 |
H4 |
240.3 |
240.0 |
| CAG |
CAF |
H5 |
H4 |
119.8 |
120.0 |
| H6 |
CAG |
CAF |
H4 |
170.1 |
180.0 |
| H6 |
CAG |
CAF |
H5 |
50.3 |
60.0 |
| CAH |
CAG |
H6 |
H7 |
240.2 |
240.1 |
| H6 |
CAG |
CAH |
H8 |
158.1 |
180.0 |
| H6 |
CAG |
CAH |
H9 |
277.8 |
300.0 |
| H7 |
CAG |
CAF |
H4 |
290.0 |
300.0 |
| H7 |
CAG |
CAF |
H5 |
170.2 |
180.0 |
| CAH |
CAG |
H7 |
H6 |
119.8 |
119.9 |
| H7 |
CAG |
CAH |
H8 |
38.2 |
60.0 |
| H7 |
CAG |
CAH |
H9 |
157.9 |
180.0 |
| H8 |
CAH |
CAG |
H6 |
158.1 |
180.0 |
| H8 |
CAH |
CAG |
H7 |
38.2 |
60.0 |
| CAG |
CAH |
H8 |
H9 |
119.5 |
120.0 |
| CAI |
CAH |
H8 |
H9 |
240.6 |
240.0 |
| H9 |
CAH |
CAG |
H6 |
277.8 |
300.0 |
| H9 |
CAH |
CAG |
H7 |
157.9 |
180.0 |
| CAG |
CAH |
H9 |
H8 |
240.5 |
240.0 |
| CAI |
CAH |
H9 |
H8 |
119.4 |
120.0 |
| H10 |
CAI |
CAH |
H8 |
197.0 |
180.0 |
| H10 |
CAI |
CAH |
H9 |
77.4 |
60.0 |
| CAJ |
CAI |
H10 |
H11 |
240.2 |
240.1 |
| H10 |
CAI |
CAJ |
H12 |
218.0 |
180.0 |
| H10 |
CAI |
CAJ |
H13 |
337.7 |
299.9 |
| H11 |
CAI |
CAH |
H8 |
316.9 |
300.0 |
| H11 |
CAI |
CAH |
H9 |
197.2 |
180.0 |
| CAJ |
CAI |
H11 |
H10 |
119.8 |
119.9 |
| H11 |
CAI |
CAJ |
H12 |
98.1 |
60.1 |
| H11 |
CAI |
CAJ |
H13 |
217.9 |
180.0 |
| H12 |
CAJ |
CAI |
H10 |
218.0 |
180.0 |
| H12 |
CAJ |
CAI |
H11 |
98.1 |
60.1 |
| CAI |
CAJ |
H12 |
H13 |
119.6 |
120.0 |
| CAK |
CAJ |
H12 |
H13 |
240.3 |
240.0 |
| H13 |
CAJ |
CAI |
H10 |
337.7 |
299.9 |
| H13 |
CAJ |
CAI |
H11 |
217.9 |
180.0 |
| CAI |
CAJ |
H13 |
H12 |
240.3 |
240.0 |
| CAK |
CAJ |
H13 |
H12 |
119.7 |
120.0 |
| H14 |
CAK |
CAJ |
H12 |
192.5 |
179.9 |
| H14 |
CAK |
CAJ |
H13 |
72.8 |
60.0 |
| CAL |
CAK |
H14 |
H15 |
240.8 |
240.1 |
| H14 |
CAK |
CAL |
H16 |
149.6 |
180.0 |
| H14 |
CAK |
CAL |
H17 |
269.2 |
300.0 |
| H15 |
CAK |
CAJ |
H12 |
312.0 |
300.0 |
| H15 |
CAK |
CAJ |
H13 |
192.2 |
180.0 |
| CAL |
CAK |
H15 |
H14 |
119.2 |
119.9 |
| H15 |
CAK |
CAL |
H16 |
30.1 |
60.0 |
| H15 |
CAK |
CAL |
H17 |
149.7 |
180.0 |
| H16 |
