PDB Chemical Component Y11

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for Y11

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C15 C14 1.529 1.530
C15 C16 1.542 1.530
C14 C13 1.510 1.530
C13 C12 1.526 1.529
C16 C17 1.537 1.530
C17 C12 1.527 1.530
C12 C11 1.533 1.530
C11 C10 1.530 1.529
C27 N28 1.329 1.136
C27 C29 1.525 1.473
C10 C18 1.522 1.508
C10 N09 1.473 1.465
N20 C18 1.338 1.348
N20 C29 1.486 1.464
C24 C29 1.530 1.531
C24 C23 1.514 1.531
C18 O19 1.233 1.213
C29 C21 1.534 1.532
N09 C01 1.334 1.348
C23 N25 1.484 1.468
C21 C22 1.513 1.531
C01 O06 1.232 1.216
C01 N08 1.372 1.347
N25 C22 1.495 1.469
N25 C26 1.500 1.469
C05 N08 1.462 1.471
C05 C04 1.537 1.534
N08 C02 1.477 1.472
C04 O07 1.430 1.429
C02 C03 1.532 1.534
O07 C03 1.424 1.429
C02 H021 1.100 1.090
C02 H022 1.100 1.090
C03 H031 1.099 1.090
C03 H032 1.101 1.090
C04 H041 1.100 1.090
C04 H042 1.100 1.090
C05 H051 1.100 1.090
C05 H052 1.100 1.090
N09 HN09 1.000 0.970
C10 H10 1.100 1.089
C11 H111 1.100 1.090
C11 H112 1.100 1.091
C12 H12 1.100 1.090
C13 H131 1.100 1.090
C13 H132 1.100 1.089
C14 H141 1.100 1.090
C14 H142 1.100 1.091
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C17 H171 1.100 1.090
C17 H172 1.100 1.090
N20 HN20 1.000 0.970
C21 H211 1.100 1.090
C21 H212 1.100 1.089
C22 H221 1.100 1.090
C22 H222 1.100 1.090
C23 H231 1.100 1.090
C23 H232 1.100 1.091
C24 H241 1.100 1.090
C24 H242 1.100 1.090
C26 H261 1.100 1.090
C26 H262 1.100 1.089
C26 H263 1.100 1.090

Bond Angles for Y11

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C15 C14 H141 109.1 109.5
C15 C14 H142 108.7 109.5
C15 C16 C17 111.5 109.4
C16 C15 H151 108.6 109.4
C16 C15 H152 108.1 109.5
C15 C16 H161 108.8 109.5
C15 C16 H162 108.3 109.5
C14 C13 H131 108.3 109.5
C14 C13 H132 107.5 109.5
C13 C12 H12 109.9 109.5
C17 C16 H161 108.8 109.4
C17 C16 H162 108.3 109.5
C16 C17 H171 108.4 109.4
C16 C17 H172 107.6 109.5
C17 C12 H12 108.8 109.4
C12 C11 H111 108.3 109.5
C12 C11 H112 107.4 109.4
C11 C10 C18 111.1 109.5
C11 C10 H10 106.8 109.5
N28 C27 C29 125.7 180.0
N20 C29 C27 115.1 109.5
C24 C29 C27 108.5 109.5
C10 C18 O19 119.7 120.0
C18 C10 H10 109.5 109.4
C10 N09 HN09 120.5 120.1
N20 C29 C24 108.5 109.5
N20 C29 C21 109.2 109.6
C29 N20 HN20 117.0 120.0
C29 C24 H241 108.6 109.6
C29 C24 H242 108.0 109.5
C24 C23 N25 109.2 109.5
