PDB Chemical Component Y38

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Y38

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C32	C33	1.388	1.384
C32	C31	1.395	1.384
C33	C3B	1.395	1.380
C31	C34	1.396	1.380
C3B	C29	1.383	1.396
C34	C29	1.392	1.396
C29	C27	1.500	1.478
O28	C27	1.224	1.215
C27	N26	1.329	1.347
N26	C25	1.471	1.465
C25	C24	1.532	1.530
C20	C18	1.531	1.530
C18	C19	1.526	1.530
C18	C17	1.537	1.530
C24	N16	1.472	1.465
N16	C17	1.467	1.465
N16	S13	1.521	1.656
C17	C21	1.499	1.507
O22	C21	1.245	1.207
C21	O23	1.242	1.342
S13	O14	1.468	1.421
S13	O15	1.472	1.421
S13	C10	1.629	1.762
C10	C9	1.404	1.383
C10	C11	1.412	1.384
C9	C8	1.400	1.380
C11	C12	1.410	1.380
C8	C7	1.386	1.394
C12	C7	1.408	1.394
C7	C1	1.504	1.484
C2	C1	1.393	1.393
C2	C3	1.398	1.381
C1	C6	1.394	1.394
C3	C4	1.393	1.383
C6	C5	1.394	1.380
C4	C5	1.392	1.383
C17	H1	1.100	1.090
C18	H2	1.100	1.090
C19	H3	1.100	1.090
C19	H4	1.100	1.090
C19	H5	1.100	1.090
C20	H6	1.100	1.091
C20	H7	1.100	1.090
C20	H8	1.100	1.090
O23	H9	0.950	0.967
C24	H10	1.100	1.090
C24	H11	1.100	1.090
C25	H12	1.100	1.090
C25	H13	1.101	1.090
N26	H14	1.000	0.970
C34	H15	1.079	1.079
C31	H16	1.080	1.080
C32	H17	1.080	1.079
C3B	H18	1.080	1.080
C33	H19	1.080	1.080
C11	H20	1.080	1.080
C12	H21	1.080	1.080
C8	H22	1.080	1.080
C9	H23	1.080	1.079
C2	H24	1.080	1.080
C3	H25	1.080	1.080
C4	H26	1.080	1.080
C5	H27	1.080	1.080
C6	H28	1.080	1.079

Bond Angles for Y38

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C32	C33	C3B	119.4	120.1
C33	C32	H17	119.8	119.9
C32	C33	H19	120.3	119.9
C32	C31	H16	120.1	119.9
C33	C3B	H18	119.9	120.1
C31	C34	H15	120.4	120.1
C27	N26	H14	119.1	120.0
N26	C25	H12	109.0	109.5
N26	C25	H13	109.1	109.5
C25	C24	H10	108.5	109.5
C25	C24	H11	108.5	109.5
C20	C18	H2	108.2	109.5
C19	C18	H2	108.3	109.5
C18	C19	H3	109.5	109.5
C18	C19	H4	109.5	109.4
C18	C19	H5	109.5	109.5
C18	C17	C21	108.9	109.5
C18	C17	H1	107.2	109.5
N16	C17	C21	109.4	109.5
N16	C17	H1	108.1	109.4
N16	S13	C10	98.0	107.2
C17	C21	O23	118.8	120.0
C21	C17	H1	107.6	109.5
O22	C21	O23	121.7	120.0
C21	O23	H9	109.5	116.9
O14	S13	C10	85.6	106.4
S13	C10	C9	121.3	119.9
S13	C10	C11	124.0	119.9
C11	C10	C9	114.7	120.3
C10	C9	C8	122.7	120.1
C10	C9	H23	118.6	120.0
C10	C11	C12	122.9	120.1
C10	C11	H20	118.6	119.9
C9	C8	H22	118.9	120.1
C11	C12	C7	120.9	119.9
C12	C11	H20	118.6	120.0
C11	C12	H21	119.6	120.1
C8	C7	C1	120.9	120.1
C12	C7	C1	122.4	120.1
C7	C12	H21	119.5	120.0
C7	C1	C6	119.7	120.1
C2	C1	C6	118.3	119.7
C2	C3	C4	119.7	120.1
C3	C2	H24	119.3	120.0
C2	C3	H25	120.1	120.0
C1	C6	C5	120.8	119.9
C1	C6	H28	119.6	120.1
C3	C4	C5	119.3	120.3
C4	C3	H25	120.2	119.9
C3	C4	H26	120.3	119.9
C6	C5	H27	119.8	119.9
C5	C4	H26	120.3	119.9
C4	C5	H27	119.7	120.0
H3	C19	H4	109.5	109.5
H3	C19	H5	109.4	109.5
H4	C19	H5	109.5	109.5
H6	C20	H7	109.5	109.4
H6	C20	H8	109.5	109.4
H7	C20	H8	109.5	109.5
H10	C24	H11	109.5	109.5
H12	C25	H13	109.5	109.4

