Atom Nomenclature for Y14

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for Y14

Atom Name (V3) Atom Name (V2)
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
O06 O06
O07 O07
N08 N08
N09 N09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
O19 O19
C20 C20
C21 C21
C22 C22
N23 N23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
N33 N33
C34 C34
H021 1H02
H022 2H02
H031 1H03
H032 2H03
H041 1H04
H042 2H04
H051 1H05
H052 2H05
HN09 HN09
H10 H10
H111 1H11
H112 2H11
H12 H12
H131 1H13
H132 2H13
H141 1H14
H142 2H14
H151 1H15
H152 2H15
H161 1H16
H162 2H16
H171 1H17
H172 2H17
H201 1H20
H202 2H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
HN23 HN23
H251 1H25
H252 2H25
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31