C24 C23 H231 109.6 109.4
C24 C23 H232 109.7 109.5
C29 C21 H211 108.3 109.5
C29 C21 H212 107.6 109.6
C23 N25 C26 109.4 111.0
N25 C23 H231 109.6 109.5
N25 C23 H232 109.6 109.5
C22 C21 H211 108.4 109.5
C22 C21 H212 107.6 109.5
C21 C22 H221 109.0 109.4
C21 C22 H222 108.6 109.5
O06 C01 N08 122.3 119.9
C01 N08 C05 123.2 121.0
C01 N08 C02 119.2 121.0
N25 C22 H221 109.0 109.5
N25 C22 H222 108.6 109.5
N25 C26 H261 109.5 109.5
N25 C26 H262 109.5 109.5
N25 C26 H263 109.5 109.5
N08 C05 H051 108.4 109.7
N08 C05 H052 107.7 109.7
C05 C04 O07 111.3 109.2
C05 C04 H041 108.9 109.5
C05 C04 H042 108.5 109.5
N08 C02 H021 108.4 109.7
N08 C02 H022 107.6 109.7
O07 C04 H041 108.8 109.6
O07 C04 H042 108.5 109.5
C03 C02 H021 108.4 109.7
C03 C02 H022 107.7 109.6
C02 C03 H031 109.4 109.5
C02 C03 H032 109.4 109.5
O07 C03 H031 109.4 109.6
O07 C03 H032 109.4 109.6
H021 C02 H022 112.0 109.7
H031 C03 H032 109.5 109.5
H041 C04 H042 110.9 109.5
H051 C05 H052 111.9 109.7
H111 C11 H112 112.4 109.4
H131 C13 H132 112.3 109.5
H141 C14 H142 110.5 109.4
H151 C15 H152 111.5 109.5
H161 C16 H162 111.1 109.5
H171 C17 H172 112.1 109.4
H211 C21 H212 112.2 109.5
H221 C22 H222 110.7 109.5
H231 C23 H232 109.3 109.4
H241 C24 H242 111.6 109.5
H261 C26 H262 109.4 109.5
H261 C26 H263 109.5 109.4
H262 C26 H263 109.5 109.4

Torsion Angles for Y11

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C14 C13 H131 62.9 180.0
C15 C14 C13 H132 184.5 60.0
H141 C14 C15 H142 239.5 120.0
C16 C15 C14 H141 173.3 300.0
C16 C15 C14 H142 293.8 180.0
C17 C16 C15 H161 240.0 240.1
C17 C16 C15 H162 119.1 120.0
C15 C16 C17 H171 172.9 300.0
C15 C16 C17 H172 294.3 180.1
H151 C15 C16 H152 121.1 120.0
H161 C16 C15 H162 239.2 240.0
C14 C13 C12 H12 298.0 300.0
H131 C13 C14 H132 238.4 120.0
C17 C12 C13 H12 119.2 120.0
C13 C12 C11 H111 299.2 55.0
C13 C12 C11 H112 60.9 295.0
C17 C16 C15 H151 188.6 180.0
C17 C16 C15 H152 67.5 60.0
C15 C16 C17 H161 120.0 120.0
C15 C16 C17 H162 240.9 240.0
C16 C17 C12 H12 65.3 60.0
H161 C16 C17 H162 120.9 120.0
H171 C17 C16 H172 238.5 119.9
C13 C12 C17 H12 240.1 240.0
C17 C12 C11 H111 60.2 175.0
C17 C12 C11 H112 181.8 55.1
C12 C11 C10 C18 187.7 175.0
C12 C11 C10 H10 68.3 55.0
H111 C11 C12 H112 238.4 120.0
C11 C10 C18 O19 77.3 120.0
C18 C10 C11 H10 119.3 120.0
C11 C10 N09 HN09 352.9 265.0
N20 C29 C27 N28 179.9 313.7