Torsion Angles for Y38

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C33	C32	C31	H16	179.8	180.0
C32	C33	C3B	H18	178.8	180.3
C32	C31	C34	H15	179.3	180.1
C3B	C33	C32	H17	181.1	180.0
C32	C33	C3B	H19	180.0	180.3
C29	C27	N26	H14	354.4	360.0
O28	C27	N26	H14	172.4	180.0
C27	N26	C25	H12	51.7	59.9
C27	N26	C25	H13	171.2	300.0
N26	C25	C24	H10	308.3	62.6
N26	C25	C24	H11	67.2	302.5
H12	C25	N26	H13	240.5	119.9
H10	C24	C25	H11	241.1	120.1
C19	C18	C20	H2	117.6	240.0
C20	C18	C19	H3	180.0	300.0
C20	C18	C19	H4	300.0	60.0
C20	C18	C19	H5	60.0	180.0
C20	C18	C17	C21	190.0	298.0
C20	C18	C17	H1	306.1	58.0
C20	C18	C19	H2	242.5	120.0
C19	C18	C17	C21	312.2	178.1
C19	C18	C17	H1	68.3	298.1
H3	C19	C18	H4	240.0	240.0
H3	C19	C18	H5	120.0	120.0
H4	C19	C18	H5	240.0	240.0
N16	C17	C18	C21	236.6	240.0
N16	C17	C18	H1	120.4	119.9
C18	C17	C21	O23	109.8	87.5
C21	C17	C18	H1	243.8	240.0
C24	N16	C17	H1	175.5	353.9
C24	N16	S13	C10	90.0	292.4
C18	C17	N16	C21	123.2	120.1
C18	C17	N16	H1	240.1	240.0
C17	N16	S13	C10	273.2	112.4
N16	C17	C21	O23	236.7	207.5
C21	C17	N16	H1	116.9	119.9
O14	S13	N16	C10	270.5	246.4
N16	S13	C10	C9	274.5	82.2
N16	S13	C10	C11	94.2	262.5
C18	C17	C21	H1	115.9	120.0
N16	C17	C21	H1	242.8	240.1
O22	C21	C17	O23	179.7	180.1
C17	C21	O23	H9	179.6	180.0
C17	C21	O22	O23	180.3	179.9
O22	C21	C17	H1	173.6	147.5
O22	C21	O23	H9	360.0	360.0
O23	C21	C17	H1	353.9	327.4
N16	S13	O14	C10	96.6	114.1
O14	S13	C10	C9	34.9	195.7
O14	S13	C10	C11	214.6	16.0
C11	C10	S13	C9	179.7	180.3
S13	C10	C9	C8	180.6	179.8
S13	C10	C9	H23	0.6	0.0
S13	C10	C11	C12	179.7	179.9
S13	C10	C11	H20	359.7	360.0
S13	C10	C9	C11	179.7	180.3
C9	C10	C11	C12	359.4	0.2
C9	C10	C11	H20	179.4	180.3
C10	C9	C8	H22	179.1	180.3
S13	C10	C11	C9	180.3	179.7
C11	C10	C9	C8	0.9	359.5
C11	C10	C9	H23	180.9	179.7
C10	C11	C12	C7	0.3	0.1
C12	C11	C10	H20	180.0	180.0
C10	C11	C12	H21	180.3	179.9
C10	C9	C8	H23	180.0	180.2
C9	C8	C7	C1	179.4	179.8
C12	C11	C10	C9	359.4	0.2
C10	C11	C12	H20	180.0	180.0
C11	C12	C7	C1	180.9	179.9
C7	C12	C11	H21	180.0	180.2
C10	C9	C8	C7	359.1	0.5
C12	C7	C8	C1	181.1	180.0
C8	C7	C12	H21	179.8	180.1
C8	C7	C1	C6	218.2	0.0
C7	C12	C11	H20	180.3	180.0
C11	C12	C7	H21	180.0	179.8
C8	C7	C12	C1	178.9	180.0
C12	C7	C1	C6	37.1	180.0
C1	C7	C12	H21	0.9	0.1
C2	C1	C7	C6	177.5	180.2
