PDB Chemical Component Y27

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Y27

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O23 C22 1.234 1.212
C22 C31 1.508 1.507
C22 N21 1.423 1.347
C31 C36 1.532 1.531
C31 C32 1.542 1.528
C31 H31 1.115 1.089
C36 C35 1.532 1.530
C36 H361 1.115 1.089
C36 H362 1.115 1.090
C35 C34 1.534 1.529
C35 H351 1.115 1.090
C35 H352 1.115 1.090
C34 C33 1.552 1.530
C34 C41 1.559 1.530
C34 H34 1.115 1.090
C33 C32 1.569 1.530
C33 H331 1.115 1.089
C33 H332 1.116 1.091
C32 H321 1.115 1.090
C32 H322 1.115 1.090
C41 C42 1.540 1.530
C41 N43 1.507 1.467
C41 H41 1.115 1.090
C42 H421 1.115 1.090
C42 H422 1.115 1.090
C42 H423 1.115 1.090
N43 H431 1.020 1.010
N43 H432 1.020 1.009
N21 C14 1.443 1.395
N21 H21 1.020 0.970
C14 C15 1.405 1.393
C14 C13 1.425 1.394
C15 C16 1.397 1.380
C15 H15 1.103 1.080
C16 N11 1.350 1.319
C16 H16 1.103 1.081
N11 C12 1.342 1.319
C12 C13 1.387 1.380
C12 H12 1.103 1.080
C13 H13 1.103 1.080

Bond Angles for Y27

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O23 C22 C31 123.3 120.0
O23 C22 N21 123.0 120.0
C31 C22 N21 113.6 120.0
C22 C31 C36 109.5 109.4
C22 C31 C32 113.3 109.5
C22 C31 H31 107.6 109.5
C22 N21 C14 127.0 120.0
C22 N21 H21 115.7 120.0
C36 C31 C32 111.8 109.4
C36 C31 H31 109.3 109.5
C31 C36 C35 110.0 109.4
C31 C36 H361 112.0 109.5
C31 C36 H362 112.0 109.4
C32 C31 H31 105.2 109.5
C31 C32 C33 112.1 109.5
C31 C32 H321 111.3 109.5
C31 C32 H322 111.3 109.5
C35 C36 H361 112.0 109.5
C35 C36 H362 112.0 109.5
C36 C35 C34 106.9 109.5
C36 C35 H351 113.2 109.4
C36 C35 H352 113.2 109.5
H361 C36 H362 98.4 109.5
C34 C35 H351 113.2 109.5
C34 C35 H352 113.2 109.5
C35 C34 C33 109.5 109.5
C35 C34 C41 109.3 109.5
C35 C34 H34 112.2 109.5
H351 C35 H352 97.3 109.5
C33 C34 C41 115.9 109.5
C33 C34 H34 104.9 109.5
C34 C33 C32 112.3 109.5
C34 C33 H331 111.2 109.5
C34 C33 H332 111.2 109.5
C41 C34 H34 105.0 109.5
C34 C41 C42 110.6 109.5
C34 C41 N43 111.6 109.5
C34 C41 H41 107.1 109.4
C32 C33 H331 111.2 109.5
C32 C33 H332 111.2 109.5
C33 C32 H321 111.2 109.4
C33 C32 H322 111.2 109.5
H331 C33 H332 99.2 109.4
H321 C32 H322 99.1 109.4
C42 C41 N43 109.2 109.5
C42 C41 H41 109.6 109.4
C41 C42 H421 111.8 109.4
C41 C42 H422 110.6 109.5
C41 C42 H423 111.8 109.5
N43 C41 H41 108.6 109.5
C41 N43 H431 111.5 106.7
C41 N43 H432 111.6 106.7
H421 C42 H422 111.8 109.5
H421 C42 H423 98.6 109.5
H422 C42 H423 111.8 109.5
H431 N43 H432 111.4 106.7
C14 N21 H21 117.3 120.0
N21 C14 C15 115.7 120.9
N21 C14 C13 123.3 120.9
C15 C14 C13 121.0 118.3
C14 C15 C16 116.1 119.0
C14 C15 H15 122.2 120.4
C14 C13 C12 118.6 119.1
C14 C13 H13 122.0 120.4
C16 C15 H15 121.7 120.5
C15 C16 N11 122.2 120.9
C15 C16 H16 120.7 119.5
N11 C16 H16 117.1 119.6
C16 N11 C12 122.3 121.9
N11 C12 C13 119.8 120.8
N11 C12 H12 118.5 119.6
