Atom Nomenclature for XZN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for XZN

Atom Name (V3) Atom Name (V2)
CAA CAA
O02 O02
CAC CAC
NAD NAD
CL1 CL1
CL2 CL2
CAG CAG
CAH CAH
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAQ CAQ
CAP CAP
CAS CAS
CAR CAR
NAT NAT
NAU NAU
OAV OAV
OAW OAW
CAX CAX
CAY CAY
CAZ CAZ
CBA CBA
CBB CBB
CBC CBC
CBD CBD
CBE CBE
CBF CBF
CBG CBG
NBH NBH
CAJ CAJ
NBI NBI
C01 C01
CAI CAI
HAA1 HAA1
HAA2 HAA2
HAA3 HAA3
H011 H011
H012 H012
H013 H013
HAC1 HAC1
HAC2 HAC2
HAM1 HAM1
HAM2 HAM2
HAH HAH
HAK HAK
HAL HAL
HAN1 HAN1
HAN2 HAN2
HAO1 HAO1
HAO2 HAO2
HAO3 HAO3
HAP1 HAP1
HAP2 HAP2
HAR1 HAR1
HAR2 HAR2
HAQ1 HAQ1
HAQ2 HAQ2
HAS1 HAS1
HAS2 HAS2
HAU HAU
HAJ HAJ
HAZ HAZ