C24 C29 C27 N28 301.5 73.8
N20 C29 C27 C24 238.3 239.9
N20 C29 C27 C21 123.2 120.2
C27 C29 N20 HN20 103.0 120.2
C27 C29 C24 H241 296.9 57.7
C27 C29 C24 H242 58.0 297.6
C27 C29 C21 H211 306.8 62.5
C27 C29 C21 H212 68.3 302.4
C11 C10 C18 H10 242.3 240.0
C18 C10 N09 HN09 115.8 25.0
N20 C18 C10 H10 14.5 60.1
N28 C27 C29 N20 179.9 313.7
C24 C29 N20 C27 238.3 239.9
N20 C29 C24 H241 62.5 177.8
N20 C29 C24 H242 183.7 57.7
N20 C29 C21 H211 180.1 302.3
N20 C29 C21 H212 301.6 182.2
N28 C27 C29 C24 301.5 73.8
N20 C29 C24 C27 125.6 120.1
N20 C29 C24 C21 242.9 240.0
C24 C29 N20 HN20 341.4 0.1
C29 C24 C23 N25 299.5 300.8
C29 C24 C23 H231 59.5 60.9
C29 C24 C23 H232 179.4 180.8
C24 C29 C21 H211 63.5 182.3
C24 C29 C21 H212 185.0 62.2
H241 C24 C29 H242 238.9 120.1
N20 C29 C24 C23 302.5 297.7
C24 C23 N25 C26 178.2 185.8
N25 C23 C24 H231 240.0 239.9
N25 C23 C24 H232 120.1 120.0
H231 C23 C24 H232 240.1 240.1
O19 C18 C10 H10 195.0 240.0
N20 C29 C21 C27 233.4 239.8
N20 C29 C21 C24 116.6 120.0
C21 C29 N20 HN20 226.3 240.4
C22 C21 C29 H211 240.0 119.9
C22 C21 C29 H212 118.5 240.0
C29 C21 C22 H221 174.7 179.2
C29 C21 C22 H222 295.3 299.2
H211 C21 C29 H212 238.5 120.1
C24 C23 N25 H231 120.0 120.0
C24 C23 N25 H232 239.9 239.9
C23 N25 C22 H221 186.3 178.3
C23 N25 C22 H222 65.7 58.2
C23 N25 C26 H261 191.6 60.0
C23 N25 C26 H262 311.6 180.0
C23 N25 C26 H263 71.6 300.0
H231 C23 N25 H232 119.9 119.9
N20 C29 C21 C22 60.1 62.2
C29 C21 C22 H211 120.0 240.1
C29 C21 C22 H212 241.5 120.0
N25 C22 C21 H221 240.0 240.0
N25 C22 C21 H222 119.4 120.0
H211 C21 C22 H212 121.5 239.9
H221 C22 C21 H222 239.4 240.0
O06 C01 N08 C05 187.6 175.0
O06 C01 N08 C02 5.2 355.1
C01 N08 C05 H051 333.8 9.8
C01 N08 C05 H052 95.1 249.2
C01 N08 C02 H021 263.9 110.8
C01 N08 C02 H022 25.3 350.2
N25 C22 C21 H211 294.7 179.1
N25 C22 C21 H212 173.2 299.2
C21 C22 N25 H221 120.0 120.0
C21 C22 N25 H222 240.6 240.0
H221 C22 N25 H222 120.6 120.0
C26 N25 C23 H231 58.2 65.8
C26 N25 C23 H232 298.3 305.9
C26 N25 C22 H221 64.2 54.2
C26 N25 C22 H222 303.6 294.1
H261 C26 N25 H262 240.0 239.9
H261 C26 N25 H263 120.0 119.9
H262 C26 N25 H263 240.0 240.0
C01 N08 C05 C02 177.6 180.1
N08 C05 C04 O07 313.3 52.3
N08 C05 C04 H041 73.2 172.3
N08 C05 C04 H042 194.0 292.4
C05 N08 C02 H021 81.6 290.8
C05 N08 C02 H022 203.0 170.2
H051 C05 N08 H052 238.7 120.6
C01 N08 C05 C04 213.8 129.5
