PDB Chemical Component XYS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for XYS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.553	1.530
C1	O1	1.438	1.429
C1	O5	1.376	1.426
C1	H1	1.115	1.090
C2	C3	1.539	1.532
C2	O2	1.420	1.429
C2	H2	1.115	1.090
C3	C4	1.503	1.532
C3	O3	1.418	1.429
C3	H3	1.116	1.090
C4	C5	1.507	1.530
C4	O4	1.398	1.428
C4	H4	1.114	1.090
C5	O5	1.356	1.426
C5	H51	1.115	1.089
C5	H52	1.114	1.090
O1	HO1	0.950	0.967
O2	HO2	0.949	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967

Bond Angles for XYS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	117.5	109.4
C2	C1	O5	110.3	109.8
C2	C1	H1	105.7	109.4
C1	C2	C3	104.7	109.1
C1	C2	O2	111.4	109.5
C1	C2	H2	111.5	109.6
O1	C1	O5	116.3	109.4
O1	C1	H1	97.7	109.4
C1	O1	HO1	117.6	106.8
O5	C1	H1	107.4	109.4
C1	O5	C5	128.2	107.6
C3	C2	O2	109.7	109.7
C3	C2	H2	113.1	109.5
C2	C3	C4	110.0	108.7
C2	C3	O3	106.6	109.6
C2	C3	H3	112.6	109.6
O2	C2	H2	106.6	109.5
C2	O2	HO2	111.4	106.8
C4	C3	O3	113.7	109.8
C4	C3	H3	105.3	109.5
C3	C4	C5	110.3	109.1
C3	C4	O4	116.0	109.6
C3	C4	H4	105.9	109.5
O3	C3	H3	108.8	109.5
C3	O3	HO3	106.6	106.8
C5	C4	O4	114.0	109.5
C5	C4	H4	108.3	109.6
C4	C5	O5	118.1	109.7
C4	C5	H51	109.1	109.5
C4	C5	H52	109.1	109.4
O4	C4	H4	101.4	109.5
C4	O4	HO4	116.0	106.9
O5	C5	H51	109.1	109.4
O5	C5	H52	109.1	109.4
H51	C5	H52	101.0	109.4

Torsion Angles for XYS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	223.5	239.9
O1	C1	C2	H1	107.7	119.9
C2	C1	O1	HO1	180.0	180.3
O5	C1	C2	H1	244.2	239.9
C2	C1	O5	C5	356.9	292.4
C3	C2	C1	O2	241.5	240.0
C3	C2	C1	H2	122.6	119.9
C1	C2	C3	C4	289.8	306.4
C1	C2	C3	O3	166.1	186.3
C1	C2	C3	H3	46.9	66.1
O2	C2	C1	H2	241.1	239.9
C1	C2	O2	HO2	180.1	60.0
C2	C1	O1	O5	134.0	120.3
C2	C1	O1	H1	247.7	240.1
O1	C1	C2	C3	271.0	301.1
O1	C1	C2	O2	29.6	61.2
O1	C1	C2	H2	148.4	181.3
O5	C1	O1	H1	113.8	119.8
O1	C1	O5	C5	134.0	52.4
C2	C1	O5	O1	222.9	239.9
C2	C1	O5	H1	114.7	120.1
O5	C1	C2	C3	47.5	61.2
O5	C1	C2	O2	166.1	181.2
O5	C1	C2	H2	284.9	301.3
O1	C1	O5	H1	251.8	240.2
O5	C1	O1	HO1	46.1	60.0
C4	C5	O5	C1	336.5	67.6
C1	O5	C5	H51	211.2	307.5
C1	O5	C5	H52	101.8	187.7
C2	C1	H1	O1	121.5	119.8
C2	C1	H1	O5	242.2	239.7
H1	C1	C2	C3	163.3	181.3
H1	C1	C2	O2	281.8	301.3
H1	C1	C2	H2	40.7	61.4
O1	C1	H1	O5	120.7	119.8
H1	C1	O1	HO1	292.3	300.2
H1	C1	O5	C5	242.2	172.3
C3	C2	C1	O1	271.0	301.1
C3	C2	C1	O5	47.5	61.2
C3	C2	C1	H1	163.3	181.3
C1	C2	C3	O2	119.7	119.9
C1	C2	C3	H2	238.5	240.1
O2	C2	C3	H2	118.8	120.2
C3	C2	O2	HO2	295.5	179.7
C4	C3	C2	O3	123.7	120.0