C13 C12 H12 121.7 119.6
C12 C13 H13 119.4 120.5

Torsion Angles for Y27

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C31 C22 O23 N21 178.6 180.0
O23 C22 C31 C36 318.2 0.0
O23 C22 C31 C32 83.6 120.0
O23 C22 C31 H31 199.4 240.0
O23 C22 N21 C14 16.4 354.5
O23 C22 N21 H21 196.4 174.6
O23 C22 C31 N21 181.3 180.0
C31 C22 N21 C14 197.6 174.5
C31 C22 N21 H21 17.6 354.6
C36 C31 C22 C32 234.5 240.1
C36 C31 C22 H31 118.7 120.0
C22 C31 C36 C35 185.1 180.0
C22 C31 C36 H361 59.9 59.9
C22 C31 C36 H362 310.4 299.9
C32 C31 C22 H31 244.2 239.9
C22 C31 C32 C33 187.6 180.0
C22 C31 C32 H321 62.3 300.0
C22 C31 C32 H322 312.9 60.0
O23 C22 N21 C31 178.7 180.0
N21 C22 C31 C36 136.9 180.0
N21 C22 C31 C32 262.4 299.9
N21 C22 C31 H31 18.2 60.0
C14 N21 C22 H21 180.0 179.9
C22 N21 C14 C15 169.2 327.2
C22 N21 C14 C13 349.8 147.6
C36 C31 C22 N21 136.9 180.0
C22 C31 C36 C32 126.3 120.0
C22 C31 C36 H31 242.3 240.0
C32 C31 C36 H31 116.0 120.1
C36 C31 C32 C33 311.8 300.0
C36 C31 C32 H321 186.5 59.9
C36 C31 C32 H322 77.1 179.9
C35 C36 C31 H361 125.3 120.1
C35 C36 C31 H362 234.7 240.1
C31 C36 C35 C34 293.6 300.0
C31 C36 C35 H351 168.3 180.0
C31 C36 C35 H352 58.8 60.0
H361 C36 C31 H362 109.5 120.0
C32 C31 C22 N21 262.4 299.9
C22 C31 C32 C36 235.8 240.1
C22 C31 C32 H31 117.3 120.0
C36 C31 C32 H31 241.5 240.0
C32 C31 C36 C35 58.8 60.0
C32 C31 C36 H361 293.5 300.0
C32 C31 C36 H362 184.0 180.0
C34 C33 C32 C31 47.0 60.0
C31 C32 C33 H331 172.3 300.0
C31 C32 C33 H332 281.8 180.0
C33 C32 C31 H321 125.3 240.0
C33 C32 C31 H322 234.7 120.0
H321 C32 C31 H322 109.5 240.0
H31 C31 C22 N21 18.2 60.0
C22 C31 H31 C36 118.8 119.9
C22 C31 H31 C32 239.0 240.0
C36 C31 H31 C32 120.1 120.0
H31 C31 C36 C35 302.8 300.0
H31 C31 C36 H361 177.5 179.9
H31 C31 C36 H362 68.0 59.9
H31 C31 C32 C33 70.3 60.0
H31 C31 C32 H321 305.0 180.0
H31 C31 C32 H322 195.6 300.0
C35 C36 C31 C32 58.8 60.0
C35 C36 C31 H31 302.8 300.0
C31 C36 C35 H361 234.7 240.0
C31 C36 C35 H362 125.3 119.9
H361 C36 C35 H362 250.5 240.0
C34 C35 C36 H351 125.2 120.0
C34 C35 C36 H352 234.8 240.0
C36 C35 C34 C33 64.4 60.0
C36 C35 C34 C41 192.4 180.0
C36 C35 C34 H34 308.5 300.0
H351 C35 C36 H352 109.5 120.0
H361 C36 C31 C32 293.5 300.0
H361 C36 C31 H31 177.5 179.9
C31 C36 H361 C35 124.2 120.0
C31 C36 H361 H362 242.1 240.0
C35 C36 H361 H362 117.9 120.0
H361 C36 C35 C34 58.8 60.0
H361 C36 C35 H351 293.6 300.0
H361 C36 C35 H352 184.1 180.0
H362 C36 C31 C32 184.0 180.0
H362 C36 C31 H31 68.0 59.9
C31 C36 H362 C35 235.8 240.1
C31 C36 H362 H361 117.9 120.0
C35 C36 H362 H361 242.1 239.9
H362 C36 C35 C34 168.3 180.0
H362 C36 C35 H351 43.1 60.1
H362 C36 C35 H352 293.5 300.0
C34 C35 C36 H361 58.8 60.0
C34 C35 C36 H362 168.3 180.0
C36 C35 C34 H351 234.7 240.0
C36 C35 C34 H352 125.3 120.0
H351 C35 C34 H352 250.5 240.0