O07 C04 C05 H041 240.0 240.0
O07 C04 C05 H042 119.2 119.9
H041 C04 C05 H042 239.2 239.9
C01 N08 C02 C05 182.3 179.9
C03 C02 N08 H021 240.0 119.8
C03 C02 N08 H022 118.6 240.3
N08 C02 C03 H031 170.6 67.6
N08 C02 C03 H032 290.6 187.6
H021 C02 N08 H022 238.6 120.6
C05 C04 O07 H041 120.0 119.9
C05 C04 O07 H042 240.8 240.1
C04 O07 C03 H031 175.9 302.7
C04 O07 C03 H032 55.9 182.5
H041 C04 O07 H042 120.8 120.2
C01 N08 C02 C03 143.9 230.5
N08 C02 C03 H021 120.0 240.2
N08 C02 C03 H022 241.4 119.7
O07 C03 C02 H031 240.0 240.1
O07 C03 C02 H032 120.0 120.0
H021 C02 C03 H022 121.4 239.5
H031 C03 C02 H032 240.0 240.0
O07 C03 C02 H021 290.6 67.4
O07 C03 C02 H022 169.2 188.0
C02 C03 O07 H031 120.0 119.9
C02 C03 O07 H032 240.0 240.1
H031 C03 O07 H032 120.0 120.2
N08 C02 H021 H022 118.6 239.4
C03 C02 H021 H022 241.3 120.5
H021 C02 C03 H031 50.6 187.4
H021 C02 C03 H032 170.6 307.4
N08 C02 H022 H021 240.9 120.6
C03 C02 H022 H021 119.1 239.5
H022 C02 C03 H031 289.2 307.9
H022 C02 C03 H032 49.2 67.9
H031 C03 C02 H021 50.6 187.4
H031 C03 C02 H022 289.2 307.9
C02 C03 H031 H032 120.0 120.0
O07 C03 H031 H032 240.0 239.7
H032 C03 C02 H021 170.6 307.4
H032 C03 C02 H022 49.2 67.9
C02 C03 H032 H031 240.0 240.0
O07 C03 H032 H031 120.0 120.2
C05 C04 H041 O07 238.5 240.3
C05 C04 H041 H042 119.3 120.1
O07 C04 H041 H042 240.7 239.8
C05 C04 H042 O07 121.0 119.7
C05 C04 H042 H041 240.5 239.9
O07 C04 H042 H041 119.5 120.2
N08 C05 H051 H052 118.7 239.4
H051 C05 C04 O07 193.3 172.0
H051 C05 C04 H041 313.2 292.0
H051 C05 C04 H042 74.0 52.1
N08 C05 H052 H051 240.9 120.5
H052 C05 C04 O07 71.9 292.5
H052 C05 C04 H041 191.9 52.5
H052 C05 C04 H042 312.7 172.6
C11 C10 H10 C18 120.4 120.0
H10 C10 C18 O19 195.0 240.0
H10 C10 N09 HN09 235.2 145.0
C12 C11 H111 H112 118.5 240.0
H111 C11 C10 C18 67.7 295.0
H111 C11 C10 H10 308.3 175.0
C12 C11 H112 H111 241.0 120.0
H112 C11 C10 C18 306.0 55.0
H112 C11 C10 H10 186.7 295.0
H12 C12 C11 H111 179.3 295.0
H12 C12 C11 H112 301.0 175.0
C14 C13 H131 H132 118.5 240.0
H131 C13 C12 H12 178.0 60.0
C14 C13 H132 H131 241.0 120.0
H132 C13 C12 H12 56.4 180.0
C15 C14 H141 H142 119.4 240.0
H141 C14 C13 H131 302.9 300.1
H141 C14 C13 H132 64.4 180.1
C15 C14 H142 H141 240.4 120.0
H142 C14 C13 H131 182.3 60.0
H142 C14 C13 H132 303.9 300.0
H151 C15 C14 H141 293.2 59.9
