PDB Chemical Component XZZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for XZZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL |
C6 |
1.699 |
1.736 |
| C6 |
C5 |
1.394 |
1.365 |
| C6 |
C7 |
1.388 |
1.394 |
| C5 |
C4A |
1.401 |
1.399 |
| C4A |
C4 |
1.400 |
1.465 |
| C4A |
C8A |
1.405 |
1.407 |
| C4 |
CM4 |
1.400 |
1.507 |
| C4 |
C3 |
1.390 |
1.358 |
| C3 |
C2 |
1.391 |
1.411 |
| C2 |
O2 |
1.360 |
1.218 |
| C2 |
O1 |
1.370 |
1.342 |
| O1 |
C8A |
1.370 |
1.351 |
| C8A |
C8 |
1.392 |
1.387 |
| C8 |
C7 |
1.394 |
1.385 |
| C7 |
O7 |
1.420 |
1.358 |
| C5 |
H5 |
1.080 |
1.080 |
| CM4 |
HM41 |
1.100 |
1.090 |
| CM4 |
HM42 |
1.100 |
1.090 |
| CM4 |
HM43 |
1.100 |
1.090 |
| C3 |
H3 |
1.080 |
1.081 |
| C8 |
H8 |
1.080 |
1.080 |
| O7 |
H7 |
0.950 |
0.967 |
Bond Angles for XZZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL |
C6 |
C7 |
116.9 |
119.8 |
| C6 |
C5 |
C4A |
119.8 |
119.8 |
| C6 |
C5 |
H5 |
120.1 |
120.1 |
| C6 |
C7 |
O7 |
118.3 |
119.7 |
| C5 |
C4A |
C4 |
121.0 |
121.0 |
| C5 |
C4A |
C8A |
118.5 |
120.1 |
| C4A |
C5 |
H5 |
120.1 |
120.1 |
| O1 |
C8A |
C4A |
119.6 |
119.9 |
| C4A |
C8A |
C8 |
121.2 |
119.4 |
| C4 |
CM4 |
HM41 |
109.5 |
109.5 |
| C4 |
CM4 |
HM42 |
109.5 |
109.5 |
| C4 |
CM4 |
HM43 |
109.5 |
109.5 |
| C4 |
C3 |
H3 |
120.5 |
120.1 |
| C3 |
C2 |
O2 |
119.6 |
119.1 |
| C3 |
C2 |
O1 |
121.9 |
121.7 |
| O2 |
C2 |
O1 |
118.4 |
119.2 |
| C2 |
O1 |
C8A |
119.9 |
121.5 |
| O1 |
C8A |
C8 |
119.2 |
120.7 |
| C8A |
C8 |
H8 |
120.1 |
120.1 |
| C8 |
C7 |
O7 |
122.4 |
119.7 |
| C7 |
O7 |
H7 |
109.5 |
114.1 |
| HM41 |
CM4 |
HM42 |
109.5 |
109.5 |
| HM41 |
CM4 |
HM43 |
109.4 |
109.5 |
| HM42 |
CM4 |
HM43 |
109.5 |
109.5 |
Torsion Angles for XZZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CL |
C6 |
C5 |
C4A |
180.0 |
180.0 |
| CL |
C6 |
C5 |
H5 |
0.0 |
359.7 |
| CL |
C6 |
C7 |
O7 |
359.1 |
0.0 |
| C6 |
C5 |
C4A |
C4 |
180.1 |
179.8 |
| C6 |
C5 |
C4A |
C8A |
359.6 |
359.8 |
| C4A |
C5 |
C6 |
H5 |
180.0 |
180.2 |
| C7 |
C6 |
C5 |
C4A |
359.6 |
359.9 |
| C7 |
C6 |
C5 |
H5 |
179.6 |
179.7 |
| C8 |