C33 C34 C35 C41 232.0 240.0
C33 C34 C35 H34 116.0 120.0
C35 C34 C33 C32 304.3 300.0
C35 C34 C33 H331 179.1 60.0
C35 C34 C33 H332 69.6 180.0
C41 C34 C35 H34 243.9 240.0
C35 C34 C41 C42 79.9 180.0
C35 C34 C41 N43 201.7 300.0
C35 C34 C41 H41 320.5 60.0
H351 C35 C36 H361 293.6 300.0
H351 C35 C36 H362 43.1 60.1
C36 C35 H351 C34 121.8 120.0
C36 C35 H351 H352 240.9 240.0
C34 C35 H351 H352 119.1 120.0
H351 C35 C34 C33 189.7 180.0
H351 C35 C34 C41 317.7 300.0
H351 C35 C34 H34 73.7 60.0
H352 C35 C36 H361 184.1 180.0
H352 C35 C36 H362 293.5 300.0
C36 C35 H352 C34 238.2 240.0
C36 C35 H352 H351 119.1 120.0
C34 C35 H352 H351 240.9 240.0
H352 C35 C34 C33 299.2 300.0
H352 C35 C34 C41 67.1 60.0
H352 C35 C34 H34 183.2 180.0
C31 C32 C33 C34 47.0 60.0
C33 C34 C35 H351 189.7 180.0
C33 C34 C35 H352 299.2 300.0
C35 C34 C33 C41 124.1 120.0
C35 C34 C33 H34 239.5 240.0
C41 C34 C33 H34 115.3 120.0
C33 C34 C41 C42 204.2 300.0
C33 C34 C41 N43 325.9 60.0
C33 C34 C41 H41 84.7 180.0
C32 C33 C34 H331 125.3 240.0
C32 C33 C34 H332 234.7 120.1
C34 C33 C32 H321 172.3 300.0
C34 C33 C32 H322 281.7 180.0
H331 C33 C34 H332 109.5 240.1
C41 C34 C35 H351 317.7 300.0
C41 C34 C35 H352 67.1 60.0
C35 C34 C41 C33 235.8 240.0
C35 C34 C41 H34 120.5 120.0
C33 C34 C41 H34 244.8 240.0
C41 C34 C33 C32 180.2 180.0
C41 C34 C33 H331 54.9 300.0
C41 C34 C33 H332 305.5 60.0
C42 C41 C34 N43 238.2 240.0
C42 C41 C34 H41 119.4 120.0
C34 C41 C42 H421 54.8 60.0
C34 C41 C42 H422 180.0 300.1
C34 C41 C42 H423 305.3 180.0
N43 C41 C34 H41 241.2 240.0
C34 C41 N43 H431 54.7 300.0
C34 C41 N43 H432 180.0 53.7
H34 C34 C35 H351 73.7 60.0
H34 C34 C35 H352 183.2 180.0
C35 C34 H34 C33 118.7 120.0
C35 C34 H34 C41 241.4 240.0
C33 C34 H34 C41 122.7 120.0
H34 C34 C33 C32 64.9 60.1
H34 C34 C33 H331 299.6 180.1
H34 C34 C33 H332 190.1 300.0
H34 C34 C41 C42 319.4 60.0
H34 C34 C41 N43 81.2 180.0
H34 C34 C41 H41 200.0 300.0
C33 C32 C31 H31 70.3 60.0
C31 C32 C33 H321 234.7 120.0
C31 C32 C33 H322 125.3 240.0
C32 C33 C34 C41 180.2 180.0
C32 C33 C34 H34 64.9 60.1
C34 C33 C32 H331 234.8 120.0
C34 C33 C32 H332 125.3 240.0
H331 C33 C32 H332 250.5 120.0
H321 C32 C33 H322 250.6 119.9
H331 C33 C34 C41 54.9 300.0
H331 C33 C34 H34 299.6 180.1
C34 C33 H331 C32 125.9 240.0
C34 C33 H331 H332 242.9 119.9
C32 C33 H331 H332 117.1 239.9
H331 C33 C32 H321 297.6 180.0
H331 C33 C32 H322 47.0 60.0
H332 C33 C34 C41 305.5 60.0
H332 C33 C34 H34 190.1 300.0
C34 C33 H332 C32 234.1 120.0
C34 C33 H332 H331 117.1 240.1
C32 C33 H332 H331 242.9 120.0
H332 C33 C32 H321 47.1 60.0
H332 C33 C32 H322 156.5 300.1
H321 C32 C31 H31 305.0 180.0
C31 C32 H321 C33 125.7 240.0
C31 C32 H321 H322 242.8 120.0
H321 C32 C33 H331 297.6 180.0
H321 C32 C33 H332 47.1 60.0
C33 C32 H321 H322 117.1 240.1
H322 C32 C31 H31 195.6 300.0