C4	C3	C2	H3	242.9	240.3
C2	C3	C4	C5	45.6	53.6
C2	C3	C4	O4	177.0	173.5
C2	C3	C4	H4	288.6	293.7
O3	C3	C2	H3	119.2	120.3
C2	C3	O3	HO3	180.0	179.9
O2	C2	C1	O1	29.6	61.2
O2	C2	C1	O5	166.1	181.2
O2	C2	C1	H1	281.8	301.3
C1	C2	O2	C3	244.5	240.3
C1	C2	O2	H2	121.8	120.2
C3	C2	O2	H2	237.2	239.8
O2	C2	C3	C4	170.2	186.5
O2	C2	C3	O3	46.5	66.4
O2	C2	C3	H3	287.3	306.1
H2	C2	C1	O1	148.4	181.3
H2	C2	C1	O5	284.9	301.3
H2	C2	C1	H1	40.7	61.4
C1	C2	H2	C3	117.6	119.6
C1	C2	H2	O2	238.3	239.9
C3	C2	H2	O2	120.6	120.3
H2	C2	C3	C4	51.4	66.3
H2	C2	C3	O3	287.7	306.2
H2	C2	C3	H3	168.5	186.0
H2	C2	O2	HO2	58.3	299.8
C4	C3	C2	O2	170.2	186.5
C4	C3	C2	H2	51.4	66.3
C2	C3	C4	O3	240.6	240.1
C2	C3	C4	H3	121.6	119.8
O3	C3	C4	H3	241.0	239.7
C4	C3	O3	HO3	58.7	60.6
C5	C4	C3	O4	228.6	240.1
C5	C4	C3	H4	117.0	119.9
C3	C4	C5	O5	359.9	298.8
C3	C4	C5	H51	125.2	58.8
C3	C4	C5	H52	234.7	178.7
O4	C4	C3	H4	248.4	239.8
C3	C4	O4	HO4	180.0	180.2
O3	C3	C2	O2	46.5	66.4
O3	C3	C2	H2	287.7	306.2
C2	C3	O3	C4	121.3	119.3
C2	C3	O3	H3	238.4	239.7
C4	C3	O3	H3	117.0	120.3
O3	C3	C4	C5	165.0	173.5
O3	C3	C4	O4	296.5	293.4
O3	C3	C4	H4	48.0	53.6
H3	C3	C2	O2	287.3	306.1
H3	C3	C2	H2	168.5	186.0
C2	C3	H3	C4	240.2	240.8
C2	C3	H3	O3	117.9	120.3
C4	C3	H3	O3	237.7	239.5
H3	C3	C4	C5	284.1	293.9
H3	C3	C4	O4	55.5	53.8
H3	C3	C4	H4	167.1	173.9
H3	C3	O3	HO3	301.7	300.3
C1	O5	C5	C4	336.5	67.6
C5	C4	C3	O3	165.0	173.5
C5	C4	C3	H3	284.1	293.9
C3	C4	C5	O4	132.5	119.9
C3	C4	C5	H4	244.5	240.1
O4	C4	C5	H4	112.1	120.1
C5	C4	O4	HO4	309.7	299.8
O5	C5	C4	H51	234.8	239.9
O5	C5	C4	H52	125.3	120.1
H51	C5	C4	H52	250.5	240.1
O4	C4	C3	O3	296.5	293.4
O4	C4	C3	H3	55.5	53.8
C3	C4	O4	C5	230.3	240.4
C3	C4	O4	H4	114.2	120.2
C5	C4	O4	H4	243.8	239.8
O4	C4	C5	O5	227.5	178.8
O4	C4	C5	H51	352.7	298.9
O4	C4	C5	H52	102.2	58.8
H4	C4	C3	O3	48.0	53.6
H4	C4	C3	H3	167.1	173.9
C3	C4	H4	C5	118.3	119.6
C3	C4	H4	O4	238.5	239.8
C5	C4	H4	O4	120.2	120.2
H4	C4	C5	O5	115.4	58.7
H4	C4	C5	H51	240.6	178.8
H4	C4	C5	H52	350.1	298.6
H4	C4	O4	HO4	65.9	60.0
C5	O5	C1	H1	242.2	172.3
O5	C5	C4	O4	227.5	178.8
O5	C5	C4	H4	115.4	58.7
C4	C5	O5	H51	125.2	120.1
C4	C5	O5	H52	234.7	239.9
H51	C5	O5	H52	109.5	119.8
H51	C5	C4	O4	352.7	298.9
H51	C5	C4	H4	240.6	178.8
C4	C5	H51	O5	229.7	239.7
C4	C5	H51	H52	114.9	119.9
O5	C5	H51	H52	245.2	240.1
H52	C5	C4	O4	102.2	58.8
H52	C5	C4	H4	350.1	298.6
C4	C5	H52	O5	130.3	120.3
C4	C5	H52	H51	245.1	240.1
O5	C5	H52	H51	114.8	119.8
HO1	O1	C1	O5	46.1	60.0
HO1	O1	C1	H1	292.3	300.2
HO2	O2	C2	H2	58.3	299.8
HO3	O3	C3	H3	301.7	300.3
HO4	O4	C4	H4	65.9	60.0