C7	C1	C6	C5	178.7	179.7
C7	C1	C6	H28	358.7	360.0
C7	C1	C2	C6	182.5	179.8
C2	C1	C6	C5	1.2	359.5
C2	C1	C6	H28	181.2	179.8
C3	C2	C1	C6	358.9	0.2
C2	C3	C4	C5	0.1	360.0
C4	C3	C2	H25	180.0	180.0
C2	C3	C4	H26	180.1	180.0
C1	C6	C5	H27	179.4	180.3
C4	C3	C2	H24	180.5	180.0
C2	C3	C4	H25	180.0	180.0
C5	C4	C3	H26	180.0	180.0
C3	C4	C5	H27	179.9	179.9
C1	C6	C5	H28	180.0	180.2
C6	C5	C4	H26	180.0	179.7
C4	C5	C6	H27	180.0	180.2
C1	C6	C5	C4	359.4	0.5
C5	C4	C3	H25	180.1	180.0
C3	C4	C5	H26	180.0	180.0
C6	C5	C4	H27	180.0	179.8
C18	C17	H1	C21	243.0	240.0
N16	C17	H1	C21	118.0	120.0
H1	C17	C21	O23	353.9	327.4
H2	C18	C19	H3	297.5	180.0
H2	C18	C19	H4	57.6	300.0
H2	C18	C19	H5	177.6	60.0
H2	C18	C17	C21	70.9	58.0
H2	C18	C17	H1	187.0	178.0
H3	C19	C18	H2	297.5	180.0
C18	C19	H3	H4	120.0	120.0
C18	C19	H3	H5	240.0	240.0
H4	C19	H3	H5	120.0	120.0
H4	C19	C18	H2	57.6	300.0
C18	C19	H4	H3	240.0	240.0
C18	C19	H4	H5	120.0	119.9
H3	C19	H4	H5	240.0	240.0
H5	C19	C18	H2	177.6	60.0
C18	C19	H5	H3	120.0	120.1
C18	C19	H5	H4	240.0	240.1
H3	C19	H5	H4	120.0	120.0
H6	C20	C18	H2	62.4	300.0
H7	C20	H6	H8	120.0	120.0
H7	C20	C18	H2	182.4	60.0
H6	C20	H7	H8	240.0	240.1
H8	C20	C18	H2	302.4	180.0
H6	C20	H8	H7	120.0	120.0
C25	C24	H10	H11	118.3	240.0
C25	C24	H11	H10	241.7	120.0
N26	C25	H12	H13	119.3	240.0
H12	C25	C24	H10	188.1	182.6
H12	C25	C24	H11	307.0	62.5
N26	C25	H13	H12	240.8	120.0
H13	C25	C24	H10	68.6	302.6
H13	C25	C24	H11	187.5	182.5
H14	N26	C25	H12	231.7	239.9
H14	N26	C25	H13	351.2	120.0
H16	C31	C34	H15	359.3	0.1
H17	C32	C33	C3B	181.1	180.0
H17	C32	C33	H19	1.1	0.3
H17	C32	C31	H16	359.8	359.7
C32	C33	H19	C3B	180.0	179.7
H19	C33	C32	H17	1.1	0.3
H19	C33	C3B	H18	358.8	360.0
H20	C11	C10	C9	179.4	180.3
C10	C11	H20	C12	180.0	180.0
H20	C11	C12	C7	180.3	180.0
H20	C11	C12	H21	0.3	359.9
C11	C12	H21	C7	180.0	180.2
H21	C12	C11	H20	0.3	359.9
H21	C12	C7	C1	0.9	0.1
H22	C8	C7	C1	359.4	360.0
C10	C9	H23	C8	180.0	179.8
H23	C9	C8	H22	359.1	0.1
H24	C2	C1	C6	178.9	180.2
H24	C2	C3	C4	180.5	180.0
H24	C2	C3	H25	0.5	0.0
C2	C3	H25	C4	180.0	180.0
H25	C3	C2	H24	0.5	0.0
H25	C3	C4	C5	180.1	180.0
H25	C3	C4	H26	0.1	360.0
C3	C4	H26	C5	180.0	180.0
H26	C4	C3	H25	0.1	360.0
H26	C4	C5	H27	359.9	359.9
H27	C5	C4	H26	359.9	359.9
C1	C6	H28	C5	180.0	179.8
H28	C6	C5	H27	359.4	0.1