C7 |
C6 |
O7 |
181.8 |
180.0 |
| C6 |
C7 |
O7 |
H7 |
180.0 |
90.0 |
| C6 |
C5 |
C4A |
H5 |
180.0 |
179.8 |
| O1 |
C8A |
C4A |
C5 |
180.3 |
180.0 |
| C5 |
C4A |
C8A |
C8 |
0.3 |
0.5 |
| C5 |
C4A |
C4 |
C8A |
179.5 |
180.0 |
| C4 |
C4A |
C5 |
H5 |
0.1 |
0.0 |
| C4A |
C4 |
CM4 |
HM41 |
180.0 |
180.0 |
| C4A |
C4 |
CM4 |
HM42 |
300.0 |
300.1 |
| C4A |
C4 |
CM4 |
HM43 |
60.0 |
60.0 |
| C4A |
C4 |
C3 |
H3 |
180.8 |
180.0 |
| C5 |
C4A |
C8A |
C4 |
180.5 |
180.0 |
| C8A |
C4A |
C5 |
H5 |
179.7 |
180.1 |
| C2 |
O1 |
C8A |
C4A |
0.8 |
360.0 |
| O1 |
C8A |
C4A |
C8 |
180.0 |
179.6 |
| C4A |
C8A |
C8 |
H8 |
180.5 |
179.6 |
| C5 |
C4A |
C4 |
CM4 |
360.0 |
360.0 |
| CM4 |
C4 |
C3 |
H3 |
359.8 |
0.0 |
| HM41 |
CM4 |
C4 |
HM42 |
240.0 |
240.0 |
| HM41 |
CM4 |
C4 |
HM43 |
120.0 |
120.0 |
| HM42 |
CM4 |
C4 |
HM43 |
240.0 |
240.0 |
| C5 |
C4A |
C4 |
C3 |
179.0 |
180.0 |
| C4 |
C3 |
C2 |
O2 |
179.3 |
180.1 |
| C4 |
C3 |
C2 |
O1 |
359.8 |
0.2 |
| O2 |
C2 |
C3 |
O1 |
179.5 |
179.9 |
| C3 |
C2 |
O1 |
C8A |
359.4 |
359.9 |
| C3 |
C2 |
O2 |
O1 |
180.5 |
180.1 |
| O2 |
C2 |
O1 |
C8A |
179.9 |
180.0 |
| C3 |
C2 |
O1 |
O2 |
179.5 |
179.9 |
| C2 |
O1 |
C8A |
C8 |
180.7 |
179.6 |
| C5 |
C4A |
C8A |
O1 |
180.3 |
180.0 |
| C4A |
C8A |
O1 |
C8 |
180.0 |
180.4 |
| O1 |
C8A |
C8 |
H8 |
0.5 |
360.0 |
| O1 |
C8A |
C8 |
C4A |
180.0 |
180.4 |
| C8A |
C8 |
C7 |
O7 |
180.6 |
180.2 |
| C6 |
C7 |
C8 |
O7 |
178.2 |
180.0 |
| C8 |
C7 |
O7 |
H7 |
358.2 |
270.0 |
| C6 |
C5 |
H5 |
C4A |
180.0 |
180.2 |
| H5 |
C5 |
C4A |
C4 |
0.1 |
0.0 |
| H5 |
C5 |
C4A |
C8A |
179.7 |
180.1 |
| C4 |
CM4 |
HM41 |
HM42 |
120.0 |
120.0 |
| C4 |
CM4 |
HM41 |
HM43 |
240.0 |
240.0 |
| HM42 |
CM4 |
HM41 |
HM43 |
120.0 |
120.0 |
| C4 |
CM4 |
HM42 |
HM41 |
240.0 |
240.0 |
| C4 |
CM4 |
HM42 |
HM43 |
120.0 |
120.0 |
| HM41 |
CM4 |
HM42 |
HM43 |
240.0 |
240.0 |
| C4 |
CM4 |
HM43 |
HM41 |
120.0 |
120.0 |
| C4 |
CM4 |
HM43 |
HM42 |
240.0 |
240.0 |
| HM41 |
CM4 |
HM43 |
HM42 |
120.0 |
120.0 |
| H3 |
C3 |
C2 |
O2 |
359.3 |
0.0 |
| H3 |
C3 |
C2 |
O1 |
179.8 |
180.1 |
| H8 |
C8 |
C7 |
O7 |
0.6 |
0.2 |