H151 C15 C14 H142 53.8 299.9
H151 C15 C16 C17 188.6 180.0
C16 C15 H151 H152 241.0 240.0
H151 C15 C16 H161 308.6 300.0
H151 C15 C16 H162 69.5 60.0
H152 C15 C14 H141 54.3 180.0
H152 C15 C14 H142 174.9 60.0
H152 C15 C16 C17 67.5 60.0
C16 C15 H152 H151 119.3 119.9
H152 C15 C16 H161 187.5 180.0
H152 C15 C16 H162 308.4 300.0
C15 C16 H161 C17 238.3 240.0
H161 C16 C15 H151 308.6 300.0
H161 C16 C15 H152 187.5 180.0
C15 C16 H161 H162 119.1 120.1
C17 C16 H161 H162 240.8 240.0
H161 C16 C17 H171 52.9 180.0
H161 C16 C17 H172 174.3 60.1
C15 C16 H162 C17 121.1 120.0
H162 C16 C15 H151 69.5 60.0
H162 C16 C15 H152 308.4 300.0
C15 C16 H162 H161 240.6 240.0
C17 C16 H162 H161 119.5 120.0
H162 C16 C17 H171 292.0 60.0
H162 C16 C17 H172 53.5 300.1
H171 C17 C16 H161 52.9 180.0
H171 C17 C16 H162 292.0 60.0
C16 C17 H171 H172 118.6 240.0
H171 C17 C12 H12 305.2 180.0
H172 C17 C16 H161 174.3 60.1
H172 C17 C16 H162 53.5 300.1
C16 C17 H172 H171 240.9 119.9
H172 C17 C12 H12 183.8 300.0
HN20 N20 C29 C27 103.0 120.2
HN20 N20 C29 C24 341.4 0.1
HN20 N20 C29 C21 226.3 240.4
C29 C21 H211 H212 118.6 239.9
C22 C21 H211 H212 241.4 120.1
H211 C21 C22 H221 54.7 299.1
H211 C21 C22 H222 175.3 59.1
C29 C21 H212 H211 241.0 120.1
C22 C21 H212 H211 119.1 239.9
H212 C21 C22 H221 293.2 59.2
H212 C21 C22 H222 53.8 179.2
H221 C22 C21 H211 54.7 299.1
H221 C22 C21 H212 293.2 59.2
C21 C22 H221 H222 119.4 120.0
N25 C22 H221 H222 240.6 240.0
H222 C22 C21 H211 175.3 59.1
H222 C22 C21 H212 53.8 179.2
C21 C22 H222 H221 240.4 240.0
N25 C22 H222 H221 119.6 120.0
C24 C23 H231 N25 240.3 239.9
C24 C23 H231 H232 120.2 120.0
H231 C23 N25 C26 58.2 65.8
N25 C23 H231 H232 239.9 240.0
C24 C23 H232 N25 119.8 120.1
C24 C23 H232 H231 239.9 240.1
H232 C23 N25 C26 298.3 305.9
N25 C23 H232 H231 120.1 120.0
H241 C24 C29 C27 296.9 57.7
C29 C24 H241 H242 118.9 239.9
H241 C24 C23 N25 179.5 60.8
H241 C24 C23 H231 299.5 180.9
H241 C24 C23 H232 59.4 300.8
H242 C24 C29 C27 58.0 297.6
C29 C24 H242 H241 240.8 120.2
H242 C24 C23 N25 58.4 180.8
H242 C24 C23 H231 178.4 300.9
H242 C24 C23 H232 298.3 60.8
N25 C26 H261 H262 120.0 120.1
N25 C26 H261 H263 240.0 240.0
H262 C26 H261 H263 120.0 120.0
N25 C26 H262 H261 240.0 239.9
N25 C26 H262 H263 120.0 120.0
H261 C26 H262 H263 240.0 240.1
N25 C26 H263 H261 120.0 120.0
N25 C26 H263 H262 240.0 240.0
H261 C26 H263 H262 120.0 120.0