C31 C32 H322 C33 234.3 120.0
C31 C32 H322 H321 117.2 240.0
H322 C32 C33 H331 47.0 60.0
H322 C32 C33 H332 156.5 300.1
C33 C32 H322 H321 242.9 119.9
C42 C41 C34 H34 319.4 60.0
C34 C41 C42 N43 123.2 120.1
C34 C41 C42 H41 242.1 240.0
N43 C41 C42 H41 118.9 120.0
C42 C41 N43 H431 177.3 60.0
C42 C41 N43 H432 302.6 173.8
H421 C42 C41 H422 234.7 120.0
H421 C42 C41 H423 109.5 240.0
H422 C42 C41 H423 234.7 120.0
N43 C41 C34 H34 81.2 180.0
C34 C41 N43 C42 237.4 240.0
C34 C41 N43 H41 117.9 120.0
C42 C41 N43 H41 240.5 240.0
N43 C41 C42 H421 291.6 300.0
N43 C41 C42 H422 56.8 180.0
N43 C41 C42 H423 182.1 60.0
H431 N43 C41 H432 234.7 246.3
H41 C41 C34 H34 200.0 300.0
C34 C41 H41 C42 120.1 120.0
C34 C41 H41 N43 239.3 240.0
C42 C41 H41 N43 119.2 120.0
H41 C41 C42 H421 172.7 180.0
H41 C41 C42 H422 297.9 60.0
H41 C41 C42 H423 63.2 300.0
H41 C41 N43 H431 296.9 180.0
H41 C41 N43 H432 62.1 293.7
H421 C42 C41 N43 291.6 300.0
H421 C42 C41 H41 172.7 180.0
C41 C42 H421 H422 124.6 240.0
C41 C42 H421 H423 242.3 120.0
H422 C42 H421 H423 117.7 240.0
H422 C42 C41 N43 56.8 180.0
H422 C42 C41 H41 297.9 60.0
C41 C42 H422 H421 234.7 120.0
C41 C42 H422 H423 125.3 239.9
H421 C42 H422 H423 250.6 120.0
H423 C42 C41 N43 182.1 60.0
H423 C42 C41 H41 63.2 300.0
C41 C42 H423 H421 117.7 240.0
C41 C42 H423 H422 235.4 120.0
H421 C42 H423 H422 117.7 240.0
H431 N43 C41 H41 296.9 180.0
C41 N43 H431 H432 125.4 113.8
H432 N43 C41 H41 62.1 293.7
C41 N43 H432 H431 234.7 246.2
C22 N21 C14 H21 180.0 180.1
C15 C14 N21 C13 179.3 179.6
N21 C14 C15 C16 180.8 179.8
N21 C14 C15 H15 0.8 0.3
N21 C14 C13 C12 179.6 180.0
N21 C14 C13 H13 359.6 359.9
C22 N21 H21 C14 180.0 179.9
H21 N21 C14 C15 349.2 147.2
H21 N21 C14 C13 169.8 327.5
C15 C14 N21 H21 349.2 147.2
N21 C14 C15 C13 180.6 180.3
C15 C14 C13 C12 0.3 0.3
C15 C14 C13 H13 180.3 180.2
C16 C15 C14 H15 180.0 179.5
C14 C15 C16 N11 359.2 0.5
C14 C15 C16 H16 179.2 180.3
C13 C14 N21 H21 169.8 327.5
N21 C14 C13 C15 179.3 179.7
C13 C14 C15 C16 0.2 359.4
C13 C14 C15 H15 180.2 180.0
N11 C12 C13 C14 359.7 360.0
C14 C13 C12 H12 179.7 179.9
C12 C13 C14 H13 180.0 180.1
C16 C15 C14 C13 0.2 359.4
C14 C15 C16 H15 180.0 180.5
N11 C16 C15 H16 180.0 180.2
C15 C16 N11 C12 0.9 359.8
H15 C15 C14 C13 180.2 180.0
C14 C15 H15 C16 180.0 179.5
H15 C15 C16 N11 179.2 180.0
H15 C15 C16 H16 359.2 359.8
N11 C16 C15 H15 179.2 180.0
C15 C16 N11 H16 180.0 179.8
C16 N11 C12 C13 359.7 359.9
C16 N11 C12 H12 179.7 180.0
H16 C16 C15 H15 359.2 359.8
C15 C16 H16 N11 180.0 180.2
H16 C16 N11 C12 180.9 180.0
C14 C13 C12 N11 359.7 360.0
C12 N11 C16 H16 180.9 180.0
C13 C12 N11 H12 180.0 179.9
N11 C12 C13 H13 179.8 180.1
C14 C13 C12 H13 180.0 179.9
N11 C12 C13 H12 180.0 180.1
N11 C12 H12 C13 180.0 179.9
H12 C12 C13 H13 359.7 0.1
C14 C13 H13 C12 180.0 180.1
H13 C13 C12 H12 359.7 0.1