CAL |
CAK |
H14 |
149.6 |
180.0 |
| H16 |
CAL |
CAK |
H15 |
30.1 |
60.0 |
| CAK |
CAL |
H16 |
H17 |
119.4 |
120.0 |
| CAM |
CAL |
H16 |
H17 |
240.7 |
240.1 |
| H17 |
CAL |
CAK |
H14 |
269.2 |
300.0 |
| H17 |
CAL |
CAK |
H15 |
149.7 |
180.0 |
| CAK |
CAL |
H17 |
H16 |
240.6 |
240.0 |
| CAM |
CAL |
H17 |
H16 |
119.3 |
120.0 |
| CAN |
CAM |
H18 |
H19 |
119.5 |
239.9 |
| H18 |
CAM |
CAL |
H16 |
359.2 |
180.0 |
| H18 |
CAM |
CAL |
H17 |
239.6 |
60.0 |
| CAN |
CAM |
H19 |
H18 |
240.4 |
120.1 |
| H19 |
CAM |
CAL |
H16 |
239.5 |
300.0 |
| H19 |
CAM |
CAL |
H17 |
119.9 |
180.0 |
| OAT |
CAN |
H20 |
H21 |
120.2 |
240.0 |
| H20 |
CAN |
CAM |
H18 |
94.5 |
180.0 |
| H20 |
CAN |
CAM |
H19 |
214.2 |
59.9 |
| OAT |
CAN |
H21 |
H20 |
239.8 |
120.0 |
| H21 |
CAN |
CAM |
H18 |
334.3 |
300.0 |
| H21 |
CAN |
CAM |
H19 |
94.1 |
180.0 |
| CAR |
CAP |
H22 |
H23 |
120.1 |
240.0 |
| CAR |
CAP |
H23 |
H22 |
239.9 |
120.1 |
| OAU |
CAR |
H24 |
H25 |
119.7 |
240.0 |
| H24 |
CAR |
CAP |
H22 |
161.4 |
65.0 |
| H24 |
CAR |
CAP |
H23 |
281.5 |
305.0 |
| OAU |
CAR |
H25 |
H24 |
240.3 |
120.0 |
| H25 |
CAR |
CAP |
H22 |
41.7 |
185.0 |
| H25 |
CAR |
CAP |
H23 |
161.8 |
65.0 |
| CAO |
CAQ |
H26 |
H27 |
120.5 |
240.0 |
| CAO |
CAQ |
H27 |
H26 |
239.5 |
120.0 |
| OAS |
CAO |
H28 |
H29 |
119.1 |
240.0 |
| H28 |
CAO |
CAQ |
H26 |
169.1 |
65.0 |
| H28 |
CAO |
CAQ |
H27 |
289.4 |
305.0 |
| OAS |
CAO |
H29 |
H28 |
240.9 |
120.0 |
| H29 |
CAO |
CAQ |
H26 |
49.7 |
185.0 |
| H29 |
CAO |
CAQ |
H27 |
170.0 |
65.0 |
| CAA |
CAD |
H30 |
H31 |
119.4 |
240.0 |
| CAA |
CAD |
H31 |
H30 |
240.6 |
120.0 |
| H32 |
CAA |
CAD |
H30 |
300.2 |
180.0 |
| H32 |
CAA |
CAD |
H31 |
59.8 |
60.0 |
| H33 |
CAA |
H32 |
H34 |
120.0 |
120.0 |
| H33 |
CAA |
CAD |
H30 |
60.2 |
300.1 |
| H33 |
CAA |
CAD |
H31 |
179.8 |
180.0 |
| H32 |
CAA |
H33 |
H34 |
240.0 |
240.0 |
| H34 |
CAA |
CAD |
H30 |
180.2 |
60.0 |
| H34 |
CAA |
CAD |
H31 |
299.8 |
300.0 |
| H32 |
CAA |
H34 |
H33 |
120.0 |
120.1 |